| [DEFAULT] | |
| dataset = 'MTL' | |
| split_like = ['/data/users/wergillius/UTR_VAE/GSE104252/Random_UTR_train_val.csv', '/data/users/wergillius/UTR_VAE/GSE104252/Random_UTR_test.csv'] | |
| batch_size = 32 | |
| max_epoch = 60 | |
| setp_to_check = 2 | |
| run_name = 'scratch' | |
| cell_line = 'A549' | |
| model_type = 'RL_gru' | |
| optimizer = 'Schedule' | |
| lr = 0.003 | |
| l1 = 0 | |
| l2 = 1e-07 | |
| channel_ls = [4, 128, 256, 256, 256] | |
| padding_ls = [1, 1, 1, 1] | |
| diliation_ls = [1, 1, 1, 1] | |
| stride = [1, 1, 1, 3] | |
| kernel_size = 3 | |
| latent_dim = 90 | |
| kld_weight = 0.001 | |
| activation = 'Mish' | |
| lambda = [1] | |
| csv_path = None | |
| aux_task_columns = ['growth_rate'] | |
| seq_col = 'UTR' | |
| pad_to = 105 | |
| trunc_len = None | |
| tower_width = 80 | |
| dropout_rate = 0.3 | |
| pretrain_pth = None | |
| modual_to_fix = None | |
| cuda_id = 0 | |
| kfold_cv = 'train_val' | |
| train_test_ratio = [0.8, 0.1, 0.1] | |
| ran_epoch = 38 | |
| epsilon = 0.2 | |
| best_acc = 0.7058985234407227 | |
| n_current_steps = 461331 | |
| delta = 1 | |