UTRGAN / conf /environment.yml
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name: utrgan
channels:
- bioconda
- conda-forge
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- absl-py=2.2.0
- aiohappyeyeballs=2.6.1
- aiohttp=3.11.16
- aiosignal=1.3.2
- anyio=4.9.0
- argon2-cffi=23.1.0
- argon2-cffi-bindings=21.2.0
- arrow=1.3.0
- asttokens=3.0.0
- astunparse=1.6.3
- async-lru=2.0.5
- async-timeout=5.0.1
- attrs=25.3.0
- babel=2.17.0
- beautifulsoup4=4.13.3
- biopython=1.85
- bleach=6.2.0
- bleach-with-css=6.2.0
- blinker=1.9.0
- brotli=1.1.0
- brotli-bin=1.1.0
- brotli-python=1.1.0
- bzip2=1.0.8
- c-ares=1.34.5
- ca-certificates=2025.1.31
- cached_property=1.5.2
- cachetools=5.5.2
- certifi=2025.1.31
- cffi=1.17.1
- charset-normalizer=3.4.1
- click=8.1.8
- colorama=0.4.6
- comm=0.2.2
- contourpy=1.3.0
- cpython=3.9.22
- cryptography=39.0.0
- cuda-version=11.8
- cudatoolkit=11.8.0
- cudnn=8.9.7.29
- cycler=0.12.1
- debugpy=1.8.14
- decorator=5.2.1
- defusedxml=0.7.1
- einops=0.8.1
- exceptiongroup=1.2.2
- executing=2.1.0
- filelock=3.18.0
- flatbuffers=22.12.06
- fonttools=4.57.0
- fqdn=1.5.1
- freetype=2.13.3
- frozenlist=1.5.0
- gast=0.4.0
- giflib=5.2.2
- gmp=6.3.0
- gmpy2=2.1.5
- google-auth=2.39.0
- google-auth-oauthlib=0.4.6
- google-pasta=0.2.0
- grpcio=1.51.1
- gsl=2.7
- h11=0.14.0
- h2=4.2.0
- h5py=3.9.0
- hdf5=1.14.0
- hpack=4.1.0
- httpcore=1.0.7
- httpx=0.28.1
- hyperframe=6.1.0
- icu=70.1
- idna=3.10
- importlib-metadata=8.6.1
- importlib-resources=6.5.2
- importlib_resources=6.5.2
- ipykernel=6.29.5
- ipython=8.18.1
- isoduration=20.11.0
- jedi=0.19.2
- jinja2=3.1.6
- joblib=1.4.2
- jpeg=9e
- json5=0.12.0
- jsonpointer=3.0.0
- jsonschema=4.23.0
- jsonschema-specifications=2024.10.1
- jsonschema-with-format-nongpl=4.23.0
- jupyter-lsp=2.2.5
- jupyter_client=8.6.3
- jupyter_core=5.7.2
- jupyter_events=0.12.0
- jupyter_server=2.15.0
- jupyter_server_terminals=0.5.3
- jupyterlab=4.4.0
- jupyterlab_pygments=0.3.0
- jupyterlab_server=2.27.3
- keras=2.11.0
- keras-preprocessing=1.1.2
- keyutils=1.6.1
- kiwisolver=1.4.7
- krb5=1.20.1
- lcms2=2.15
- ld_impl_linux-64=2.43
- lerc=4.0.0
- libabseil=20220623.0
- libaec=1.1.3
- libblas=3.9.0
- libbrotlicommon=1.1.0
- libbrotlidec=1.1.0
- libbrotlienc=1.1.0
- libcblas=3.9.0
- libcurl=7.87.0
- libdeflate=1.17
- libedit=3.1.20250104
- libev=4.33
- libexpat=2.7.0
- libffi=3.4.6
- libgcc=14.2.0
- libgcc-ng=14.2.0
- libgfortran=14.2.0
- libgfortran-ng=14.2.0
- libgfortran5=14.2.0
- libgomp=14.2.0
- libgrpc=1.51.1
- libhwloc=2.9.1
- libiconv=1.18
- libjpeg-turbo=2.1.4
- liblapack=3.9.0
- liblzma=5.8.1
- liblzma-devel=5.8.1
- libmagma=2.7.1
- libmagma_sparse=2.7.1
- libnghttp2=1.51.0
- libnsl=2.0.1
- libopenblas=0.3.29
- libpng=1.6.47
- libprotobuf=3.21.12
- libsodium=1.0.18
- libsqlite=3.49.1
