diff --git a/conf/data/proteingym_v1/struc_seq/20/PTEN_HUMAN_Mighell_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/PTEN_HUMAN_Mighell_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..909b7dbaa9f85f6091d0f3584a279886924b10dd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PTEN_HUMAN_Mighell_2018.fasta @@ -0,0 +1,2 @@ +>PTEN_HUMAN_Mighell_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/20/Q2N0S5_9HIV1_Haddox_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/Q2N0S5_9HIV1_Haddox_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..292baef5c59cfdf1fb0b480ad52bf3a4bd9873a6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q2N0S5_9HIV1_Haddox_2018.fasta @@ -0,0 +1,2 @@ +>Q2N0S5_9HIV1_Haddox_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/20/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta b/conf/data/proteingym_v1/struc_seq/20/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2713c2568f2670ff9f9a1cdbf6eaa4d226bd215c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta @@ -0,0 +1,2 @@ +>Q53Z42_HUMAN_McShan_2019_binding-TAPBPR 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a/conf/data/proteingym_v1/struc_seq/20/Q53Z42_HUMAN_McShan_2019_expression.fasta b/conf/data/proteingym_v1/struc_seq/20/Q53Z42_HUMAN_McShan_2019_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f046dbdd082894db22d21add7ab3d8776362f512 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q53Z42_HUMAN_McShan_2019_expression.fasta @@ -0,0 +1,2 @@ +>Q53Z42_HUMAN_McShan_2019_expression 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a/conf/data/proteingym_v1/struc_seq/20/Q59976_STRSQ_Romero_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/Q59976_STRSQ_Romero_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..174d5c40cd7081c9424aa690656e32b8365cb35b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q59976_STRSQ_Romero_2015.fasta @@ -0,0 +1,2 @@ +>Q59976_STRSQ_Romero_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/20/Q6WV13_9MAXI_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/Q6WV13_9MAXI_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..66f740d29ba5ad4946e5fefd216d17a15f02e27b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q6WV13_9MAXI_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>Q6WV13_9MAXI_Somermeyer_2022 +6,14,2,2,1,1,1,2,1,1,1,2,2,2,14,19,19,14,14,1,1,1,1,1,1,1,2,7,2,19,19,19,2,12,1,1,1,1,1,1,12,14,12,7,7,7,8,6,18,18,0,0,18,3,0,1,1,0,18,2,4,0,19,18,19,2,15,15,6,6,13,8,8,0,0,8,8,0,0,0,6,6,18,1,1,1,1,1,1,1,1,12,14,7,18,1,1,1,1,1,1,14,2,14,2,19,19,2,2,2,2,2,2,2,1,2,2,1,1,7,6,6,13,13,8,7,8,6,6,6,7,7,7,14,12,12,14,1,1,1,1,1,1,14,12,7,7,7,12,12,1,1,1,1,1,1,1,12,12,12,7,7,7,12,12,12,1,1,1,1,1,1,1,1,1,18,7,7,8,8,0,0,0,6,6,3,13,13,6,1,1,1,1,1,1,1,1,14,1,1,12,12,7,12,12,1,1,1,1,1,1,2,2,1,1,1,14,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/Q837P4_ENTFA_Meier_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/Q837P4_ENTFA_Meier_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ff60bbcebc311aa8abe9fd1993cb304fa8f74243 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q837P4_ENTFA_Meier_2023.fasta @@ -0,0 +1,2 @@ +>Q837P4_ENTFA_Meier_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/20/Q837P5_ENTFA_Meier_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/Q837P5_ENTFA_Meier_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a0f87340d896fcf884deac465e58d24c86fd9544 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q837P5_ENTFA_Meier_2023.fasta @@ -0,0 +1,2 @@ +>Q837P5_ENTFA_Meier_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/20/Q8WTC7_9CNID_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/Q8WTC7_9CNID_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c2eafd154385c7345a67554d90f6dc447e2c4f97 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/Q8WTC7_9CNID_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>Q8WTC7_9CNID_Somermeyer_2022 +9,8,0,0,4,0,0,8,0,13,14,2,1,1,1,1,1,1,2,1,2,2,19,19,19,2,14,1,1,1,1,1,1,1,2,7,17,19,19,19,2,12,1,1,1,1,1,12,12,14,14,7,14,6,0,0,18,18,18,3,3,3,18,18,0,0,18,18,4,4,17,18,8,17,6,13,13,6,8,6,7,8,8,8,4,8,8,8,8,6,7,18,1,1,1,1,1,1,1,1,1,14,18,18,1,1,1,1,1,1,1,12,12,2,2,15,19,19,2,2,2,2,1,2,1,2,1,12,12,18,6,0,0,0,18,18,8,8,8,18,18,7,12,14,14,14,1,1,1,1,1,1,1,12,12,6,13,14,7,12,12,1,1,1,1,1,1,12,12,12,12,7,14,14,12,12,12,1,1,1,1,1,1,1,1,12,7,14,6,6,6,6,8,8,7,7,7,12,1,1,1,1,1,1,1,1,1,1,1,15,15,15,15,6,6,14,14,1,1,1,1,1,1,1,2,12,1,14,6,13,13,13,3,3,3,3,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/R1AB_SARS2_Flynn_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/R1AB_SARS2_Flynn_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..09bdc5dbad5230b2ee971e1073057ea46da12bc0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/R1AB_SARS2_Flynn_2022.fasta @@ -0,0 +1,2 @@ +>R1AB_SARS2_Flynn_2022 +15,0,0,15,7,14,14,14,6,18,3,17,7,8,8,8,7,12,1,1,1,6,6,6,6,19,7,12,12,12,12,7,7,12,12,1,1,12,7,8,8,19,8,0,0,0,0,8,0,6,8,4,3,9,3,3,9,0,3,9,0,13,14,14,6,14,12,1,1,7,7,15,14,14,12,12,12,7,12,12,14,18,18,7,7,7,18,12,1,12,12,12,7,7,7,7,8,8,17,5,2,5,2,2,19,14,7,7,7,7,12,12,1,1,12,12,7,7,2,12,7,7,14,14,14,14,1,1,12,7,7,7,7,7,12,12,14,12,14,7,14,19,7,7,7,12,12,12,12,2,2,2,19,14,2,2,2,2,2,12,12,12,12,7,14,14,14,6,6,15,14,14,12,12,7,7,12,7,7,14,7,14,7,14,14,14,14,6,6,6,15,15,6,7,15,7,7,8,8,7,4,4,4,4,10,10,4,10,10,10,9,9,9,0,0,3,3,6,0,9,0,6,0,8,9,0,4,0,9,4,4,16,16,4,0,16,4,8,0,8,4,4,9,3,3,10,9,11,16,10,9,16,10,16,3,16,9,3,9,9,9,0,0,4,4,0,4,10,9,9,9,9,9,3,0,13,6,6,13,13,0,6,6,15,15,15,8,8,8,8,4,4,10,9,4,9,10,3,13,9,3,3,0,6,14,19 diff --git a/conf/data/proteingym_v1/struc_seq/20/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta b/conf/data/proteingym_v1/struc_seq/20/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta new file mode 100644 index 0000000000000000000000000000000000000000..af325264db1941acde928021ecd9096c5ef50396 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta @@ -0,0 +1,2 @@ +>RAD_ANTMA_Tsuboyama_2023_2CJJ +15,0,3,3,0,0,9,11,9,16,16,16,10,10,9,10,9,0,13,13,13,13,9,9,16,9,10,10,10,4,10,4,4,0,4,9,16,9,9,16,16,11,11,11,11,11,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/RAF1_HUMAN_Zinkus-Boltz_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/RAF1_HUMAN_Zinkus-Boltz_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dc1d9d95e560598665b074071a45a229738e6eff --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RAF1_HUMAN_Zinkus-Boltz_2019.fasta @@ -0,0 +1,2 @@ +>RAF1_HUMAN_Zinkus-Boltz_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/RASH_HUMAN_Bandaru_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/RASH_HUMAN_Bandaru_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f2b9020b0c033b408845e9163bb4f454773ea16d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RASH_HUMAN_Bandaru_2017.fasta @@ -0,0 +1,2 @@ +>RASH_HUMAN_Bandaru_2017 +2,2,2,5,5,5,5,5,5,17,8,7,7,17,17,17,18,4,4,8,4,9,9,0,3,9,9,0,0,15,15,6,15,14,14,14,18,14,2,14,2,2,2,12,14,18,6,15,15,2,2,2,2,2,2,2,2,2,18,8,8,0,3,3,3,11,3,4,10,16,17,17,10,4,5,17,5,5,5,5,5,17,19,17,8,8,0,0,0,17,3,9,0,16,11,3,17,11,16,4,9,10,10,4,9,3,0,6,17,17,5,5,5,5,5,17,17,17,8,8,13,6,6,6,0,0,0,3,3,17,0,11,3,17,3,11,0,17,17,17,17,5,17,17,17,0,0,0,4,0,17,9,16,3,17,17,3,4,17,17,16,4,4,16,11,16,16,11,3,3,3,3,3,3,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RASK_HUMAN_Weng_2022_abundance.fasta b/conf/data/proteingym_v1/struc_seq/20/RASK_HUMAN_Weng_2022_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..655b9755a03787bc9b319b12f473b12086ef4624 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RASK_HUMAN_Weng_2022_abundance.fasta @@ -0,0 +1,2 @@ +>RASK_HUMAN_Weng_2022_abundance +2,2,2,5,5,5,5,5,5,17,8,7,7,17,17,17,18,4,4,4,0,9,9,0,3,9,9,0,6,15,15,6,15,14,14,14,18,14,2,14,2,2,2,12,14,18,6,15,15,2,2,2,2,2,2,2,2,2,18,8,8,0,3,3,3,11,3,4,10,16,17,17,9,4,5,17,5,5,5,5,5,17,19,17,8,8,0,0,0,17,3,9,0,16,11,3,9,11,16,4,9,10,10,4,0,3,13,6,17,17,5,5,5,5,5,17,17,17,6,8,13,6,6,6,0,0,0,3,3,17,0,11,3,17,3,11,0,17,17,17,17,5,17,17,17,0,0,0,9,0,17,4,16,3,17,17,3,4,17,17,16,4,4,16,11,16,16,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta b/conf/data/proteingym_v1/struc_seq/20/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta new file mode 100644 index 0000000000000000000000000000000000000000..913a98a9337c5b31fffdb0370db5f331bf9b67f5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta @@ -0,0 +1,2 @@ +>RASK_HUMAN_Weng_2022_binding-DARPin_K55 +2,2,2,5,5,5,5,5,5,17,8,7,7,17,17,17,18,4,4,4,0,9,9,0,3,9,9,0,6,15,15,6,15,14,14,14,18,14,2,14,2,2,2,12,14,18,6,15,15,2,2,2,2,2,2,2,2,2,18,8,8,0,3,3,3,11,3,4,10,16,17,17,9,4,5,17,5,5,5,5,5,17,19,17,8,8,0,0,0,17,3,9,0,16,11,3,9,11,16,4,9,10,10,4,0,3,13,6,17,17,5,5,5,5,5,17,17,17,6,8,13,6,6,6,0,0,0,3,3,17,0,11,3,17,3,11,0,17,17,17,17,5,17,17,17,0,0,0,9,0,17,4,16,3,17,17,3,4,17,17,16,4,4,16,11,16,16,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta b/conf/data/proteingym_v1/struc_seq/20/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a1c9cecdae0f187d4bfc38346fd618a545e2bbfc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta @@ -0,0 +1,2 @@ +>RBP1_HUMAN_Tsuboyama_2023_2KWH +3,3,11,11,11,16,16,11,16,16,11,16,16,16,11,16,16,11,11,16,16,11,11,3,11,11,3,3,3,3,11,11,11,11,11,16,16,16,16,16,16,11,16,16,16,11,16,16,11,16,16,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta b/conf/data/proteingym_v1/struc_seq/20/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dd0d67142e8cc43701b2bee05984c72cdb069b97 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta @@ -0,0 +1,2 @@ +>RCD1_ARATH_Tsuboyama_2023_5OAO +3,3,9,9,9,9,9,9,3,9,9,3,11,11,3,16,11,11,16,11,11,16,16,11,16,3,3,3,3,3,3,3,11,3,3,16,11,3,16,16,11,3,9,9,3,3,3,9,16,11,11,16,16,11,16,9,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/RCRO_LAMBD_Tsuboyama_2023_1ORC.fasta b/conf/data/proteingym_v1/struc_seq/20/RCRO_LAMBD_Tsuboyama_2023_1ORC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..646bb36ba029a9bc0bb8500a20c02f80b30dbf98 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RCRO_LAMBD_Tsuboyama_2023_1ORC.fasta @@ -0,0 +1,2 @@ +>RCRO_LAMBD_Tsuboyama_2023_1ORC +14,14,18,18,18,0,0,0,9,3,3,3,16,16,9,16,9,9,9,0,0,0,3,9,3,16,16,9,16,11,9,9,11,3,3,18,18,12,1,1,14,14,14,15,6,6,6,18,12,1,12,12,14,12,15,15,14,14,14,1,12,18,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta b/conf/data/proteingym_v1/struc_seq/20/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..19e9b3bc8b4cf473eede36507b5c529357950875 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta @@ -0,0 +1,2 @@ +>RD23A_HUMAN_Tsuboyama_2023_1IFY +11,16,16,16,11,16,10,16,16,16,16,3,3,3,16,16,16,16,9,10,10,10,10,10,10,9,9,9,10,10,10,10,16,10,9,9,10,9,9,3,9,9,0,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RDRP_I33A0_Li_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/RDRP_I33A0_Li_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..90e047919421b4df802e1ba5d80296a01b7460a7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RDRP_I33A0_Li_2023.fasta @@ -0,0 +1,2 @@ +>RDRP_I33A0_Li_2023 +15,15,13,13,3,3,3,3,3,3,3,3,3,3,18,0,9,9,9,16,9,9,0,0,0,13,6,8,14,12,12,14,14,18,18,18,4,18,18,10,16,4,4,10,16,4,4,9,4,8,8,8,8,7,14,14,14,7,8,4,8,8,7,7,7,7,8,8,8,17,6,19,19,6,15,15,6,6,8,4,8,8,4,4,9,16,16,10,16,16,16,10,16,16,16,10,3,9,9,3,11,9,10,9,16,16,10,16,16,16,16,11,16,10,0,0,0,0,9,4,4,4,9,8,8,7,7,8,8,8,8,8,8,19,7,7,8,8,8,0,9,0,9,16,16,16,16,3,9,9,16,0,0,9,16,16,16,9,10,4,4,9,9,4,9,10,10,16,16,16,16,16,10,10,9,0,8,18,18,18,18,12,1,18,1,14,12,12,12,14,14,6,6,6,13,6,6,6,6,14,14,12,12,12,1,1,1,1,1,1,1,18,18,4,4,0,4,4,8,17,4,17,18,2,2,12,12,12,12,14,7,14,7,6,15,15,15,14,18,18,12,2,2,2,8,4,10,4,4,10,10,10,10,16,10,10,10,10,10,10,10,10,4,9,4,4,8,8,4,8,8,4,0,3,0,3,3,0,0,3,9,4,11,11,9,0,11,11,0,3,3,3,18,18,13,15,18,18,18,1,1,1,1,1,12,18,18,8,7,8,4,8,4,4,9,4,10,10,16,10,10,10,10,10,10,10,9,9,9,3,3,11,16,9,16,16,10,10,10,10,10,10,10,4,4,8,8,8,7,7,18,18,7,8,7,12,14,14,15,6,6,6,6,15,14,14,12,18,8,8,8,0,4,4,13,13,13,9,13,6,0,3,3,3,16,3,11,16,10,16,16,10,4,8,18,8,8,4,8,2,18,7,7,8,8,4,8,8,18,8,4,10,4,9,16,4,4,10,10,4,4,10,10,18,4,4,18,8,6,0,4,6,6,0,0,18,18,18,18,18,8,18,8,0,18,7,12,1,1,1,1,18,18,18,18,18,3,18,18,11,11,0,11,11,11,16,16,9,10,4,8,4,4,4,4,8,18,14,14,15,14,1,14,1,1,1,18,7,7,12,1,14,14,14,6,7,7,7,7,18,18,8,8,4,4,9,4,9,4,6,4,4,4,4,8,6,6,8,4,8,8,4,4,0,8,4,4,9,10,10,16,16,9,9,3,0,0,0,9,3,9,3,16,9,9,11,16,10,11,16,16,9,3,3,10,10,3,9,4,4,4,4,4,4,0,6,13,13,13,13,3,9,0,3,16,9,9,11,9,9,3,3,0,0,8,8,8,4,8,4,4,4,4,4,4,8,8,6,0,4,4,13,13,9,9,0,0,8,8,0,0,4,4,9,9,0,0,3,3,0,0,3,0,0,0,0,8,13,6,6,6,6,14,6,0,0,0,6,8,6,6,14,14,14,12,14,18,8,6,15,15,14,14,12,12,14,18,8,8,8,8,8,8,18,7,7,14,14,15,15,13,13,13,3,3,13,0,18,0,3,3,16,11,11,11,11,11,11,11,11,11,11,16,11,16,16,16,16,16,16,3,0,0,0,0,0,13,13,15,15,13,13,13,9,16,16,9,16,16,16,16,16,16,11,16,16,16,16,9,3,3,11,3,3,3,9,3,3,3,16,11,11,16,16,11,16,16,16,11,16,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/REV_HV1H2_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/REV_HV1H2_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..afbbe8a9097bdd0b298e1d0af453f0eccf7ba409 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/REV_HV1H2_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>REV_HV1H2_Fernandes_2016 +15,15,15,13,3,3,3,11,11,11,11,11,11,11,11,11,11,11,16,11,11,16,16,3,3,9,13,0,6,6,6,15,13,13,13,11,3,13,11,11,3,3,11,11,16,16,11,11,16,11,11,16,16,11,11,16,11,11,16,16,11,11,16,3,3,3,13,13,13,13,13,13,13,15,13,13,13,13,13,13,13,3,13,13,13,13,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta b/conf/data/proteingym_v1/struc_seq/20/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5ce2a498462e3a1ed74133d3c4261534acd26fe2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta @@ -0,0 +1,2 @@ +>RFAH_ECOLI_Tsuboyama_2023_2LCL +15,14,7,14,14,14,12,12,12,12,7,7,7,6,6,7,7,14,7,12,12,12,12,12,12,14,14,12,14,6,14,12,12,12,12,12,12,14,15,15,15,14,12,12,12,12,12,14,14,7,14,12,12,1,1 diff --git a/conf/data/proteingym_v1/struc_seq/20/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta b/conf/data/proteingym_v1/struc_seq/20/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5dd9d94cf75a91a1e9469f21846e4e512384cf94 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta @@ -0,0 +1,2 @@ +>RL20_AQUAE_Tsuboyama_2023_1GYZ +16,16,16,10,10,9,9,10,9,3,3,3,3,9,3,11,9,9,10,9,10,10,10,9,10,10,10,9,3,3,3,9,9,3,9,16,9,16,16,10,3,3,3,11,11,16,16,11,16,16,11,10,10,10,10,10,10,10,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Mavor_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Mavor_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ce1b9bf78a28584e7cbd76d797f369fb3dbe17f1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Mavor_2016.