config.json

{
  "framework": "Pytorch",
  "task": "protein-engineering",
  "subtasks": [
    "supervised-protein-fitness-training",
    "combinatorial-mutant-proposal",
    "multi-assembly-oligo-design",
    "protein-language-model-zeroshot-screening",
    "benchmark-evaluation"
  ],
  "entrypoints": {
    "train": "scripts/p1_train.py",
    "propose": "scripts/p2_propose.py",
    "assembly_design": "scripts/p3_assembly_design.py",
    "zeroshot": "scripts/plm_zeroshot_ensemble.py",
    "streamlit_app": "scripts/app.py",
    "benchmark": "scripts/notebooks/benchmark/multievolve_hyperparameter_tuning.py"
  },
  "package": "model",
  "example_data": [
    "data/example_protein",
    "data/example_multichain_protein"
  ],
  "model_cache": "hub/checkpoints"
}