- libssh2=1.10.0
- libstdcxx=14.2.0
- libstdcxx-ng=14.2.0
- libtiff=4.5.0
- libuuid=2.38.1
- libwebp-base=1.5.0
- libxcb=1.13
- libxcrypt=4.4.36
- libxml2=2.10.3
- libzlib=1.3.1
- llvm-openmp=20.1.2
- magma=2.7.1
- markdown=3.6
- markupsafe=3.0.2
- matplotlib-base=3.9.4
- matplotlib-inline=0.1.7
- mistune=3.1.3
- mkl=2022.2.1
- ml_dtypes=0.2.0
- mpc=1.3.1
- mpfr=4.2.1
- mpmath=1.3.0
- multidict=6.3.2
- munkres=1.1.4
- nbclient=0.10.2
- nbconvert-core=7.16.6
- nbformat=5.10.4
- nccl=2.26.2.1
- ncurses=6.5
- nest-asyncio=1.6.0
- networkx=3.2.1
- notebook=7.4.0
- notebook-shim=0.2.4
- numpy=1.26.4
- oauthlib=3.2.2
- openjpeg=2.5.0
- openssl=1.1.1w
- opt_einsum=3.4.0
- overrides=7.7.0
- packaging=24.2
- pandas=2.2.3
- pandocfilters=1.5.0
- parso=0.8.4
- patsy=1.0.1
- perl=5.32.1
- pexpect=4.9.0
- pickleshare=0.7.5
- pillow=9.4.0
- pip=25.0.1=pyh8b19718_0
- pkgutil-resolve-name=1.3.10
- platformdirs=4.3.7
- polyleven=0.9.0
- prometheus_client=0.21.1
- prompt-toolkit=3.0.50
- propcache=0.3.1
- protobuf=4.21.12
- psutil=7.0.0
- pthread-stubs=0.4
- ptyprocess=0.7.0
- pure_eval=0.2.3
- pyasn1=0.6.1
- pyasn1-modules=0.4.2
- pycparser=2.22
- pygments=2.19.1
- pyjwt=2.10.1
- pyopenssl=23.2.0
- pyparsing=3.2.3
- pysocks=1.7.1
- python=3.9.15
- python-dateutil=2.9.0.post0
- python-fastjsonschema=2.21.1
- python-flatbuffers=25.2.10
- python-json-logger=2.0.7
- python-tzdata=2025.2
- python_abi=3.9
- pytorch=2.0.0
- pytz=2025.2
- pyu2f=0.1.5
- pyyaml=6.0.2
- pyzmq=26.2.0
- qhull=2020.2
- re2=2022.06.01
- readline=8.2
- referencing=0.36.2
- requests=2.32.3
- requests-oauthlib=2.0.0
- rfc3339-validator=0.1.4
- rfc3986-validator=0.1.1
- rpds-py=0.24.0
- rsa=4.9
- scikit-learn=1.6.1
- scipy=1.13.1
- seaborn=0.13.2
- seaborn-base=0.13.2
- send2trash=1.8.3
- setuptools=78.1.0
- six=1.17.0
- sleef=3.8
- snappy=1.1.10
- sniffio=1.3.1
- soupsieve=2.5
- stack_data=0.6.3
- statsmodels=0.14.4
- sympy=1.13.3
- tbb=2021.9.0
- tensorboard=2.11.2
- tensorboard-data-server=0.6.1
- tensorboard-plugin-wit=1.8.1
- tensorflow=2.11.0
- tensorflow-base=2.11.0
- tensorflow-estimator=2.11.0
- tensorflow-gpu=2.11.0
- termcolor=3.0.1
- terminado=0.18.1
- threadpoolctl=3.6.0
- tinycss2=1.4.0
- tk=8.6.13
- tomli=2.2.1
- tornado=6.4.2
- tqdm=4.67.1
- traitlets=5.14.3
- types-python-dateutil=2.9.0.20241206
- typing-extensions=4.13.2
- typing_extensions=4.13.2
- typing_utils=0.1.0
- tzdata=2025b
- unicodedata2=16.0.0
- uri-template=1.3.0
- viennarna=2.7.0
- wcwidth=0.2.13
- webcolors=24.11.1
- webencodings=0.5.1
- websocket-client=1.8.0
- werkzeug=3.1.3
- wheel=0.45.1
- wrapt=1.14.1
- xorg-libxau=1.0.12
- xorg-libxdmcp=1.1.5
- xz=5.8.1
- xz-gpl-tools=5.8.1
- xz-tools=5.8.1
- yaml=0.2.5
- yarl=1.18.3
- zeromq=4.3.5
- zipp=3.21.0
- zlib=1.3.1
- zstandard=0.23.0
- zstd=1.5.7
- pip:
- urllib3==1.26.20