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Mavor_2016 +15,2,2,2,2,2,2,19,6,19,6,2,2,2,1,14,14,6,6,8,8,8,0,0,0,0,9,3,3,0,3,3,3,3,3,9,9,0,8,14,18,12,2,2,2,15,14,15,14,7,7,8,7,8,8,8,8,8,6,8,6,19,19,2,19,2,2,2,2,2,14,14,14,15,15,15,13,3,3,3,11,11,11,3,3,3,3,9,8,0,0,8,7,7,7,7,7,6,6,7,7,7,7,7,7,6,7,18,8,6,6,13,13,13,13,13,8,8,6,7,7,7,7,12,14,6,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Roscoe_2013.fasta b/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Roscoe_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0c58e59497a0d00e9d578216400a97c052865b22 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Roscoe_2013.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Roscoe_2013 +15,2,2,2,2,2,2,19,6,19,6,2,2,2,1,14,14,6,6,8,8,8,0,0,0,0,9,3,3,0,3,3,3,3,3,9,9,0,8,14,18,12,2,2,2,15,14,15,14,7,7,8,7,8,8,8,8,8,6,8,6,19,19,2,19,2,2,2,2,2,14,14,14,15,15,15,13,3,3,3,11,11,11,3,3,3,3,9,8,0,0,8,7,7,7,7,7,6,6,7,7,7,7,7,7,6,7,18,8,6,6,13,13,13,13,13,8,8,6,7,7,7,7,12,14,6,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Roscoe_2014.fasta b/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Roscoe_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8178a808596ac243e39199e3b60015d15c413f3d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RL40A_YEAST_Roscoe_2014.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Roscoe_2014 +15,2,2,2,2,2,2,19,6,19,6,2,2,2,1,14,14,6,6,8,8,8,0,0,0,0,9,3,3,0,3,3,3,3,3,9,9,0,8,14,18,12,2,2,2,15,14,15,14,7,7,8,7,8,8,8,8,8,6,8,6,19,19,2,19,2,2,2,2,2,14,14,14,15,15,15,13,3,3,3,11,11,11,3,3,3,3,9,8,0,0,8,7,7,7,7,7,6,6,7,7,7,7,7,7,6,7,18,8,6,6,13,13,13,13,13,8,8,6,7,7,7,7,12,14,6,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/RNC_ECOLI_Weeks_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/RNC_ECOLI_Weeks_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a65b91469d63f2742834cc78a53348662a47ff16 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RNC_ECOLI_Weeks_2023.fasta @@ -0,0 +1,2 @@ +>RNC_ECOLI_Weeks_2023 +9,3,11,11,3,3,3,16,9,9,9,10,10,9,0,3,0,0,9,9,9,10,9,4,4,10,4,8,8,6,0,8,8,6,0,4,10,4,10,10,10,10,16,16,10,16,10,10,16,16,16,10,16,10,10,10,9,3,3,0,13,13,0,0,3,3,0,9,10,3,9,10,10,9,9,10,9,10,10,10,10,10,10,10,16,10,16,16,10,10,4,9,4,4,8,4,17,0,3,0,0,3,11,9,9,9,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,4,10,4,9,0,3,9,9,3,10,16,11,16,10,16,16,16,16,11,11,3,16,3,3,3,0,0,0,0,6,9,9,10,16,16,16,16,9,9,3,9,0,0,11,3,3,0,6,6,18,1,12,1,1,1,14,1,14,14,14,14,6,6,14,12,12,12,12,12,12,12,18,6,6,6,15,14,12,18,18,18,18,18,18,18,18,0,18,18,18,4,4,18,4,10,4,0,16,11,3,3,3,16,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/RPC1_BP434_Tsuboyama_2023_1R69.fasta b/conf/data/proteingym_v1/struc_seq/20/RPC1_BP434_Tsuboyama_2023_1R69.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a0f36868154b802027206fddffa71927f087c2b1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RPC1_BP434_Tsuboyama_2023_1R69.fasta @@ -0,0 +1,2 @@ +>RPC1_BP434_Tsuboyama_2023_1R69 +9,9,9,16,16,10,9,11,9,9,3,16,9,3,9,9,9,9,9,4,4,9,10,9,4,9,9,9,9,9,10,10,9,9,9,9,9,9,9,0,13,9,13,9,9,9,10,4,10,10,10,10,9,9,9,9,3,9,4,4,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/RPC1_LAMBD_Li_2019_high-expression.fasta b/conf/data/proteingym_v1/struc_seq/20/RPC1_LAMBD_Li_2019_high-expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..50215a692fb7beac5bc676a3dcb2360e876e7670 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RPC1_LAMBD_Li_2019_high-expression.fasta @@ -0,0 +1,2 @@ +>RPC1_LAMBD_Li_2019_high-expression +15,15,15,15,15,15,6,6,0,3,3,0,0,4,4,4,10,10,10,16,16,16,10,3,16,9,9,3,3,9,3,9,16,9,9,9,9,9,9,16,9,3,3,9,9,9,9,9,16,9,4,9,10,4,4,4,4,4,4,9,9,3,10,9,16,10,16,16,10,10,10,9,9,10,9,4,9,10,9,16,9,16,11,11,16,16,11,11,3,3,3,3,3,3,3,3,13,13,13,6,14,14,14,12,2,2,2,14,19,14,6,6,8,0,6,0,13,13,13,13,13,0,13,13,13,6,7,6,7,12,12,12,14,14,14,14,14,6,6,19,2,2,1,2,2,2,7,7,8,7,7,6,6,6,15,15,6,6,6,6,7,7,7,7,12,2,12,2,12,12,12,7,14,7,7,14,14,14,7,12,12,12,12,12,12,7,7,6,14,12,12,12,12,7,12,12,7,7,15,15,14,7,7,12,12,7,7,7,6,6,6,6,14,12,12,12,7,6,6,14,7,12,12,12,12,12,12,14,1,12,18,18,13,13,13,13,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/RPC1_LAMBD_Li_2019_low-expression.fasta b/conf/data/proteingym_v1/struc_seq/20/RPC1_LAMBD_Li_2019_low-expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e19318c1b253ce6c31ac3a0fddad18b932ad7f84 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RPC1_LAMBD_Li_2019_low-expression.fasta @@ -0,0 +1,2 @@ +>RPC1_LAMBD_Li_2019_low-expression +15,15,15,15,15,15,6,6,0,3,3,0,0,4,4,4,10,10,10,16,16,16,10,3,16,9,9,3,3,9,3,9,16,9,9,9,9,9,9,16,9,3,3,9,9,9,9,9,16,9,4,9,10,4,4,4,4,4,4,9,9,3,10,9,16,10,16,16,10,10,10,9,9,10,9,4,9,10,9,16,9,16,11,11,16,16,11,11,3,3,3,3,3,3,3,3,13,13,13,6,14,14,14,12,2,2,2,14,19,14,6,6,8,0,6,0,13,13,13,13,13,0,13,13,13,6,7,6,7,12,12,12,14,14,14,14,14,6,6,19,2,2,1,2,2,2,7,7,8,7,7,6,6,6,15,15,6,6,6,6,7,7,7,7,12,2,12,2,12,12,12,7,14,7,7,14,14,14,7,12,12,12,12,12,12,7,7,6,14,12,12,12,12,7,12,12,7,7,15,15,14,7,7,12,12,7,7,7,6,6,6,6,14,12,12,12,7,6,6,14,7,12,12,12,12,12,12,14,1,12,18,18,13,13,13,13,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/RS15_GEOSE_Tsuboyama_2023_1A32.fasta b/conf/data/proteingym_v1/struc_seq/20/RS15_GEOSE_Tsuboyama_2023_1A32.fasta new file mode 100644 index 0000000000000000000000000000000000000000..719e66ad345065a880823f133b687787e90b2852 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/RS15_GEOSE_Tsuboyama_2023_1A32.fasta @@ -0,0 +1,2 @@ +>RS15_GEOSE_Tsuboyama_2023_1A32 +16,10,10,11,16,10,10,16,16,16,11,16,16,16,16,16,16,11,11,11,11,11,11,3,11,11,11,11,11,11,11,16,16,11,11,16,16,11,16,16,16,16,16,10,16,16,16,16,16,16,11,16,11,16,16,3,11,16,16,11,3,16,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/S22A1_HUMAN_Yee_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/20/S22A1_HUMAN_Yee_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b6118b802053d19999351acae73ada4f4214602a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/S22A1_HUMAN_Yee_2023_abundance.fasta @@ -0,0 +1,2 @@ +>S22A1_HUMAN_Yee_2023_abundance +3,11,10,9,3,9,4,0,4,4,4,4,4,4,9,9,4,9,3,16,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,4,9,4,4,8,14,7,14,7,12,18,6,0,0,9,9,16,9,9,3,16,9,9,16,3,3,3,3,9,0,0,0,8,6,18,0,0,13,13,13,3,3,0,0,18,8,7,12,7,12,7,14,6,13,0,13,6,13,13,0,0,4,4,0,0,0,13,13,13,3,13,13,13,6,15,6,18,12,12,18,7,14,14,14,14,14,14,14,14,19,19,8,0,4,0,6,9,9,0,3,0,0,0,3,3,16,16,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,10,9,9,10,10,9,9,9,10,9,16,10,10,16,10,10,10,16,10,10,16,10,10,10,10,10,10,10,10,9,9,9,10,9,3,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,9,10,10,4,4,4,9,4,9,9,3,3,11,10,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,16,10,10,16,9,4,4,4,9,10,10,10,10,10,10,16,16,16,16,16,16,16,16,16,9,9,3,3,9,9,4,9,10,9,9,16,10,10,9,16,16,16,16,9,16,10,16,16,10,9,10,4,4,9,10,4,4,4,4,4,4,9,3,10,16,11,16,16,16,3,9,9,3,13,15,6,15,6,0,3,3,13,9,9,9,9,16,9,9,9,16,3,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,4,9,9,9,3,10,10,16,10,10,16,10,10,10,10,10,10,16,10,10,10,16,10,10,16,3,9,9,0,0,0,0,4,4,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,3,3,9,3,3,9,11,3,16,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,4,10,4,4,4,4,4,4,8,0,9,9,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,16,9,9,3,3,3,3,16,16,10,10,16,10,10,10,10,10,10,10,10,10,10,16,10,10,9,4,4,8,8,8,6,6,6,6,8,8,0,0,0,0,0,4,0,3,0,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/S22A1_HUMAN_Yee_2023_activity.fasta b/conf/data/proteingym_v1/struc_seq/20/S22A1_HUMAN_Yee_2023_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6bfe44b0265ed816c737e43fae4445b5146744b2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/S22A1_HUMAN_Yee_2023_activity.fasta @@ -0,0 +1,2 @@ +>S22A1_HUMAN_Yee_2023_activity +3,11,10,9,3,9,4,0,4,4,4,4,4,4,9,9,4,9,3,16,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,4,9,4,4,8,14,7,14,7,12,18,6,0,0,9,9,16,9,9,3,16,9,9,16,3,3,3,3,9,0,0,0,8,6,18,0,0,13,13,13,3,3,0,0,18,8,7,12,7,12,7,14,6,13,0,13,6,13,13,0,0,4,4,0,0,0,13,13,13,3,13,13,13,6,15,6,18,12,12,18,7,14,14,14,14,14,14,14,14,19,19,8,0,4,0,6,9,9,0,3,0,0,0,3,3,16,16,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,10,9,9,10,10,9,9,9,10,9,16,10,10,16,10,10,10,16,10,10,16,10,10,10,10,10,10,10,10,9,9,9,10,9,3,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,9,10,10,4,4,4,9,4,9,9,3,3,11,10,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,16,10,10,16,9,4,4,4,9,10,10,10,10,10,10,16,16,16,16,16,16,16,16,16,9,9,3,3,9,9,4,9,10,9,9,16,10,10,9,16,16,16,16,9,16,10,16,16,10,9,10,4,4,9,10,4,4,4,4,4,4,9,3,10,16,11,16,16,16,3,9,9,3,13,15,6,15,6,0,3,3,13,9,9,9,9,16,9,9,9,16,3,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,4,9,9,9,3,10,10,16,10,10,16,10,10,10,10,10,10,16,10,10,10,16,10,10,16,3,9,9,0,0,0,0,4,4,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,3,3,9,3,3,9,11,3,16,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,4,10,4,4,4,4,4,4,8,0,9,9,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,16,9,9,3,3,3,3,16,16,10,10,16,10,10,10,10,10,10,10,10,10,10,16,10,10,9,4,4,8,8,8,6,6,6,6,8,8,0,0,0,0,0,4,0,3,0,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta b/conf/data/proteingym_v1/struc_seq/20/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1d0396a9d5f86677b9f40e2517ce659b68ff6f35 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta @@ -0,0 +1,2 @@ +>SAV1_MOUSE_Tsuboyama_2023_2YSB +15,15,15,13,6,6,6,6,6,7,12,1,12,14,6,6,6,6,6,14,12,12,12,7,18,8,8,8,18,12,14,14,6,18,6,13,13,13,13,13,13,13,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/SBI_STAAM_Tsuboyama_2023_2JVG.fasta b/conf/data/proteingym_v1/struc_seq/20/SBI_STAAM_Tsuboyama_2023_2JVG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f85be3e733c146538e6486f9af8ff84c4e777013 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SBI_STAAM_Tsuboyama_2023_2JVG.fasta @@ -0,0 +1,2 @@ +>SBI_STAAM_Tsuboyama_2023_2JVG +11,0,0,3,3,9,10,16,16,16,10,16,16,10,10,16,16,16,3,3,3,3,3,3,11,16,11,16,16,10,16,16,10,10,9,16,9,9,3,9,16,3,11,16,10,11,16,16,16,11,16,16,11,11,3,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/SC6A4_HUMAN_Young_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/SC6A4_HUMAN_Young_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c8c6cd03fd2bccec4455985de05ca4454f6b9884 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SC6A4_HUMAN_Young_2021.fasta @@ -0,0 +1,2 @@ +>SC6A4_HUMAN_Young_2021 +15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,3,3,3,11,11,11,11,3,3,13,13,15,8,8,8,4,4,0,0,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,10,10,9,10,10,4,10,10,4,4,4,4,10,9,16,10,10,10,10,10,10,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,4,10,10,4,10,10,10,9,9,4,4,4,4,4,4,4,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,16,10,10,4,4,13,4,4,4,4,4,8,8,6,8,6,0,8,8,6,19,8,6,6,6,8,13,13,13,13,15,15,6,6,6,6,6,8,8,8,4,4,4,4,10,10,9,9,10,9,4,4,4,4,4,8,0,0,8,8,4,8,8,4,4,3,10,10,10,16,16,10,10,16,10,10,16,16,10,10,10,16,10,10,4,4,4,4,9,10,10,10,10,10,10,16,10,10,10,10,10,16,16,10,10,16,16,10,10,16,10,10,10,9,4,9,9,10,10,10,10,10,4,4,10,4,4,4,4,0,9,9,10,11,16,11,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,4,4,4,4,4,4,4,4,4,10,16,16,10,10,16,16,10,10,16,16,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,10,9,3,3,9,16,9,3,9,9,9,0,0,0,9,0,9,9,10,9,10,10,10,10,10,10,9,9,9,3,9,10,4,16,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,9,9,9,3,3,3,3,3,3,3,3,9,9,16,16,16,16,11,16,16,16,10,10,10,16,10,10,10,10,10,10,4,4,4,4,10,4,10,10,9,10,10,10,4,4,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,9,10,9,9,4,4,9,3,3,11,10,4,3,9,10,3,4,4,4,0,0,3,9,13,3,10,10,9,10,10,10,9,9,9,10,10,16,10,10,16,11,16,16,16,16,9,3,3,3,13,13,6,8,6,6,15,15,15,15,6,13,3,3,16,9,16,16,16,9,16,10,9,10,10,10,10,10,16,10,10,11,16,10,16,16,10,9,9,0,9,0,0,0,0,16,3,9,9,9,4,4,4,4,4,8,0,13,13,13,13,13,13,15,13,13,13,13,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta b/conf/data/proteingym_v1/struc_seq/20/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..301570c6e9fe64650e031e71b44990b98b7296ee --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta @@ -0,0 +1,2 @@ +>SCIN_STAAR_Tsuboyama_2023_2QFF +11,16,11,11,10,10,11,16,10,16,11,10,16,11,11,10,16,11,10,10,16,16,9,9,3,3,3,3,3,9,16,11,10,10,16,16,16,10,16,16,10,16,16,16,10,16,3,10,10,10,16,16,10,10,16,16,10,16,16,10,16,16,10,10,11,16,10,16,11,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/SCN5A_HUMAN_Glazer_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/SCN5A_HUMAN_Glazer_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..84ca724dc5a05ad1eac27bc20e3de62e3dfdd337 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SCN5A_HUMAN_Glazer_2019.fasta @@ -0,0 +1,2 @@ +>SCN5A_HUMAN_Glazer_2019 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,17,17,0,0,0,9,3,11,16,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,6,7,6,7,7,7,8,4,9,9,9,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,15,15,15,15,15,15,15,13,15,15,15,13,13,3,3,3,3,11,11,11,3,3,3,13,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/SDA_BACSU_Tsuboyama_2023_1PV0.fasta b/conf/data/proteingym_v1/struc_seq/20/SDA_BACSU_Tsuboyama_2023_1PV0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..61593d47b7936043d0bb994e93f6ef79ad5d517e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SDA_BACSU_Tsuboyama_2023_1PV0.fasta @@ -0,0 +1,2 @@ +>SDA_BACSU_Tsuboyama_2023_1PV0 +15,15,13,13,3,3,11,3,16,16,11,16,16,16,11,16,3,11,3,3,3,3,3,11,16,11,11,11,16,16,11,16,16,11,11,16,3,16,3,3,3,3,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/SERC_HUMAN_Xie_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/SERC_HUMAN_Xie_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6aa4f26182c7767fea7f3b8b7891abbf0f6c277f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SERC_HUMAN_Xie_2023.fasta @@ -0,0 +1,2 @@ +>SERC_HUMAN_Xie_2023 +15,15,15,15,6,19,17,4,7,18,18,7,8,7,7,7,8,0,3,16,16,16,11,16,16,3,3,0,0,0,8,0,8,8,8,8,8,8,4,0,0,0,0,0,13,3,3,3,9,3,11,10,10,16,16,10,10,16,16,10,3,9,4,4,0,0,0,6,6,18,18,18,18,18,18,18,8,18,0,4,4,4,16,10,4,17,4,4,4,8,8,8,8,8,4,8,17,17,17,5,5,19,19,19,19,3,0,17,0,16,9,17,16,16,9,17,9,17,17,17,17,5,19,19,6,6,6,15,15,8,19,7,7,7,6,6,8,13,6,6,6,19,19,19,19,19,17,17,5,5,19,19,19,8,8,7,18,7,7,7,7,14,6,15,6,6,13,19,15,19,19,5,5,5,5,5,19,19,8,19,19,17,4,4,4,17,6,6,6,6,19,5,2,5,2,17,18,18,7,8,8,8,8,8,7,18,18,18,1,1,2,18,18,18,6,8,8,0,8,4,8,6,6,0,8,0,8,4,4,8,4,9,0,8,9,3,0,0,0,9,0,13,18,18,4,4,18,4,10,4,4,10,10,10,10,10,9,10,16,11,3,3,4,4,4,9,9,4,16,4,4,16,16,10,4,11,16,16,0,16,16,4,3,3,9,0,6,8,8,7,7,7,7,7,8,14,7,7,8,8,7,7,7,7,7,7,8,8,7,7,19,18,0,0,3,9,0,3,11,16,3,11,16,9,3,9,9,17,0,0,7,8,8,7,7,6,6,7,7,18,7,7,18,7,8,8,8,8,8,4,9,16,4,10,16,16,16,16,11,16,16,16,11,16,9,3,3,9,9,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/SHOC2_HUMAN_Kwon_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/SHOC2_HUMAN_Kwon_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0a9945d178f768c0aaa79f4f42d4471cde0bfa4d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SHOC2_HUMAN_Kwon_2022.fasta @@ -0,0 +1,2 @@ +>SHOC2_HUMAN_Kwon_2022 +15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,13,13,13,13,13,13,13,13,13,13,13,13,3,0,11,16,3,16,11,11,16,16,11,9,9,16,3,9,0,17,5,17,19,17,5,19,17,17,17,19,19,17,4,9,10,10,9,10,4,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,19,17,4,10,4,4,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,19,17,4,4,10,4,10,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,19,17,4,9,4,10,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,19,19,17,4,10,10,10,10,4,4,17,17,17,5,5,5,5,5,5,5,5,5,5,5,17,4,4,10,4,10,10,4,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,17,17,4,10,4,10,10,4,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,17,17,4,10,4,4,10,4,4,4,17,17,19,19,19,5,5,5,5,5,5,5,5,19,17,4,4,4,4,10,4,4,4,17,5,5,5,5,5,5,5,5,5,5,5,5,19,17,17,4,4,4,4,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,19,19,19,8,0,4,4,4,17,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,19,19,17,0,0,4,4,0,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,19,19,6,13,9,0,9,9,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,19,17,4,10,4,10,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,17,17,4,4,4,4,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,19,17,4,4,4,10,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,17,17,4,10,4,4,10,4,4,17,17,5,5,5,5,5,5,5,5,5,5,5,5,17,17,4,4,4,10,10,4,4,17,17,19,5,5,5,5,5,19,17,17,17,17,17,17,4,4,10,4,4,9,10,4,4,17,17,17,5,5,5,19,19,19,17,0,0,0,0,3,3,3,3,3,3,3,3,3,3,3,11,9,9,16,10,9,9,9,9,9,9,9,9,13,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta b/conf/data/proteingym_v1/struc_seq/20/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cb5da2743b8e144ec3f463be2558406a9f8acb12 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta @@ -0,0 +1,2 @@ +>SOX30_HUMAN_Tsuboyama_2023_7JJK +15,8,9,9,10,10,10,16,10,16,16,11,16,16,16,16,16,9,3,11,3,3,3,3,3,9,11,11,16,16,11,16,16,16,11,11,16,16,3,3,3,3,3,3,16,16,16,16,16,16,16,9,4,11,9,0,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/SPA_STAAU_Tsuboyama_2023_1LP1.fasta b/conf/data/proteingym_v1/struc_seq/20/SPA_STAAU_Tsuboyama_2023_1LP1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1de4ce49dd975589452313f189ff881db2785b97 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPA_STAAU_Tsuboyama_2023_1LP1.fasta @@ -0,0 +1,2 @@ +>SPA_STAAU_Tsuboyama_2023_1LP1 +13,3,9,10,16,10,10,16,10,10,11,10,10,9,9,9,4,0,9,9,3,11,16,9,16,11,10,10,16,16,10,16,11,16,16,16,16,10,16,16,10,10,16,16,10,16,11,16,9,9,0,13,0,13,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/SPG1_STRSG_Olson_2014.fasta b/conf/data/proteingym_v1/struc_seq/20/SPG1_STRSG_Olson_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3984cfcc8b45ab4bfe1e5aadcc6393852bb271e2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPG1_STRSG_Olson_2014.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Olson_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SPG1_STRSG_Wu_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/SPG1_STRSG_Wu_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e87484d242ae2b140269680c6c82146bd2499e66 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPG1_STRSG_Wu_2016.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Wu_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta b/conf/data/proteingym_v1/struc_seq/20/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3c6ca616e108e1e9e8bd5ef79ca77382953e14e5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta @@ -0,0 +1,2 @@ +>SPG2_STRSG_Tsuboyama_2023_5UBS +15,2,2,2,2,2,2,2,14,19,15,14,14,14,2,2,1,14,14,13,15,6,6,3,3,17,0,11,11,0,3,11,11,3,3,11,3,3,0,19,19,14,14,2,2,6,19,6,19,19,2,2,2,2,14,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/SPIKE_SARS2_Starr_2020_binding.fasta b/conf/data/proteingym_v1/struc_seq/20/SPIKE_SARS2_Starr_2020_binding.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7a2b4013d36a5335db5d7061a6c5a0ef684d4b77 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPIKE_SARS2_Starr_2020_binding.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_binding 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SPIKE_SARS2_Starr_2020_expression.fasta b/conf/data/proteingym_v1/struc_seq/20/SPIKE_SARS2_Starr_2020_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2a04e1d803b6c60c9e98e1fc029ab4218e2b9980 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPIKE_SARS2_Starr_2020_expression.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_expression 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta b/conf/data/proteingym_v1/struc_seq/20/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..596235d140456477c1d9b5e16e8e084e70ca4b94 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta @@ -0,0 +1,2 @@ +>SPTN1_CHICK_Tsuboyama_2023_1TUD +15,14,14,12,12,12,12,7,12,12,18,12,12,14,15,15,15,15,14,14,12,12,12,7,7,7,7,7,14,14,15,6,6,14,14,14,14,7,7,7,7,7,12,12,1,1,12,12,12,15,14,6,18,18,12,12,1,1,14,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta b/conf/data/proteingym_v1/struc_seq/20/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4df06889bc27b462f614ca5813f10fd3a8f82d89 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta @@ -0,0 +1,2 @@ +>SQSTM_MOUSE_Tsuboyama_2023_2RRU +9,16,16,16,16,9,3,11,16,3,3,3,3,3,3,3,13,3,3,3,9,16,16,16,16,16,16,16,9,16,16,16,16,16,16,16,11,16,16,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/SR43C_ARATH_Tsuboyama_2023_2N88.fasta b/conf/data/proteingym_v1/struc_seq/20/SR43C_ARATH_Tsuboyama_2023_2N88.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3a077443507b9f5bfe338a2bb1909e38e0604be2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SR43C_ARATH_Tsuboyama_2023_2N88.fasta @@ -0,0 +1,2 @@ +>SR43C_ARATH_Tsuboyama_2023_2N88 +15,14,14,14,7,7,7,12,12,12,12,12,6,6,6,6,6,12,12,12,12,12,12,14,14,15,15,15,14,12,12,12,12,12,12,6,6,18,0,11,3,0,0,3,3,0,13,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta b/conf/data/proteingym_v1/struc_seq/20/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta new file mode 100644 index 0000000000000000000000000000000000000000..53b0ee5a33ca1a106ed90fad76e39ee0282e6bd8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta @@ -0,0 +1,2 @@ +>SRBS1_HUMAN_Tsuboyama_2023_2O2W +13,15,18,15,7,7,12,1,12,12,7,7,7,7,7,14,14,15,6,6,14,12,14,14,7,7,7,12,7,12,12,12,12,12,12,12,14,14,6,18,14,14,12,12,12,14,14,15,15,15,14,14,12,12,14,14,12,7,12,12,12,12,1,12,12,12,7 diff --git a/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Ahler_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Ahler_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7ded30f5e381257749a11af4e53e42e0e3d5b4c8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Ahler_2019.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Ahler_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta b/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..613d0656af784e0de8b64caac41df5467935d062 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Nguyen_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Nguyen_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bf531e98174933aba8d4a3291dfe7bc7f74793aa --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SRC_HUMAN_Nguyen_2022.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Nguyen_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/20/SUMO1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/SUMO1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..15ae47cd7052b49fda16e3e91eaa9a2cddc69ed8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SUMO1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>SUMO1_HUMAN_Weile_2017 +15,15,15,15,15,15,15,15,13,13,15,15,15,15,15,15,15,6,6,7,7,7,2,2,2,2,2,2,19,19,19,6,2,2,2,12,12,7,7,7,6,8,8,0,0,9,0,9,16,16,0,3,16,11,3,3,3,3,0,6,6,18,12,2,2,2,6,14,14,14,18,7,0,6,6,8,8,8,0,0,0,19,19,2,2,2,2,2,2,2,2,18,18,6,13,13,13,13,15,13,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/SYUA_HUMAN_Newberry_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/SYUA_HUMAN_Newberry_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c319b77d232710f819069d0d20c3cafb9bc9988b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/SYUA_HUMAN_Newberry_2020.fasta @@ -0,0 +1,2 @@ +>SYUA_HUMAN_Newberry_2020 +11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,13,13,3,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,15,13,13,13,13,13,15,15,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/TADBP_HUMAN_Bolognesi_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/TADBP_HUMAN_Bolognesi_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cefef0d374d109c4a640e434d63759d6c8b450bb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TADBP_HUMAN_Bolognesi_2019.fasta @@ -0,0 +1,2 @@ +>TADBP_HUMAN_Bolognesi_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/TAT_HV1BR_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/TAT_HV1BR_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fa8b7ecea7c9e89fde6ea81a0b4d3ba0e702b394 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TAT_HV1BR_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>TAT_HV1BR_Fernandes_2016 +15,15,15,15,6,6,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15,6,6,8,4,0,0,9,0,0,9,9,0,0,0,0,9,9,9,9,9,9,9,9,3,13,15,15,15,15,15,13,15,15,15,15,15,15,15,15,15,15,15,15,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta b/conf/data/proteingym_v1/struc_seq/20/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta new file mode 100644 index 0000000000000000000000000000000000000000..da388d372e5b4226b3da4b6a3a97753cfc438a4f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta @@ -0,0 +1,2 @@ +>TCRG1_MOUSE_Tsuboyama_2023_1E0L +15,4,4,4,8,4,8,18,12,12,12,14,14,6,6,15,6,14,12,12,12,18,7,8,8,8,14,12,1,12,14,18,18,4,4,0,4 diff --git a/conf/data/proteingym_v1/struc_seq/20/THO1_YEAST_Tsuboyama_2023_2WQG.fasta b/conf/data/proteingym_v1/struc_seq/20/THO1_YEAST_Tsuboyama_2023_2WQG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..60e34a3708d4d2d254a26908cca81af456ead5ed --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/THO1_YEAST_Tsuboyama_2023_2WQG.fasta @@ -0,0 +1,2 @@ +>THO1_YEAST_Tsuboyama_2023_2WQG +13,3,3,9,9,13,9,3,9,11,11,16,9,16,16,9,3,11,3,3,3,0,9,13,13,3,9,16,3,9,16,11,16,16,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta b/conf/data/proteingym_v1/struc_seq/20/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6dcb212a45a398313cb9ca5551bf3743b04b529d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta @@ -0,0 +1,2 @@ +>TNKS2_HUMAN_Tsuboyama_2023_5JRT +3,3,3,9,3,9,10,16,16,10,16,16,16,3,16,16,11,16,9,3,16,3,3,9,3,9,9,3,4,9,9,9,9,9,3,3,9,3,11,16,9,16,3,3,3,11,16,3,3,16,10,9,11,10,10,3,11,10,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/TPK1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/TPK1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..26725c90b37bcc095e2a30188e26749111759d4f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TPK1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>TPK1_HUMAN_Weile_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/20/TRPC_SACS2_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/TRPC_SACS2_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9034532c7b001932790501982e42fd1899f44ba1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TRPC_SACS2_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_SACS2_Chan_2017 +14,6,6,14,0,13,3,3,3,3,3,3,0,11,3,0,13,13,13,0,0,8,7,8,19,8,8,19,19,19,19,19,17,17,3,9,17,10,16,4,9,11,3,3,0,17,17,5,5,5,5,17,19,7,7,7,8,6,15,6,6,14,6,6,0,0,9,9,9,17,9,9,17,0,0,17,17,17,5,5,5,5,19,19,19,8,8,8,7,7,7,0,17,9,4,17,4,10,4,17,4,9,17,19,17,17,5,5,5,5,19,17,17,0,0,10,13,0,4,4,8,17,17,8,4,17,5,5,5,5,5,5,19,17,6,6,6,0,9,9,0,4,9,16,9,4,3,9,4,3,3,9,17,17,17,5,5,5,5,17,17,0,3,3,17,0,3,9,4,0,9,9,4,17,19,5,5,5,5,19,19,8,6,0,13,6,0,6,6,8,0,11,0,17,10,9,0,4,9,3,0,6,6,19,19,17,5,5,5,5,19,19,6,13,0,3,3,3,0,16,11,9,0,3,16,17,17,17,5,5,5,5,19,6,0,0,6,13,3,16,11,9,9,3,9,0,8,4 diff --git a/conf/data/proteingym_v1/struc_seq/20/TRPC_THEMA_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/TRPC_THEMA_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..58c293a39607cb7d5099f28917b48f294a559b4d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/TRPC_THEMA_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_THEMA_Chan_2017 +3,9,9,9,16,11,9,3,11,11,3,11,11,3,3,16,3,9,9,9,4,6,4,8,8,8,8,8,8,17,17,5,17,0,8,5,17,8,8,7,8,8,2,5,5,5,5,19,19,7,8,7,8,6,8,7,7,8,8,8,13,0,3,9,9,3,9,17,9,9,17,17,4,9,17,5,5,5,5,5,19,19,8,8,8,8,7,7,7,0,17,10,4,17,9,10,4,4,9,9,4,17,17,17,5,5,5,5,19,19,17,0,9,10,9,10,4,4,4,17,8,4,4,8,17,5,5,5,5,5,19,17,4,0,4,9,9,9,4,0,3,9,9,17,9,16,4,17,0,8,17,17,17,5,5,5,5,17,17,0,3,3,0,0,9,9,17,9,9,9,9,17,19,19,5,5,5,5,19,6,6,8,8,8,8,0,8,6,8,6,3,0,17,16,3,9,4,9,3,17,6,13,19,19,19,5,5,5,5,19,19,17,0,4,10,10,4,4,4,9,8,8,8,8,17,5,5,5,5,5,5,19,8,0,8,4,9,3,3,16,10,9,10,10,10,10,4,4,10,4,4,8 diff --git a/conf/data/proteingym_v1/struc_seq/20/UBC9_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/UBC9_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f168abf5faee0fe79349017a1baaba41d5e95836 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/UBC9_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>UBC9_HUMAN_Weile_2017 +9,9,9,3,9,9,16,16,16,11,11,16,3,11,3,0,3,3,13,13,6,15,15,12,1,1,12,12,12,7,7,6,6,6,6,6,7,8,7,12,12,1,1,1,12,7,8,6,6,13,4,4,8,8,8,8,7,12,1,1,1,12,12,18,6,0,13,0,6,8,6,6,18,12,12,12,12,12,7,7,7,8,8,8,8,7,7,7,7,7,12,7,7,8,6,6,6,6,8,8,6,6,8,8,8,13,0,9,0,0,3,0,0,3,11,9,0,3,0,0,0,3,0,6,0,6,6,8,8,8,0,0,0,0,9,3,9,9,3,3,11,11,11,16,16,16,10,10,10,10,4,4,4,0,8,8,6,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta b/conf/data/proteingym_v1/struc_seq/20/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7cf01d853368d3b4a1660c0e5187725029cc080e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta @@ -0,0 +1,2 @@ +>UBE4B_HUMAN_Tsuboyama_2023_3L1X +15,8,0,6,8,8,7,8,8,0,8,8,7,8,8,8,18,18,18,12,12,7,6,6,6,12,18,18,18,0,0,18,3,11,3,0,3,3,0,0,0,8,8,0,6,6,8,8,8,0,0,15,14,18,18,12,18,0,11,0,0,11,11,0,9,11,3,16,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/UBE4B_MOUSE_Starita_2013.fasta b/conf/data/proteingym_v1/struc_seq/20/UBE4B_MOUSE_Starita_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..733233d8b4c6b3144a21b4ec3136ca8bf710d194 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/UBE4B_MOUSE_Starita_2013.fasta @@ -0,0 +1,2 @@ +>UBE4B_MOUSE_Starita_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/20/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta b/conf/data/proteingym_v1/struc_seq/20/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..20bfd88852dc0e7dfd133feb36a17843ae7b00eb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta @@ -0,0 +1,2 @@ +>UBR5_HUMAN_Tsuboyama_2023_1I2T +11,16,11,11,10,10,11,16,10,16,16,10,10,16,16,16,16,16,3,16,16,16,16,16,16,16,16,10,10,9,3,3,9,11,16,10,3,16,16,10,16,11,11,11,11,16,16,11,16,16,16,16,16,16,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/VG08_BPP22_Tsuboyama_2023_2GP8.fasta b/conf/data/proteingym_v1/struc_seq/20/VG08_BPP22_Tsuboyama_2023_2GP8.