File size: 1,626 Bytes
d766458 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 | {
"project": "PXDesign-main",
"layout": {
"conf": "Configuration files, example inputs, license files, and reproduction notes.",
"model": "PXDesign source code, bundled Protenix/PXDesignBench source trees, original README, and assets.",
"scripts": "Installation, dependency, Docker, and download scripts.",
"weight": "Model checkpoints, CCD cache, AF2/ProteinMPNN external tool weights, and MSA cache."
},
"paths": {
"pxdesign_package": "model/pxdesign",
"protenix_source": "model/Protenix-pxd",
"pxdesignbench_source": "model/PXDesignBench",
"example_yaml": "conf/examples/PDL1_quick_start.yaml",
"checkpoint_dir": "weight/release_data/checkpoint",
"ccd_cache_dir": "weight/release_data/ccd_cache",
"tool_weights_root": "weight/tool_weights",
"af2_weights": "weight/tool_weights/af2",
"mpnn_weights": "weight/tool_weights/mpnn",
"reproduction_notes": "conf/PXDESIGN_REPRODUCTION_NOTES.md",
"original_readme": "model/README.md"
},
"environment": {
"conda_env_used": "model_bio",
"tool_weights_root_env": "TOOL_WEIGHTS_ROOT=$PWD/weight/tool_weights",
"protenix_data_root_env": "PROTENIX_DATA_ROOT_DIR=$PWD/weight/release_data/ccd_cache"
},
"validated_tasks": [
"pxdesign check-input",
"pxdesign parse-target",
"pxdesign infer",
"pxdesign pipeline --preset preview",
"pxdesign pipeline --preset extended"
],
"hpc_runtime_overrides": {
"use_fast_ln": false,
"use_deepspeed_evo_attention": false,
"reason": "The DTK/HIP environment failed to build fastfold_layer_norm_cuda with CUDA compiler flags."
}
}
|