import os import sys import pandas as pd import numpy as np import PATH import torch import argparse # from models import reader from models import train_val from models.popen import Auto_popen from models import max_activation_patch as MAP # from sklearn.linear_model import LassoCV, RidgeCV, ElasticNetCV, LogisticRegressionCV import warnings warnings.filterwarnings('ignore') # parser = argparse.ArgumentParser('the script to evlauate the effect of ') parser.add_argument("-c", "--config", type=str, required=True, help='the model config file: xxx.ini') parser.add_argument("-s", "--set", type=int, default=2, help='train - 0 ,val - 1, test - 2 ') parser.add_argument("-p", "--n_max_act", type=int, default=500, help='the number of seq') parser.add_argument("-k", "--kfold_cv", type=int, default=1, help='the repeat') parser.add_argument("-t", "--task", type=str, default='regression', help='either regression or classification') parser.add_argument("-d", "--device", type=str, default='cpu', help='the device to use to extract featmap, digit or cpu') args = parser.parse_args() config_path = args.config save_path = config_path.replace(".ini", "_coef") config = Auto_popen(config_path) config.batch_size = 256 # config.kfold_cv = 'train_val' all_task = config.cycle_set task_channel_effect = {} task_performance = {} # path check if os.path.exists(config_path) and not os.path.exists(save_path): os.mkdir(save_path) for task in all_task: # .... format featmap as data .... print(f"\n\nevaluating for task: {task}") # re-instance the map for each task map_task = MAP.Maximum_activation_patch(popen=config, which_layer=4, n_patch=args.n_max_act, kfold_index=args.kfold_cv, device_string=args.device) # extract feature map and rl decision chain featmap = map_task.extract_feature_map(task=task, which_set=args.set) cum_rl_trend = map_task.cumulative_rl_decision(task=task, which_set=args.set) # truncate the featmap and rl trend according to sequence length max_seq_len = map_task.df[config.seq_col].apply(len).max() to_stay = max_seq_len // np.product(map_task.strides) +1 trunc_start = featmap.shape[2] - to_stay featmap = featmap[:,:,trunc_start:] cum_rl_trend = cum_rl_trend[:,trunc_start:] # construct input for linear regression n_sample,n_channel,n_posi = featmap.shape X = featmap.reshape(n_sample,-1) Y = map_task.Y_ls.flatten() # .... regression .... if args.task == 'regression': L1 = LassoCV(alphas=np.linspace(2e-3, 0.1, 49)) L2 = RidgeCV(alphas=np.linspace(0.001, 0.101, 20)) elastic = ElasticNetCV(alphas=np.linspace(2e-3, 0.1, 49), n_jobs=10) models = [L1, L2, elastic] model_names = ['Lasso', 'Ridge', 'Elastic'] else: LR = LogisticRegressionCV(n_jobs=10) # L1 = LogisticRegressionCV(n_jobs=10,penalty='l1', solver='saga') # elastic = LogisticRegressionCV(n_jobs=10,penalty='elasticnet', solver='saga', l1_ratios=np.linspace(0.0, 0.5, 10)) models = [LR] model_names = ['Logistic'] for model,name in zip(models, model_names): print(f"\nregressing {name}..") model.fit(X,Y) r2 = model.score(X,Y) # will be sparsity = np.sum(model.coef_==0) / X.shape[1] *100 try: alpha = model.alpha_ except: alpha = 0.0 print(f"{name} with optimal alpha {alpha:.5f}, r2/acc {r2:.3f} , zero coeff {sparsity:.1f}%") # save df effect = model.coef_.reshape(n_channel,-1) fullcoef_df = pd.DataFrame(effect, columns=[f"{name}_posi_"+str(trunc_start+i) for i in range(to_stay)]) fullcoef_df.to_csv( os.path.join(save_path , f"{task}_{name}_coef.csv"), index=False) task_channel_effect[f"{task}_{name}"] = effect.mean(axis=1) task_performance[f"{task}_{name}"] = [alpha, r2, sparsity, model.coef_.max(), model.coef_.min()] all_effect = pd.DataFrame(task_channel_effect) all_effect.to_csv(os.path.join(save_path, "all_task_mean_effect.csv"), index=False) report_df = pd.DataFrame(task_performance) report_df.index = ['optim_alpha','r2', 'zero_pctg', 'max_coef', 'min_coef'] report_df.to_csv(os.path.join(save_path, "regression_report.csv"), index=False)