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a13c0ef3dbb0546135150dde011ac05e2d37b18c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/VG08_BPP22_Tsuboyama_2023_2GP8.fasta @@ -0,0 +1,2 @@ +>VG08_BPP22_Tsuboyama_2023_2GP8 +3,11,11,11,11,16,11,11,16,16,11,11,16,16,11,16,16,16,16,16,16,16,16,11,16,16,11,16,16,11,11,16,16,11,16,16,11,11,16,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/VILI_CHICK_Tsuboyama_2023_1YU5.fasta b/conf/data/proteingym_v1/struc_seq/20/VILI_CHICK_Tsuboyama_2023_1YU5.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5b2b743f059210d3b3719a5f52270085573ef1e7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/VILI_CHICK_Tsuboyama_2023_1YU5.fasta @@ -0,0 +1,2 @@ +>VILI_CHICK_Tsuboyama_2023_1YU5 +19,19,19,6,8,13,4,0,6,8,8,4,8,6,13,13,8,6,8,13,15,6,13,13,4,9,8,4,8,6,0,0,0,0,0,9,3,0,4,10,3,3,11,3,13,13,9,3,3,3,3,3,11,11,3,3,11,16,9,9,3,4,4,9,4 diff --git a/conf/data/proteingym_v1/struc_seq/20/VKOR1_HUMAN_Chiasson_2020_abundance.fasta b/conf/data/proteingym_v1/struc_seq/20/VKOR1_HUMAN_Chiasson_2020_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..09ac21331239697e85d4de43a41deaac5f5f6532 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/VKOR1_HUMAN_Chiasson_2020_abundance.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_abundance +15,15,13,13,3,13,3,11,16,11,16,16,16,16,10,10,16,10,10,10,16,10,16,16,16,10,16,16,16,9,16,3,9,3,3,3,3,3,3,0,4,8,6,6,6,6,19,8,8,0,4,4,8,0,9,9,9,9,9,4,9,9,4,9,9,0,0,3,3,0,3,0,13,0,13,0,0,0,4,4,10,16,9,10,16,16,10,10,16,10,10,10,16,16,10,10,9,9,3,16,3,16,16,16,16,10,16,16,10,16,16,16,16,16,11,16,16,11,11,16,9,11,9,3,3,3,3,0,17,0,0,0,0,10,10,16,16,10,16,10,10,10,16,10,10,16,16,16,16,16,16,16,16,3,3,3,13,13,13,13,13,13,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/VKOR1_HUMAN_Chiasson_2020_activity.fasta b/conf/data/proteingym_v1/struc_seq/20/VKOR1_HUMAN_Chiasson_2020_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b38eb2631d4ecbc39e679321177f9483ec1745ef --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/VKOR1_HUMAN_Chiasson_2020_activity.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_activity 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a/conf/data/proteingym_v1/struc_seq/20/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta b/conf/data/proteingym_v1/struc_seq/20/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9fa71fefb7504d0be9c38ba92e081ee8669c947b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta @@ -0,0 +1,2 @@ +>YAIA_ECOLI_Tsuboyama_2023_2KVT +15,14,14,18,18,1,1,1,1,14,14,14,14,14,15,14,14,14,12,1,1,12,12,12,12,14,7,6,6,6,14,7,14,12,14,12,1,18,18,18,3,13,18,0,11,0,18,3,11,18,18,0 diff --git a/conf/data/proteingym_v1/struc_seq/20/YAP1_HUMAN_Araya_2012.fasta b/conf/data/proteingym_v1/struc_seq/20/YAP1_HUMAN_Araya_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1c3113d0b2d53e3f594d0ed669c2886f26498bea --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/YAP1_HUMAN_Araya_2012.fasta @@ -0,0 +1,2 @@ +>YAP1_HUMAN_Araya_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/20/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta b/conf/data/proteingym_v1/struc_seq/20/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..637163d66e2dad2dc34e45abaacef2629bfca643 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta @@ -0,0 +1,2 @@ +>YNZC_BACSU_Tsuboyama_2023_2JVD +15,3,3,3,11,16,16,11,16,16,11,16,16,16,11,16,16,11,16,3,9,16,9,3,3,16,16,11,16,16,16,11,16,16,11,3,9,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/2048/A0A140D2T1_ZIKV_Sourisseau_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/A0A140D2T1_ZIKV_Sourisseau_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2250a47605b52eb61a029357b4165cb78f33f4c5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/A0A140D2T1_ZIKV_Sourisseau_2019.fasta @@ -0,0 +1,2 @@ +>A0A140D2T1_ZIKV_Sourisseau_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/A0A1I9GEU1_NEIME_Kennouche_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/A0A1I9GEU1_NEIME_Kennouche_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9c83d98f30c505dbd4531b70416b391ee76751f6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/A0A1I9GEU1_NEIME_Kennouche_2019.fasta @@ -0,0 +1,2 @@ +>A0A1I9GEU1_NEIME_Kennouche_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/A0A2Z5U3Z0_9INFA_Wu_2014.fasta b/conf/data/proteingym_v1/struc_seq/2048/A0A2Z5U3Z0_9INFA_Wu_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..58da4214169c09f317a20960e871c8c627ff5c47 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/A0A2Z5U3Z0_9INFA_Wu_2014.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Wu_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/A4D664_9INFA_Soh_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/A4D664_9INFA_Soh_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7caae7b55edd3a404031cc129d56e546e34f05ca --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/A4D664_9INFA_Soh_2019.fasta @@ -0,0 +1,2 @@ +>A4D664_9INFA_Soh_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/A4GRB6_PSEAI_Chen_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/A4GRB6_PSEAI_Chen_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..950e472a382494d6d36eff9d6a51423f564743c1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/A4GRB6_PSEAI_Chen_2020.fasta @@ -0,0 +1,2 @@ +>A4GRB6_PSEAI_Chen_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/A4_HUMAN_Seuma_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/A4_HUMAN_Seuma_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b67d9effaf1c99d51432ce80b1511bd071504dc8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/A4_HUMAN_Seuma_2022.fasta @@ -0,0 +1,2 @@ +>A4_HUMAN_Seuma_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/AACC1_PSEAI_Dandage_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/AACC1_PSEAI_Dandage_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0f666fd3e7a4492f5d425d6673266cf8562f0922 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/AACC1_PSEAI_Dandage_2018.fasta @@ -0,0 +1,2 @@ +>AACC1_PSEAI_Dandage_2018 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0000000000000000000000000000000000000000..1f2155f874d607ec0a0229217e13cf789a0a3a2d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ACE2_HUMAN_Chan_2020.fasta @@ -0,0 +1,2 @@ +>ACE2_HUMAN_Chan_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/ADRB2_HUMAN_Jones_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/ADRB2_HUMAN_Jones_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..18abdfdfc41618dbbe9e3ec7f5c702f988b3dc77 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ADRB2_HUMAN_Jones_2020.fasta @@ -0,0 +1,2 @@ +>ADRB2_HUMAN_Jones_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/AICDA_HUMAN_Gajula_2014_3cycles.fasta b/conf/data/proteingym_v1/struc_seq/2048/AICDA_HUMAN_Gajula_2014_3cycles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..df3b191f91754d7f967f1469aaa7cc836b13cbbc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/AICDA_HUMAN_Gajula_2014_3cycles.fasta @@ -0,0 +1,2 @@ +>AICDA_HUMAN_Gajula_2014_3cycles 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b/conf/data/proteingym_v1/struc_seq/2048/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cd04af8748b3fa9e248e0950d2137625382509ab --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta @@ -0,0 +1,2 @@ +>AMFR_HUMAN_Tsuboyama_2023_4G3O +195,1487,1487,1221,134,1725,1442,1032,1691,137,1227,1032,1024,846,361,361,1,758,335,812,1857,1075,355,1746,642,1227,2025,1634,1691,129,1444,953,807,1147,1187,1147,547,720,1506,1444,1506,720,1444,1444,1444,846,1770 diff --git a/conf/data/proteingym_v1/struc_seq/2048/AMIE_PSEAE_Wrenbeck_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/AMIE_PSEAE_Wrenbeck_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..69eb83114626d2fcb7ea09574bc084d3be55f4ab --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/AMIE_PSEAE_Wrenbeck_2017.fasta @@ -0,0 +1,2 @@ +>AMIE_PSEAE_Wrenbeck_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/ANCSZ_Hobbs_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/ANCSZ_Hobbs_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..71cbb4d96d228b6e52677675dc012ccecb2dbd59 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ANCSZ_Hobbs_2022.fasta @@ -0,0 +1,2 @@ +>ANCSZ_Hobbs_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta b/conf/data/proteingym_v1/struc_seq/2048/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..52f22f12c1af459f65347456054d203eb7ee4eb5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta @@ -0,0 +1,2 @@ +>ARGR_ECOLI_Tsuboyama_2023_1AOY +195,1221,1221,242,523,1221,1032,533,1165,1256,257,237,1524,766,155,136,766,1831,1952,257,355,2015,1539,1604,1506,1829,1746,1222,881,1568,1456,1075,812,1061,1454,1656,355,876,631,377,2003,682,580,1084,1036,2000,529,1919,1009,2045,307,302,438,438,7,1446,473,438,362,70,2045,252,53,1127,1820,1039,1935,497,1704 diff --git a/conf/data/proteingym_v1/struc_seq/2048/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta b/conf/data/proteingym_v1/struc_seq/2048/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6deeccd752f8941ea37d24d014180fa111dcfcf4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta @@ -0,0 +1,2 @@ +>B2L11_HUMAN_Dutta_2010_binding-Mcl-1 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b/conf/data/proteingym_v1/struc_seq/2048/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..875f55bf66a8db97106e8c54072f9928fe5c1e75 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta @@ -0,0 +1,2 @@ +>BBC1_YEAST_Tsuboyama_2023_1TG0 +1835,1710,207,914,459,1415,379,917,1738,1863,1863,815,576,1923,1396,1798,1798,902,1183,1183,576,815,1863,1863,175,343,508,2005,2005,135,339,142,1450,1544,1007,1734,474,1211,1493,1874,658,232,1710,1771,545,7,7,473,473,545,628,142,628,1556,1747,1211,559,530,1821,1574,791,1846,342,1058 diff --git a/conf/data/proteingym_v1/struc_seq/2048/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta b/conf/data/proteingym_v1/struc_seq/2048/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cb34577580d4857445852530acffa7666656cd29 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta @@ -0,0 +1,2 @@ +>BCHB_CHLTE_Tsuboyama_2023_2KRU +1936,1936,563,1037,884,1171,94,94,1171,1,1258,287,1454,481,1454,481,1,1222,1506,953,953,682,802,1077,1697,862,604,489,632,1829,1815,2046,1948,38,1167,1814,2047,669,702,235,1669,1075,1489,1339,355,355,1495,642,1640,320,320,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Deng_2012.fasta b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Deng_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6971af19707d025a189fb9985155bb22a1371116 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Deng_2012.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Deng_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Firnberg_2014.fasta b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Firnberg_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d72b7b2b9a3c6388e381a9378d73aa77d728e0ff --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Firnberg_2014.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Firnberg_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Jacquier_2013.fasta b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Jacquier_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..305f2fa3cd8c63eab5f6f2d3c0de4f2306e57356 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Jacquier_2013.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Jacquier_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Stiffler_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Stiffler_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1d650ea4fca2ba6015cf280ec54e0e8e93fadcaf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BLAT_ECOLX_Stiffler_2015.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Stiffler_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/BRCA1_HUMAN_Findlay_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/BRCA1_HUMAN_Findlay_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e95c5f898bebcc6c257e020100bc2bda43b35aa5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BRCA1_HUMAN_Findlay_2018.fasta @@ -0,0 +1,2 @@ +>BRCA1_HUMAN_Findlay_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/2048/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4e71fffecd294f1579048fddfb51217959618628 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>BRCA2_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/C6KNH7_9INFA_Lee_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/C6KNH7_9INFA_Lee_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c0e5cb034f129d03698c488a98bdb48abfc077a8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/C6KNH7_9INFA_Lee_2018.fasta @@ -0,0 +1,2 @@ +>C6KNH7_9INFA_Lee_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CALM1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/CALM1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f952043109f778585b51c2da0dea3df91d58f595 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CALM1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>CALM1_HUMAN_Weile_2017 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b/conf/data/proteingym_v1/struc_seq/2048/CAPSD_AAV2S_Sinai_2021.fasta @@ -0,0 +1,2 @@ +>CAPSD_AAV2S_Sinai_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CAR11_HUMAN_Meitlis_2020_gof.fasta b/conf/data/proteingym_v1/struc_seq/2048/CAR11_HUMAN_Meitlis_2020_gof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ff5be0d0c9d9e2d4828e48b263863796c19ba845 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CAR11_HUMAN_Meitlis_2020_gof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_gof 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CAR11_HUMAN_Meitlis_2020_lof.fasta b/conf/data/proteingym_v1/struc_seq/2048/CAR11_HUMAN_Meitlis_2020_lof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7843f5ff649fcabe72fb95716a334b06f843f5e9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CAR11_HUMAN_Meitlis_2020_lof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_lof 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CAS9_STRP1_Spencer_2017_positive.fasta b/conf/data/proteingym_v1/struc_seq/2048/CAS9_STRP1_Spencer_2017_positive.fasta new file mode 100644 index 0000000000000000000000000000000000000000..28aa739a1f12ec5769d76c630015a22438484776 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CAS9_STRP1_Spencer_2017_positive.fasta @@ -0,0 +1,2 @@ +>CAS9_STRP1_Spencer_2017_positive 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CASP3_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/CASP3_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6f9571eb04db02783d4e4a13378bfccbfed9b77e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CASP3_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP3_HUMAN_Roychowdhury_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CASP7_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/CASP7_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..865ea39ed85fb7dbdf5dd9637fd449ce7dc0429a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CASP7_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP7_HUMAN_Roychowdhury_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta b/conf/data/proteingym_v1/struc_seq/2048/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fa058cd384f5f28d66dff7c1c022b2ea4c08444c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta @@ -0,0 +1,2 @@ +>CATR_CHLRE_Tsuboyama_2023_2AMI +88,656,40,40,49,1812,242,289,363,267,267,66,1032,1543,616,1829,761,715,133,1478,950,754,1127,945,1195,1195,257,1021,257,257,1418,1301,882,1301,954,954,954,1857,641,1246,1636,1290,1418,1639,1547,355,257,1147,1829,1328,691,616,1536,133,1181,964,950,2033,1127,1195,1195,1195,674,457,457,1418,1500,1049,310,320,1372,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta b/conf/data/proteingym_v1/struc_seq/2048/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..951a81942d7193c4baad219fea6ad5c23b1e5747 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta @@ -0,0 +1,2 @@ +>CBPA2_HUMAN_Tsuboyama_2023_1O6X +1648,1633,1450,1544,1849,330,44,1126,2018,1843,729,155,1486,1370,1090,766,49,605,1045,1616,603,1454,869,230,645,1565,1637,416,1685,1504,1998,79,1124,93,1299,308,1053,814,729,1261,814,508,159,809,1665,559,381,890,1371,2023,1254,298,49,1048,1256,1517,2000,580,1143,164,2000,355,700,743,1027,79,566,1302,1320,892,207,1835 diff --git a/conf/data/proteingym_v1/struc_seq/2048/CBS_HUMAN_Sun_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/CBS_HUMAN_Sun_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d513925363d6922143f682872683e29095d403a3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CBS_HUMAN_Sun_2020.fasta @@ -0,0 +1,2 @@ +>CBS_HUMAN_Sun_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta b/conf/data/proteingym_v1/struc_seq/2048/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta new file mode 100644 index 0000000000000000000000000000000000000000..26f4f5d9553ecfdebd52958a0fe3460aa688f478 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta @@ -0,0 +1,2 @@ +>CBX4_HUMAN_Tsuboyama_2023_2K28 +74,1653,1633,1299,1830,441,1710,1447,339,33,772,923,923,678,1447,295,1447,824,1321,1200,13,13,498,1020,1057,1598,28,28,1200,1200,694,193,1447,474,485,485,668,645,1226,547,1304,2010,691,134,747,298,1498,1640,368,1498 diff --git a/conf/data/proteingym_v1/struc_seq/2048/CCDB_ECOLI_Adkar_2012.fasta b/conf/data/proteingym_v1/struc_seq/2048/CCDB_ECOLI_Adkar_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..493dc52b8d91ad6f4685c59435f6be6aca064ec6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CCDB_ECOLI_Adkar_2012.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Adkar_2012 +1255,362,1410,1574,1156,484,1156,1821,917,1395,1923,1396,1709,576,576,654,484,1350,1929,1769,117,1597,1437,1596,1644,1396,971,1007,971,971,13,1929,1415,10,10,1415,10,1211,199,1598,1331,374,1039,1039,1989,1476,1646,97,1824,1865,76,1626,1891,199,908,1575,475,1186,275,199,1447,193,1891,1643,1364,1198,906,1940,1947,1858,1842,971,51,1242,1839,791,522,1156,1562,1562,917,729,1831,1685,1226,1246,415,682,1887,1815,1676,1887,635,1824,1824,635,635,816,1731,318,1731 diff --git a/conf/data/proteingym_v1/struc_seq/2048/CCDB_ECOLI_Tripathi_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/CCDB_ECOLI_Tripathi_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..28dab66249c98e879dfd21abca9c37610db17ca2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CCDB_ECOLI_Tripathi_2016.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Tripathi_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta b/conf/data/proteingym_v1/struc_seq/2048/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f525d420ed5b084e7418bcc4061a988af74e88e0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta @@ -0,0 +1,2 @@ +>CD19_HUMAN_Klesmith_2019_FMC_singles 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CP2C9_HUMAN_Amorosi_2021_abundance.fasta b/conf/data/proteingym_v1/struc_seq/2048/CP2C9_HUMAN_Amorosi_2021_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c618e9ed72733e62df1f385a00e8f38c00a8c923 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CP2C9_HUMAN_Amorosi_2021_abundance.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_abundance 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CP2C9_HUMAN_Amorosi_2021_activity.fasta b/conf/data/proteingym_v1/struc_seq/2048/CP2C9_HUMAN_Amorosi_2021_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..856229f338a0d3a8c7cdddc33ceacef50e6ad275 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CP2C9_HUMAN_Amorosi_2021_activity.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta b/conf/data/proteingym_v1/struc_seq/2048/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..92a6d14f2d253f860ca396c60243635600c02699 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta @@ -0,0 +1,2 @@ +>CSN4_MOUSE_Tsuboyama_2023_1UFM +1809,1809,1355,1593,270,270,1226,20,1900,124,767,1032,1177,1439,1032,267,533,793,1490,1408,1128,651,651,1340,1299,1611,1647,1603,674,114,1707,4,882,1282,2001,1829,882,882,2003,882,1064,2003,1064,257,898,898,681,1498,1038,217,1886,164,1325,1552,816,1745,1270,15,233,1843,1356,331,1910,1053,510,370,1728,68,1580,792,351,1066 diff --git a/conf/data/proteingym_v1/struc_seq/2048/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta b/conf/data/proteingym_v1/struc_seq/2048/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta new file mode 100644 index 0000000000000000000000000000000000000000..07fe17e89a3435dc2bcef6ec3e571694fb7d17a8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta @@ -0,0 +1,2 @@ +>CUE1_YEAST_Tsuboyama_2023_2MYX +1708,218,1270,763,762,745,1004,1248,1368,377,1777,1136,72,412,1444,169,1634,758,1061,1825,1366,1656,1366,3,1123,857,247,1712,1466,689,689,133,828,1008,1187,1024,1568,1064,43,1948,1304,1887,425,1036,164,164,1392,763,1243,218,1486,687 diff --git a/conf/data/proteingym_v1/struc_seq/2048/D7PM05_CLYGR_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/D7PM05_CLYGR_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4ecd83d181ccd698afc2548c17d0653875060e82 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/D7PM05_CLYGR_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>D7PM05_CLYGR_Somermeyer_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/DLG4_HUMAN_Faure_2021.fasta b/conf/data/proteingym_v1/struc_seq/2048/DLG4_HUMAN_Faure_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d5621ee30736f6644b2f155423641925cc00bc13 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/DLG4_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>DLG4_HUMAN_Faure_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/DLG4_RAT_McLaughlin_2012.fasta b/conf/data/proteingym_v1/struc_seq/2048/DLG4_RAT_McLaughlin_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d77bdfdf25cc4dd7bf12f5b8a78ed90cfe7e7ab9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/DLG4_RAT_McLaughlin_2012.fasta @@ -0,0 +1,2 @@ +>DLG4_RAT_McLaughlin_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta b/conf/data/proteingym_v1/struc_seq/2048/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c5d455ca7c4f3350156a6ee4a089b174cf5eb4c9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta @@ -0,0 +1,2 @@ +>DN7A_SACS2_Tsuboyama_2023_1JIC +1648,2007,1228,1561,1771,1228,923,923,313,1771,1228,1228,577,1597,906,1597,678,1493,694,1156,1567,5,1599,1599,1305,275,1341,1599,1239,986,1352,248,678,1854,1413,710,710,1396,545,33,1567,290,1567,619,1341,1013,1791,1598,1163,721,1704,1162,1027,317,736 diff --git a/conf/data/proteingym_v1/struc_seq/2048/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta b/conf/data/proteingym_v1/struc_seq/2048/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8212fb875d358cede0bb4f3dbcc63e0c6a5b4e5c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta @@ -0,0 +1,2 @@ +>DNJA1_HUMAN_Tsuboyama_2023_2LO1 +496,690,1193,538,1778,537,1140,538,2030,2042,1333,959,1238,16,750,1616,878,171,377,341,1001,1739,1691,1811,649,802,624,624,1460,1460,1460,1207,250,250,250,361,1226,361,1638,75,1541,265,137,995,278,1691,1001,1893,1097,1568,2025,1188,1404,1253,20,1616,1568,1811,1304,1938,355,1697,558,717,1162 diff --git a/conf/data/proteingym_v1/struc_seq/2048/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta b/conf/data/proteingym_v1/struc_seq/2048/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta new file mode 100644 index 0000000000000000000000000000000000000000..30fa321cb332333017bfa98b16c32711e8a1b473 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta @@ -0,0 +1,2 @@ +>DOCK1_MOUSE_Tsuboyama_2023_2M0Y 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b/conf/data/proteingym_v1/struc_seq/2048/DYR_ECOLI_Thompson_2019.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Thompson_2019 +1668,955,1318,2031,1125,583,1698,647,596,151,390,1414,657,390,1892,544,1880,1871,1758,1121,1502,1276,813,407,1452,147,1247,1954,230,869,1966,1090,230,800,1705,1852,1705,1180,1554,933,1996,444,1141,1141,827,1184,1141,2030,2030,1010,1857,374,401,85,542,779,1180,1782,90,1996,1699,841,440,1668,462,687,1969,1396,319,486,1833,241,774,440,1141,526,1931,1040,717,1966,841,1334,1522,938,132,2041,501,1323,1668,805,805,1679,933,444,1141,820,505,1806,1308,118,855,830,1399,1185,800,1806,1804,1718,455,823,1144,285,1614,276,226,1703,808,91,1121,120,1416,390,120,1374,1374,1047,1773,803,131,971,829,588,559,109,569,1630,986,892,160,448,1932,307,70,1531,430,1772,530,1895,2040,1148,332,1963,821,1784,1784,1690,1690,588,10 diff --git a/conf/data/proteingym_v1/struc_seq/2048/ENVZ_ECOLI_Ghose_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/ENVZ_ECOLI_Ghose_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..62ce097046867ade11262bd391479300f672585c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ENVZ_ECOLI_Ghose_2023.fasta @@ -0,0 +1,2 @@ +>ENVZ_ECOLI_Ghose_2023 +195,1372,1487,1221,1725,1725,1906,1906,320,439,1906,1885,267,1032,1906,267,439,66,1032,439,1032,66,1442,1756,1383,129,1147,378,750,1075,1620,447,447,1620,1506,1222,953,1147,580,1767,1442,1756,898,896,267,267,1906,267,267,1906,1906,267,898,1906,1111,1739,1111,1640,642,625 diff --git a/conf/data/proteingym_v1/struc_seq/2048/ENV_HV1B9_DuenasDecamp_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/ENV_HV1B9_DuenasDecamp_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fa2da489520168e5fafbef4566db1bfd3399750b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ENV_HV1B9_DuenasDecamp_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1B9_DuenasDecamp_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/ENV_HV1BR_Haddox_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/ENV_HV1BR_Haddox_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8d678f8a45ddb1a0a4f04e09590d5f0a3839cf54 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ENV_HV1BR_Haddox_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1BR_Haddox_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta b/conf/data/proteingym_v1/struc_seq/2048/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..942dec31385c5fe7ac829b5821fc4cef212a804b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta @@ -0,0 +1,2 @@ +>EPHB2_HUMAN_Tsuboyama_2023_1F0M +2023,656,88,113,457,575,1206,531,38,608,2043,802,1541,412,934,1272,412,412,513,271,952,271,271,1568,271,1075,1938,668,127,130,777,878,413,1229,413,413,355,1857,866,323,481,240,1634,1008,1188,447,757,757,1178,1004,481,341,1454,1786,377,1906,896,1746,265,898,1487,320,1111,368,1111,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/ERBB2_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/ERBB2_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2e66fce3ba4beb465b6ad99f7f82b5c08fa3ea5c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ERBB2_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>ERBB2_HUMAN_Elazar_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/ESTA_BACSU_Nutschel_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/ESTA_BACSU_Nutschel_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..81e7179d07233e94b0947ecaf83d2150d32e1c7c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ESTA_BACSU_Nutschel_2020.fasta @@ -0,0 +1,2 @@ +>ESTA_BACSU_Nutschel_2020 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a/conf/data/proteingym_v1/struc_seq/2048/F7YBW7_MESOW_Ding_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/F7YBW7_MESOW_Ding_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d58a137a77d5637674cd31c70a58f02c7dd5d194 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/F7YBW7_MESOW_Ding_2023.fasta @@ -0,0 +1,2 @@ +>F7YBW7_MESOW_Ding_2023 +740,19,19,19,1199,209,209,209,209,478,2021,2021,56,289,963,2015,363,1032,1038,1038,1638,846,1506,1460,121,1731,1460,1506,640,846,1506,761,953,1506,265,66,1906,1906,1906,1906,1906,1906,1906,66,66,66,66,66,66,66,66,66,66,66,1906,1906,1906,1906,1906,1906,1906,1459,963,757,1178,62,1507,501,503,209,722,1507,2021,56,289,289,1640,363,1906,1906,1906,1906,1459,1459,1178,1178,1178,777,1039,1039,1133,1133,1133 diff --git a/conf/data/proteingym_v1/struc_seq/2048/F7YBW8_MESOW_Aakre_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/F7YBW8_MESOW_Aakre_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b1c7db894698ec26cf77e639bc9edaf6c5c1cd20 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/F7YBW8_MESOW_Aakre_2015.fasta @@ -0,0 +1,2 @@ +>F7YBW8_MESOW_Aakre_2015 +740,19,19,19,1199,209,209,209,209,478,2021,2021,56,289,963,2015,363,1032,1038,1038,1638,846,1506,1460,121,1731,1460,1506,640,846,1506,761,953,1506,265,66,1906,1906,1906,1906,1906,1906,1906,66,66,66,66,66,66,66,66,66,66,66,1906,1906,1906,1906,1906,1906,1906,1459,963,757,1178,62,1507,501,503,209,722,1507,2021,56,289,289,1640,363,1906,1906,1906,1906,1459,1459,1178,1178,1178,777,1039,1039,1133,1133,1133 diff --git a/conf/data/proteingym_v1/struc_seq/2048/FECA_ECOLI_Tsuboyama_2023_2D1U.fasta b/conf/data/proteingym_v1/struc_seq/2048/FECA_ECOLI_Tsuboyama_2023_2D1U.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2aa3752b298b7c55a6fd4fd83c8e76584186b54b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/FECA_ECOLI_Tsuboyama_2023_2D1U.fasta @@ -0,0 +1,2 @@ +>FECA_ECOLI_Tsuboyama_2023_2D1U +1835,1450,1450,1299,746,1237,506,838,1603,449,1130,402,491,1498,747,1904,2032,1036,1825,1778,1918,780,1184,1743,556,1743,1030,198,254,1504,350,514,688,350,152,1209,42,1891,308,1493,1835,1737,736,736,1408,1099,380,102,1980,187,148,1603,1195,1392,555,697,763,1163,2007,1027,1690,1463,1473,1860,91,738,504,1718,47,1690,393,1043 diff --git a/conf/data/proteingym_v1/struc_seq/2048/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta b/conf/data/proteingym_v1/struc_seq/2048/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..af75f18fe06cde3eb0133ecb92e9093c2b2e44fe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta @@ -0,0 +1,2 @@ +>FKBP3_HUMAN_Tsuboyama_2023_2KFV 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/GCN4_YEAST_Staller_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/GCN4_YEAST_Staller_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..80c2ebbaa71af22b6a6f21ab7e975c4b8d6633ce --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/GCN4_YEAST_Staller_2018.fasta @@ -0,0 +1,2 @@ +>GCN4_YEAST_Staller_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/GDIA_HUMAN_Silverstein_2021.fasta b/conf/data/proteingym_v1/struc_seq/2048/GDIA_HUMAN_Silverstein_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e639c52ebc19faa6661fca08fefc62b1486b934d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/GDIA_HUMAN_Silverstein_2021.fasta @@ -0,0 +1,2 @@ +>GDIA_HUMAN_Silverstein_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/GFP_AEQVI_Sarkisyan_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/GFP_AEQVI_Sarkisyan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6f5afea9063f87a9e8094398600edb7c3632498d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/GFP_AEQVI_Sarkisyan_2016.fasta @@ -0,0 +1,2 @@ +>GFP_AEQVI_Sarkisyan_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/GLPA_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/GLPA_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7fceb5099bb6484c2ce488b7839c00553b6704d2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/GLPA_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>GLPA_HUMAN_Elazar_2016 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b/conf/data/proteingym_v1/struc_seq/2048/GRB2_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>GRB2_HUMAN_Faure_2021 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a/conf/data/proteingym_v1/struc_seq/2048/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta b/conf/data/proteingym_v1/struc_seq/2048/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta new file mode 100644 index 0000000000000000000000000000000000000000..904679e204b19d2c1b2dce6badebab1881b64952 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta @@ -0,0 +1,2 @@ +>HCP_LAMBD_Tsuboyama_2023_2L6Q +40,1595,523,449,593,1500,632,1084,529,1495,1256,1601,1432,843,2046,529,913,1948,463,851,1364,1626,1292,199,1209,1617,15,542,923,1771,1298,1298,1512,1292,1626,369,698,1045,698,124,1954,87,112,682,896,439,896,581,1442,320,1640,1111,320,1639,2029 diff --git a/conf/data/proteingym_v1/struc_seq/2048/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta b/conf/data/proteingym_v1/struc_seq/2048/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7e141d5489c251480b124ad341a1b444ee6f1a88 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta @@ -0,0 +1,2 @@ +>HECD1_HUMAN_Tsuboyama_2023_3DKM +195,195,632,523,1697,651,53,103,92,589,1260,0,0,1196,791,2018,1754,822,1645,1561,1080,1080,1820,1510,1724,1724,1174,729,879,1475,122,1975,1675,2018,2018,1877,1350,1853,1153,362,1706,1298,1973,1298,1298,1706,135,459,1268,2018,1877,776,893,1182,772,1713,694,33,1182,308,331,1802,765,1166,1675,2019,1735,1788,506,305,1078,1964 diff --git a/conf/data/proteingym_v1/struc_seq/2048/HEM3_HUMAN_Loggerenberg_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/HEM3_HUMAN_Loggerenberg_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..be9d71848d04ac8590b4517bcd89fb7651c2ed05 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HEM3_HUMAN_Loggerenberg_2023.fasta @@ -0,0 +1,2 @@ +>HEM3_HUMAN_Loggerenberg_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/HIS7_YEAST_Pokusaeva_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/HIS7_YEAST_Pokusaeva_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..00714b5763f09bca542dd90cdafef3327018cf1a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HIS7_YEAST_Pokusaeva_2019.fasta @@ -0,0 +1,2 @@ +>HIS7_YEAST_Pokusaeva_2019 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a/conf/data/proteingym_v1/struc_seq/2048/HMDH_HUMAN_Jiang_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/HMDH_HUMAN_Jiang_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fb7a78ba03b5cf736b9997b0cbdea1f556d731ed --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HMDH_HUMAN_Jiang_2019.fasta @@ -0,0 +1,2 @@ +>HMDH_HUMAN_Jiang_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta b/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d176274c0c27b2a8de27ea70e1b5eeda344bb36e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Flynn_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Flynn_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..65ff179004ef77f1f87fa42b0eea59b07d44b2fc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Flynn_2019.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Flynn_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Mishra_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Mishra_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d84067d71621f2f6ce18504af9a62308bf1e362b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HSP82_YEAST_Mishra_2016.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Mishra_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/HXK4_HUMAN_Gersing_2022_activity.fasta b/conf/data/proteingym_v1/struc_seq/2048/HXK4_HUMAN_Gersing_2022_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1a6703fa672e40267a3d4829d94593814d522bb1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HXK4_HUMAN_Gersing_2022_activity.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2022_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/HXK4_HUMAN_Gersing_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/2048/HXK4_HUMAN_Gersing_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..483ed26d8d0276f2cf5ff0a4976f9ba1cdfaf05f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/HXK4_HUMAN_Gersing_2023_abundance.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2023_abundance 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/I6TAH8_I68A0_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/I6TAH8_I68A0_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d7e5311a18dbb0624857cd54677d83511990af54 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/I6TAH8_I68A0_Doud_2015.fasta @@ -0,0 +1,2 @@ +>I6TAH8_I68A0_Doud_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/IF1_ECOLI_Kelsic_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/IF1_ECOLI_Kelsic_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b7cc56c5ded184af153aa62161d3cd215fe57881 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/IF1_ECOLI_Kelsic_2016.fasta @@ -0,0 +1,2 @@ +>IF1_ECOLI_Kelsic_2016 +1355,665,1355,73,327,1688,96,1562,1415,1929,1415,484,824,1148,1932,248,886,1923,1305,1305,345,418,1632,484,694,1512,1321,1395,545,1182,1926,1915,887,1119,1119,151,1743,328,1337,131,1978,1900,640,1857,1624,9,502,966,343,343,1932,339,135,459,1632,1632,1926,139,1242,1820,1880,666,151,1119,1119,276,887,1690,1069,93,342,1499 diff --git a/conf/data/proteingym_v1/struc_seq/2048/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta b/conf/data/proteingym_v1/struc_seq/2048/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4a1a88bfe614245d77081533d7e274ec3015c1d9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta @@ -0,0 +1,2 @@ +>ILF3_HUMAN_Tsuboyama_2023_2L33 +679,228,529,618,1041,517,1290,529,1547,695,612,1263,1516,388,558,312,1329,1358,1309,375,1173,79,1889,389,569,1173,188,1768,1768,1768,1730,28,1923,303,1211,199,414,199,707,1043,1599,233,542,923,923,1341,1344,381,1344,1949,1344,1998,1949,1842,262,1559,1344,222,3,1402,620,1603,529,1433,1871,4,1167,1636,816,1731,1548 diff --git a/conf/data/proteingym_v1/struc_seq/2048/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta b/conf/data/proteingym_v1/struc_seq/2048/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0163c12f31aa88d3ba851f22408d8f6a9fd3555a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta @@ -0,0 +1,2 @@ +>ISDH_STAAW_Tsuboyama_2023_2LHR +354,1812,1132,570,570,846,1674,1456,1008,412,768,1532,1004,1532,1620,1111,1616,1075,921,802,87,1187,1520,1227,1811,699,271,1152,378,378,1152,1167,447,1152,846,1304,682,500,580,267,519,439,896,898,439,439,898,898,1032,1111,1640,134,1640,1640,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/KCNE1_HUMAN_Muhammad_2023_expression.fasta b/conf/data/proteingym_v1/struc_seq/2048/KCNE1_HUMAN_Muhammad_2023_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f1b5b45c2acef41dddc06e7967cde606e0a2affb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/KCNE1_HUMAN_Muhammad_2023_expression.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_expression +1809,740,1809,301,1867,1565,645,645,230,1650,603,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1459,1650,639,645,645,1565,1867,1039,1986,1986,1039,1039,1565,1342,230,230,1459,1459,1459,682,682,682,682,682,881,881,682,881,881,682,682,682,682,682,66,1906,1906,1906,1906,66,66,66,66,66,1906,1459,230,645,645,1565,1565,1586,1867,1867,1867,1867,1867,270,270,645,230,230,1650,682,682,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1459,1459,1697,1812,1697,56,2021,1496,710,1989,1215,993,993,993,993,993,993,1986,1215,1989,1989,204,204,204,204,486,1823,1823,1823 diff --git a/conf/data/proteingym_v1/struc_seq/2048/KCNE1_HUMAN_Muhammad_2023_function.fasta b/conf/data/proteingym_v1/struc_seq/2048/KCNE1_HUMAN_Muhammad_2023_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..54bb2a0b8030201490edc0d8b9f3017511684e0c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/KCNE1_HUMAN_Muhammad_2023_function.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_function +1809,740,1809,301,1867,1565,645,645,230,1650,603,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1459,1650,639,645,645,1565,1867,1039,1986,1986,1039,1039,1565,1342,230,230,1459,1459,1459,682,682,682,682,682,881,881,682,881,881,682,682,682,682,682,66,1906,1906,1906,1906,66,66,66,66,66,1906,1459,230,645,645,1565,1565,1586,1867,1867,1867,1867,1867,270,270,645,230,230,1650,682,682,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1459,1459,1697,1812,1697,56,2021,1496,710,1989,1215,993,993,993,993,993,993,1986,1215,1989,1989,204,204,204,204,486,1823,1823,1823 diff --git a/conf/data/proteingym_v1/struc_seq/2048/KCNH2_HUMAN_Kozek_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/KCNH2_HUMAN_Kozek_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..70fd3a7bebba9d81c29cb818aa62e7965422e53e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/KCNH2_HUMAN_Kozek_2020.fasta @@ -0,0 +1,2 @@ +>KCNH2_HUMAN_Kozek_2020 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1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,209,209,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787 diff --git a/conf/data/proteingym_v1/struc_seq/2048/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta b/conf/data/proteingym_v1/struc_seq/2048/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..90cebc08ba947e8f521b2afcc94b7219b5305a0f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_function +1230,1787,1787,1623,420,1623,486,722,420,1623,1787,1787,1787,1787,1787,1787,1623,1623,918,918,918,1046,1046,486,722,209,209,209,209,209,722,722,1046,710,1989,1215,993,1836,993,993,37,234,1773,610,1437,492,822,68,1182,68,1805,1974,919,362,1973,74,722,486,486,1989,1215,777,1565,645,645,547,415,547,547,682,881,682,1691,129,415,1566,921,349,378,413,1075,963,1616,1177,134,1906,1032,267,1104,1906,1032,385,1104,1906,1265,1265,1553,533,1553,604,1553,1553,1265,1829,500,1693,531,169,156,12,1508,234,37,696,234,1986,1986,1989,964,868,555,1573,152,701,701,1195,999,951,1495,706,1781,1045,642,927,1654,1553,874,1620,1680,1520,699,271,361,64,1535,756,964,1504,1122,701,1410,445,445,1979,481,75,1938,1536,363,896,1001,1701,1701,1001,1227,896,896,519,581,1906,1756,267,1906,896,267,1906,896,1701,896,341,1177,1943,1454,103,1555,46,1474,103,146,626,1277,136,1611,1231,305,653,629,226,726,823,887,657,557,1874,313,923,275,804,248,189,1963,1784,809,1889,1070,822,1356,1484,1596,1924,1631,791,1821,1821,1929,1711,1100,109,1665,1846,330,330,1562,1499,1200,1395,473,1783,7,473,1783,1395,966,1499,1562,339,1562,1562,1512,1610,678,438,517,1392,1378,1461,1478,1409,1410,822,1717,577,792,577,1894,1070,1078,1088,928,1268,2018,1717,1481,1727,37,458,1758,1120,1602,1573,1785,1101,945,1409,1240,626,294,595,349,1570,1340,1043,559,653,499,586,795,586,1754,1874,906,888,70,197,909,197,1602,888,673,1613,1841,653,1990,844,760,844,1194,1330,338,1353,1866,1034,332,1072,36,1696,822,316,1831,1200,824,1768,1768,475,475,1186,1768,248,1529,1529,1876,956,1797,705,168,944,1131,1326,771,1326,1385,186,1385,1242,155,1528,945,766,1672,1403,1067,2036,363,1906,1906,1906,1906,66,66,1906,1906,1906,66,1906,66,66,66,1906,1906,1906,1906,1906,1906,1906,1906,1906,1459,1459,230,1178,757,831,1039,204,1623,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1623,209,722,722,209,1623,722,1623,722,722,722,209,209,209,209,209,194,194 diff --git a/conf/data/proteingym_v1/struc_seq/2048/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta b/conf/data/proteingym_v1/struc_seq/2048/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta new file mode 100644 index 0000000000000000000000000000000000000000..16201aae9aa1c839d453d8bc76c5c7642d7d5c80 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_surface +1230,1787,1787,1623,420,1623,486,722,420,1623,1787,1787,1787,1787,1787,1787,1623,1623,918,918,918,1046,1046,486,722,209,209,209,209,209,722,722,1046,710,1989,1215,993,1836,993,993,37,234,1773,610,1437,492,822,68,1182,68,1805,1974,919,362,1973,74,722,486,486,1989,1215,777,1565,645,645,547,415,547,547,682,881,682,1691,129,415,1566,921,349,378,413,1075,963,1616,1177,134,1906,1032,267,1104,1906,1032,385,1104,1906,1265,1265,1553,533,1553,604,1553,1553,1265,1829,500,1693,531,169,156,12,1508,234,37,696,234,1986,1986,1989,964,868,555,1573,152,701,701,1195,999,951,1495,706,1781,1045,642,927,1654,1553,874,1620,1680,1520,699,271,361,64,1535,756,964,1504,1122,701,1410,445,445,1979,481,75,1938,1536,363,896,1001,1701,1701,1001,1227,896,896,519,581,1906,1756,267,1906,896,267,1906,896,1701,896,341,1177,1943,1454,103,1555,46,1474,103,146,626,1277,136,1611,1231,305,653,629,226,726,823,887,657,557,1874,313,923,275,804,248,189,1963,1784,809,1889,1070,822,1356,1484,1596,1924,1631,791,1821,1821,1929,1711,1100,109,1665,1846,330,330,1562,1499,1200,1395,473,1783,7,473,1783,1395,966,1499,1562,339,1562,1562,1512,1610,678,438,517,1392,1378,1461,1478,1409,1410,822,1717,577,792,577,1894,1070,1078,1088,928,1268,2018,1717,1481,1727,37,458,1758,1120,1602,1573,1785,1101,945,1409,1240,626,294,595,349,1570,1340,1043,559,653,499,586,795,586,1754,1874,906,888,70,197,909,197,1602,888,673,1613,1841,653,1990,844,760,844,1194,1330,338,1353,1866,1034,332,1072,36,1696,822,316,1831,1200,824,1768,1768,475,475,1186,1768,248,1529,1529,1876,956,1797,705,168,944,1131,1326,771,1326,1385,186,1385,1242,155,1528,945,766,1672,1403,1067,2036,363,1906,1906,1906,1906,66,66,1906,1906,1906,66,1906,66,66,66,1906,1906,1906,1906,1906,1906,1906,1906,1906,1459,1459,230,1178,757,831,1039,204,1623,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1623,209,722,722,209,1623,722,1623,722,722,722,209,209,209,209,209,194,194 diff --git a/conf/data/proteingym_v1/struc_seq/2048/KKA2_KLEPN_Melnikov_2014.fasta b/conf/data/proteingym_v1/struc_seq/2048/KKA2_KLEPN_Melnikov_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0a064171c16bcc0ef4c1df8e6b6666a82651bbd7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/KKA2_KLEPN_Melnikov_2014.fasta @@ -0,0 +1,2 @@ +>KKA2_KLEPN_Melnikov_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/LGK_LIPST_Klesmith_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/LGK_LIPST_Klesmith_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b99b8921209187fc451a550d914cc2cf8377ff12 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/LGK_LIPST_Klesmith_2015.fasta @@ -0,0 +1,2 @@ +>LGK_LIPST_Klesmith_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/LYAM1_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/LYAM1_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..52a53a58c2679346794ce273d9ff2c6385d79421 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/LYAM1_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>LYAM1_HUMAN_Elazar_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta b/conf/data/proteingym_v1/struc_seq/2048/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta new file mode 100644 index 0000000000000000000000000000000000000000..14876bb0cb5a61ab430eb120b3aa8e51d4fa1ed5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta @@ -0,0 +1,2 @@ +>MAFG_MOUSE_Tsuboyama_2023_1K1V +1870,1812,1229,1570,1333,878,413,1901,616,1827,1004,49,757,750,2015,1178,141,2015,130,130,757,757,757,289,49,2015,1048,363,1739,439,1906,137,1177,320,1616,377,1746,1697,1697,747,720 diff --git a/conf/data/proteingym_v1/struc_seq/2048/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta b/conf/data/proteingym_v1/struc_seq/2048/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3286b77e6a2d202576b438ff1857ffe0987a36fe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta @@ -0,0 +1,2 @@ +>MBD11_ARATH_Tsuboyama_2023_6ACV +1575,1567,591,1352,1239,1228,508,117,376,829,117,677,135,135,1713,2017,1544,303,567,73,1593,1593,67,567,567,303,1447,1512,459,1599,10,1711,1356,1412,1341,961,233,255,199,255,1010,1049,472,1381,761,1258,1408,1522,1933,1933,1107,1847,1847,2041,1847,1262,2008,234,1020,1504,2012,1984,1923,1211,1989,1757 diff --git a/conf/data/proteingym_v1/struc_seq/2048/MET_HUMAN_Estevam_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/MET_HUMAN_Estevam_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d7a1e4a533f5691d0234ac3b38fc95440ea8f392 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MET_HUMAN_Estevam_2023.fasta @@ -0,0 +1,2 @@ +>MET_HUMAN_Estevam_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/MK01_HUMAN_Brenan_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/MK01_HUMAN_Brenan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..19954803ad9a07001cb6f30e9f6862da4fa3edf7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MK01_HUMAN_Brenan_2016.fasta @@ -0,0 +1,2 @@ +>MK01_HUMAN_Brenan_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/MLAC_ECOLI_MacRae_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/MLAC_ECOLI_MacRae_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c62392a1ed6f24632ee10d27f6ec2b7039a47669 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MLAC_ECOLI_MacRae_2023.fasta @@ -0,0 +1,2 @@ +>MLAC_ECOLI_MacRae_2023 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a/conf/data/proteingym_v1/struc_seq/2048/MSH2_HUMAN_Jia_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/MSH2_HUMAN_Jia_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cfc0cdb03ba2cb3e1056955a7b2df4aa0c017440 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MSH2_HUMAN_Jia_2020.fasta @@ -0,0 +1,2 @@ +>MSH2_HUMAN_Jia_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/MTH3_HAEAE_RockahShmuel_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/MTH3_HAEAE_RockahShmuel_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..57d88be1273fcc37fc8dfb1dfde167a6e91a0390 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MTH3_HAEAE_RockahShmuel_2015.fasta @@ -0,0 +1,2 @@ +>MTH3_HAEAE_RockahShmuel_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/MTHR_HUMAN_Weile_2021.fasta b/conf/data/proteingym_v1/struc_seq/2048/MTHR_HUMAN_Weile_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..67a7bd71778ccf31250dae3d4d5dff8dbd819e24 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MTHR_HUMAN_Weile_2021.fasta @@ -0,0 +1,2 @@ +>MTHR_HUMAN_Weile_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta b/conf/data/proteingym_v1/struc_seq/2048/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a3bdb82333e0c44956fa5e19cffb255d10835378 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta @@ -0,0 +1,2 @@ +>MYO3_YEAST_Tsuboyama_2023_2BTT +1807,1903,1058,1562,484,1156,307,1706,919,919,1863,1653,1007,959,959,1416,1798,902,1493,902,143,1196,1863,1863,1153,1196,1156,1350,1350,2005,654,142,1200,1410,1917,1020,255,906,13,339,1168,1929,1326,138,989,1395,1020,1538,307,142,772,464,13,1200,128,302,10,791,188,1562,1058 diff --git a/conf/data/proteingym_v1/struc_seq/2048/NCAP_I34A1_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/NCAP_I34A1_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f3a2c4bcfa03e5ef001e353121127e0cccf98e60 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NCAP_I34A1_Doud_2015.fasta @@ -0,0 +1,2 @@ +>NCAP_I34A1_Doud_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta b/conf/data/proteingym_v1/struc_seq/2048/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d11bef8d663da7ffa83a711122c1af21f189eb54 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta @@ -0,0 +1,2 @@ +>NKX31_HUMAN_Tsuboyama_2023_2L9R +19,1233,1667,1283,102,717,1616,1301,761,363,898,519,580,1490,1506,1506,881,1207,1825,845,595,1418,1290,1408,355,1408,355,882,580,1064,802,2003,1720,4,1625,882,882,2003,2003,511,1021,1049,1906,439,1147,581,1906,898,580,1906,1906,1906,1906,1906,1906,1640,1640,1640,1640,1640,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/NPC1_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/2048/NPC1_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0322590363460ea0e36acba577dc86f4ec23ab02 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NPC1_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/NPC1_HUMAN_Erwood_2022_RPE1.fasta b/conf/data/proteingym_v1/struc_seq/2048/NPC1_HUMAN_Erwood_2022_RPE1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..142654e11b84f3801146872e4ff5071e83ed2cec --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NPC1_HUMAN_Erwood_2022_RPE1.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_RPE1 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/NRAM_I33A0_Jiang_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/NRAM_I33A0_Jiang_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a962b7243da1455cb6e88e6166ca2317034fc4af --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NRAM_I33A0_Jiang_2016.fasta @@ -0,0 +1,2 @@ +>NRAM_I33A0_Jiang_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/NUD15_HUMAN_Suiter_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/NUD15_HUMAN_Suiter_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3df759c79e4f62d8315574e03e189cd7078df220 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NUD15_HUMAN_Suiter_2020.fasta @@ -0,0 +1,2 @@ +>NUD15_HUMAN_Suiter_2020 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0000000000000000000000000000000000000000..7cde8300db3d978aed57ab5b41fb0cf6db21c14a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta @@ -0,0 +1,2 @@ +>NUSA_ECOLI_Tsuboyama_2023_1WCL +612,4,1663,1370,4,1418,1064,913,2001,1656,1346,377,2001,828,1887,1656,2003,355,355,1656,1404,2027,2001,4,1656,1418,866,4,681,4,593,1022,1223,1419,1193,349,12,1933,1604,1987,1943,1466,745,16,1539,445,445,130,62,1049,963,1827,1604,171,61,27,1140,1676,2004,1064,1663,1495,1829,320,1640,134,1640,1640,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta b/conf/data/proteingym_v1/struc_seq/2048/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fef69cd897f3327edbf7f7f8ad70070ca303c43a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta @@ -0,0 +1,2 @@ +>NUSG_MYCTU_Tsuboyama_2023_2MI6 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a/conf/data/proteingym_v1/struc_seq/2048/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta b/conf/data/proteingym_v1/struc_seq/2048/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9024491a9d207effc8a60da2a97f5c2a8b4a7a88 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta @@ -0,0 +1,2 @@ +>ODP2_GEOSE_Tsuboyama_2023_1W4G +740,740,1285,1659,1810,1287,827,963,761,94,1555,607,191,2003,1304,2000,2003,1226,1470,1134,479,1800,655,479,1198,1727,1924,52,842,1285,1749,916,1909,1909,94,1,828,4,1604,511,1418,2003,1640,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/OPSD_HUMAN_Wan_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/OPSD_HUMAN_Wan_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0f4571254a9323195089b0d6e14f63b574ae8c6e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/OPSD_HUMAN_Wan_2019.fasta @@ -0,0 +1,2 @@ +>OPSD_HUMAN_Wan_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/OTC_HUMAN_Lo_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/OTC_HUMAN_Lo_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..521e7e5fd94de76ed1f8d07607eee39b229479fe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/OTC_HUMAN_Lo_2023.fasta @@ -0,0 +1,2 @@ +>OTC_HUMAN_Lo_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta b/conf/data/proteingym_v1/struc_seq/2048/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e45c7a2f5532f2f4bc5272962789021f933595c8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta @@ -0,0 +1,2 @@ +>OTU7A_HUMAN_Tsuboyama_2023_2L2D +740,1870,1595,413,129,434,921,921,1656,1693,1008,87,1656,169,1075,1,1656,1656,2003,355,355,72,72,1227,1187,72,72,1568,1568,1008,2025,1187,72,1720,1811,377,377,1697,1111,1500,134,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/OXDA_RHOTO_Vanella_2023_activity.fasta b/conf/data/proteingym_v1/struc_seq/2048/OXDA_RHOTO_Vanella_2023_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4bd758b155df2bde88338053f27f8ed503d838fc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/OXDA_RHOTO_Vanella_2023_activity.fasta @@ -0,0 +1,2 @@ +>OXDA_RHOTO_Vanella_2023_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/OXDA_RHOTO_Vanella_2023_expression.fasta b/conf/data/proteingym_v1/struc_seq/2048/OXDA_RHOTO_Vanella_2023_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ee6a1b2132e352b439f30c508a0d5c39a402e4eb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/OXDA_RHOTO_Vanella_2023_expression.fasta @@ -0,0 +1,2 @@ +>OXDA_RHOTO_Vanella_2023_expression 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4951938c5988ffb06c100a961352f97a499d8323 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_Null_Etoposide 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e477c5086eff4ef87f91dc59ca8ec2f693cf65d5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_Null_Nutlin 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c01e8f469e4c6ac6edaef1e9dc71469ffc0280d5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_WT_Nutlin 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Kotler_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Kotler_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..37b28f83762a4e9c1869f68c97e135bcb9e14d5b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/P53_HUMAN_Kotler_2018.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Kotler_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/P84126_THETH_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/P84126_THETH_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1f409771e356309e46e7e9a630e3f24a03201c5e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/P84126_THETH_Chan_2017.fasta @@ -0,0 +1,2 @@ +>P84126_THETH_Chan_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PABP_YEAST_Melamed_2013.fasta b/conf/data/proteingym_v1/struc_seq/2048/PABP_YEAST_Melamed_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..26eea9e6f9ef0b6c883cf76dc8063d9e232ef65b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PABP_YEAST_Melamed_2013.fasta @@ -0,0 +1,2 @@ +>PABP_YEAST_Melamed_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PAI1_HUMAN_Huttinger_2021.fasta b/conf/data/proteingym_v1/struc_seq/2048/PAI1_HUMAN_Huttinger_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..624bc5daabfa61f3d1bace44cf4c38bb40d2531f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PAI1_HUMAN_Huttinger_2021.fasta @@ -0,0 +1,2 @@ +>PAI1_HUMAN_Huttinger_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PA_I34A1_Wu_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/PA_I34A1_Wu_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..650d63c27fb48fe498b7a6f903b5cd759c3a7ccf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PA_I34A1_Wu_2015.fasta @@ -0,0 +1,2 @@ +>PA_I34A1_Wu_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PHOT_CHLRE_Chen_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/PHOT_CHLRE_Chen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cf1fbdccfc03a89e74aaa26a7f60f6ba92142ef2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PHOT_CHLRE_Chen_2023.fasta @@ -0,0 +1,2 @@ +>PHOT_CHLRE_Chen_2023 +740,740,1233,1150,168,381,928,1858,1530,791,1610,1610,864,1242,1251,18,1356,888,138,1738,1610,199,453,255,172,1163,1031,1745,763,1137,851,12,1657,517,1847,254,1797,1538,1675,1872,1872,1363,334,847,729,474,906,714,1211,193,1118,443,869,784,298,363,1498,298,682,1397,2010,1980,1397,1090,924,524,1043,1970,707,588,1239,199,694,522,1299,1091,1875,1412,826,316,96,872,1713,135,232,1630,1630,1124,1947,1070,1556,1395,1395,1783,598,1129,1831,108,917,1200,379,1088,105,105,1884,1858,1447,1447,108,1054,1167,1827,1939,721,717,1452,203,392 diff --git a/conf/data/proteingym_v1/struc_seq/2048/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta b/conf/data/proteingym_v1/struc_seq/2048/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta new file mode 100644 index 0000000000000000000000000000000000000000..60e4e2382d614cb4bf30d60ece9f2ae634785fca --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta @@ -0,0 +1,2 @@ +>PIN1_HUMAN_Tsuboyama_2023_1I6C +1881,492,1597,1597,553,822,1447,1168,1713,545,1783,598,1910,7,1783,1053,1298,1932,694,522,1395,1688,1872,1797,1797,1341,1447,1228,142,268,739,268,1437,1437,1667,1989,1989,1046,1133 diff --git a/conf/data/proteingym_v1/struc_seq/2048/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta b/conf/data/proteingym_v1/struc_seq/2048/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3fb38bc8ece88879f5dc50917061e0edb0f8b83b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta @@ -0,0 +1,2 @@ +>PITX2_HUMAN_Tsuboyama_2023_2L7M +891,1667,689,1162,717,1470,1193,1370,1616,267,1265,580,603,1674,1506,881,640,388,845,349,240,198,1418,355,681,4,882,1829,2001,1187,395,802,1193,1887,2001,2003,2003,2003,1770,1064,355,1906,898,1147,898,1906,1111,523,1640,1640,523,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta b/conf/data/proteingym_v1/struc_seq/2048/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7345a75fefda86448c661c0dfc10ee7de3c3fe80 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta @@ -0,0 +1,2 @@ +>PKN1_HUMAN_Tsuboyama_2023_1URF 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/POLG_DEN26_Suphatrakul_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/POLG_DEN26_Suphatrakul_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1d9db0794ca55253fc134d723731c5249d5b64e0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/POLG_DEN26_Suphatrakul_2023.fasta @@ -0,0 +1,2 @@ +>POLG_DEN26_Suphatrakul_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/POLG_HCVJF_Qi_2014.fasta b/conf/data/proteingym_v1/struc_seq/2048/POLG_HCVJF_Qi_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..75156537cb17343455144c335a4e2b584ea6a01b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/POLG_HCVJF_Qi_2014.fasta @@ -0,0 +1,2 @@ +>POLG_HCVJF_Qi_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/POLG_PESV_Tsuboyama_2023_2MXD.fasta b/conf/data/proteingym_v1/struc_seq/2048/POLG_PESV_Tsuboyama_2023_2MXD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3c870936c14046afc47125cf4a4a85b7381ef064 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/POLG_PESV_Tsuboyama_2023_2MXD.fasta @@ -0,0 +1,2 @@ +>POLG_PESV_Tsuboyama_2023_2MXD +234,750,757,1697,230,1147,341,1459,267,265,1111,682,953,812,1444,1638,1770,1552,1390,1176,1246,717,355,49,1827,341,267,1383,500,802,1674,720,191,169,469,836,952,1152,286,481,952,191,191,265,500,898,1640,134,523,1640,1640,1640,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/PPARG_HUMAN_Majithia_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/PPARG_HUMAN_Majithia_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6dae1f19df02f2ee4305ff8d60e8ddd771b03999 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PPARG_HUMAN_Majithia_2016.fasta @@ -0,0 +1,2 @@ +>PPARG_HUMAN_Majithia_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PPM1D_HUMAN_Miller_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/PPM1D_HUMAN_Miller_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..874b100ac8b7b56c1756e77ebfd66d7c84a0cbf8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PPM1D_HUMAN_Miller_2022.fasta @@ -0,0 +1,2 @@ +>PPM1D_HUMAN_Miller_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta b/conf/data/proteingym_v1/struc_seq/2048/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..737e59bbef2d80a12c3d8618e6146191abeab1d8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta @@ -0,0 +1,2 @@ +>PR40A_HUMAN_Tsuboyama_2023_1UZC +1176,349,1333,349,1982,1943,675,2015,1004,675,1097,129,320,995,1756,385,75,304,191,1258,43,659,323,518,1010,655,1987,745,355,1,130,1943,43,415,659,75,75,415,1311,696,349,2025,1333,349,1097,1620,1178,2015,1178,921,2025,265,1111,137,1265,896,1111,320,631,1111,1111,631,1111 diff --git a/conf/data/proteingym_v1/struc_seq/2048/PRKN_HUMAN_Clausen_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/PRKN_HUMAN_Clausen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d0c9fc9f34ecf56c88f439bf07edb5a87ce3b996 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PRKN_HUMAN_Clausen_2023.fasta @@ -0,0 +1,2 @@ +>PRKN_HUMAN_Clausen_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta b/conf/data/proteingym_v1/struc_seq/2048/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta new file mode 100644 index 0000000000000000000000000000000000000000..20018e91d2a5c01ac653bf5caf21d18432819c46 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta @@ -0,0 +1,2 @@ +>PSAE_SYNP2_Tsuboyama_2023_1PSE +1633,1896,386,966,343,1148,654,484,1350,394,1410,331,964,1986,18,430,1484,327,1298,1973,694,1350,654,654,1148,343,1863,1007,1413,959,1989,1082,186,917,128,1863,1853,484,694,815,1945,1863,186,1007,1007,1007,753,1413,77,77,1396,753,753,544,544,1839,1148,1350,522,1688,70,128,1831,1855,791,10,1430,1665 diff --git a/conf/data/proteingym_v1/struc_seq/2048/PTEN_HUMAN_Matreyek_2021.fasta b/conf/data/proteingym_v1/struc_seq/2048/PTEN_HUMAN_Matreyek_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a86c3292dc30ecbf66bb3db5ae0e2201e7ebd123 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PTEN_HUMAN_Matreyek_2021.fasta @@ -0,0 +1,2 @@ +>PTEN_HUMAN_Matreyek_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/PTEN_HUMAN_Mighell_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/PTEN_HUMAN_Mighell_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..445324523ae33e3e8c056dd53c321dae74388800 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/PTEN_HUMAN_Mighell_2018.fasta @@ -0,0 +1,2 @@ +>PTEN_HUMAN_Mighell_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q2N0S5_9HIV1_Haddox_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q2N0S5_9HIV1_Haddox_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cc960c644fca56133959afa92a02e42c7beb94ec --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q2N0S5_9HIV1_Haddox_2018.fasta @@ -0,0 +1,2 @@ +>Q2N0S5_9HIV1_Haddox_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..00d3477bf299eca9b2cd7ad119a8ca633e84cb3a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta @@ -0,0 +1,2 @@ +>Q53Z42_HUMAN_McShan_2019_binding-TAPBPR 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q53Z42_HUMAN_McShan_2019_expression.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q53Z42_HUMAN_McShan_2019_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5beb1e1284cd0085c75d814a7cc67c6146cb6d66 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q53Z42_HUMAN_McShan_2019_expression.fasta @@ -0,0 +1,2 @@ +>Q53Z42_HUMAN_McShan_2019_expression 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q59976_STRSQ_Romero_2015.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q59976_STRSQ_Romero_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..453c07824274d9c9513cbcf4732cfc313db08645 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q59976_STRSQ_Romero_2015.fasta @@ -0,0 +1,2 @@ +>Q59976_STRSQ_Romero_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q6WV13_9MAXI_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q6WV13_9MAXI_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..82dab38b4281cfaf386f72c0969534cc04f5dd06 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q6WV13_9MAXI_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>Q6WV13_9MAXI_Somermeyer_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q837P4_ENTFA_Meier_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q837P4_ENTFA_Meier_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..67124d633ad0845f0c16bd47c1a4f90ce553adcd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q837P4_ENTFA_Meier_2023.fasta @@ -0,0 +1,2 @@ +>Q837P4_ENTFA_Meier_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q837P5_ENTFA_Meier_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q837P5_ENTFA_Meier_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f146a84a5b7eb395f18d32ba46d771c2a7f16de1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q837P5_ENTFA_Meier_2023.fasta @@ -0,0 +1,2 @@ +>Q837P5_ENTFA_Meier_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/Q8WTC7_9CNID_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/Q8WTC7_9CNID_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..707e1de261d4e4bec891bc4272eed54659e5394b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/Q8WTC7_9CNID_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>Q8WTC7_9CNID_Somermeyer_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/R1AB_SARS2_Flynn_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/R1AB_SARS2_Flynn_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dbc7e61fb6919516d07d48642c7f9281288c8b79 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/R1AB_SARS2_Flynn_2022.fasta @@ -0,0 +1,2 @@ +>R1AB_SARS2_Flynn_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta b/conf/data/proteingym_v1/struc_seq/2048/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dca45e56999314238290239ff2029e2121db4da6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta @@ -0,0 +1,2 @@ +>RAD_ANTMA_Tsuboyama_2023_2CJJ +468,511,40,40,449,1780,876,1370,277,1495,533,1495,1495,2011,1944,1527,1943,1002,950,964,1238,1238,1781,675,1064,1938,706,833,1518,861,436,593,1367,445,1628,1408,2003,2003,1408,377,1427,898,523,1032,1906,1906,1906,1906,1640,1640,1640,1640,368,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RAF1_HUMAN_Zinkus-Boltz_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/RAF1_HUMAN_Zinkus-Boltz_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8c03dc97ffec813f20803791e1cbf8deb71f9666 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RAF1_HUMAN_Zinkus-Boltz_2019.fasta @@ -0,0 +1,2 @@ +>RAF1_HUMAN_Zinkus-Boltz_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/RASH_HUMAN_Bandaru_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/RASH_HUMAN_Bandaru_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7389088f34d446d2fbe71c0f10e6e4171c0a55c9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RASH_HUMAN_Bandaru_2017.fasta @@ -0,0 +1,2 @@ +>RASH_HUMAN_Bandaru_2017 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b/conf/data/proteingym_v1/struc_seq/2048/RASK_HUMAN_Weng_2022_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c5c5772d2ce28c4c7df562232d697aed4fe3b56d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RASK_HUMAN_Weng_2022_abundance.fasta @@ -0,0 +1,2 @@ +>RASK_HUMAN_Weng_2022_abundance 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b/conf/data/proteingym_v1/struc_seq/2048/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta new file mode 100644 index 0000000000000000000000000000000000000000..589bf026263310fbf4342bad6a93b4a78d7f3921 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta @@ -0,0 +1,2 @@ +>RASK_HUMAN_Weng_2022_binding-DARPin_K55 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b/conf/data/proteingym_v1/struc_seq/2048/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta new file mode 100644 index 0000000000000000000000000000000000000000..97a201ec559a16ed02c2a32ab7b2f34e560bbda2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta @@ -0,0 +1,2 @@ +>RBP1_HUMAN_Tsuboyama_2023_2KWH +40,242,242,1697,1697,320,267,363,439,1756,1032,385,519,439,1032,439,439,1032,1032,439,439,603,1454,1454,230,645,1565,1867,645,1178,1222,230,124,124,363,14,1756,267,896,519,439,898,439,1756,896,898,320,320,1640,1639,1746,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta b/conf/data/proteingym_v1/struc_seq/2048/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta new file mode 100644 index 0000000000000000000000000000000000000000..449d2b5c66e4f7bec24a01b24b6fc3956bb78201 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta @@ -0,0 +1,2 @@ +>RCD1_ARATH_Tsuboyama_2023_5OAO 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a/conf/data/proteingym_v1/struc_seq/2048/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta b/conf/data/proteingym_v1/struc_seq/2048/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..72fc3c3f2ae3daf81e333dacde8d2c175f3331c5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta @@ -0,0 +1,2 @@ +>RD23A_HUMAN_Tsuboyama_2023_1IFY +195,1487,1725,523,523,1725,72,355,320,1187,355,1506,1869,1869,1147,1147,1111,355,1193,1187,72,72,2022,2004,960,703,1064,1008,72,1187,72,1281,412,2022,1282,1887,2022,703,174,1325,2030,4,1332,1076 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RDRP_I33A0_Li_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/RDRP_I33A0_Li_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2a22b4001bfd2e55a7eaceaf72375c273baf3bf7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RDRP_I33A0_Li_2023.fasta @@ -0,0 +1,2 @@ +>RDRP_I33A0_Li_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/REV_HV1H2_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/REV_HV1H2_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f78453bff436ad8e630fd58e973ac77bd2b8575e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/REV_HV1H2_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>REV_HV1H2_Fernandes_2016 +891,19,672,1898,62,757,1178,1258,1258,1906,1032,267,1906,1906,1032,1032,1906,1104,267,1032,1906,1111,320,558,56,1418,1162,1283,697,1076,1446,1596,1847,831,62,963,717,1290,363,1906,310,1616,1906,650,355,581,1906,898,1111,1906,1906,267,267,1906,898,267,898,682,580,1813,881,547,75,1456,361,758,777,993,993,1986,1986,1989,1989,77,1989,1039,1039,1039,993,993,993,1836,993,1215,1215,1369,1369,360,360,360,360,918,1787,1787,1787,1787,1787,1787,1787,1787,1623,1623,1787,722,1623,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787,1787 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta b/conf/data/proteingym_v1/struc_seq/2048/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d763a703bce53baf0f1de2ec37d141382609d9fe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta @@ -0,0 +1,2 @@ +>RFAH_ECOLI_Tsuboyama_2023_2LCL +1230,1633,792,390,576,343,1085,1853,484,1350,1610,1610,362,1082,1120,0,362,117,1326,1156,484,654,484,1148,772,1493,1493,1854,864,1395,1544,1447,694,135,135,339,1499,1561,1186,1186,1186,1228,1352,339,135,2017,1512,1544,1544,792,1653,1574,109,1430,342 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta b/conf/data/proteingym_v1/struc_seq/2048/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e8b6386b88b6569013ef1507bb72a01ea67c6389 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta @@ -0,0 +1,2 @@ +>RL20_AQUAE_Tsuboyama_2023_1GYZ +320,377,1725,1187,1064,32,4,1064,1064,2043,954,953,511,4,1397,1256,147,277,1064,240,1553,72,1073,2022,1073,72,515,690,364,1167,757,1372,1372,1812,703,1725,1346,934,1024,1266,1460,1460,1460,639,1638,1541,1638,66,1676,1786,134,1187,72,625,625,1187,1073,885,2030 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RL40A_YEAST_Mavor_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/RL40A_YEAST_Mavor_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..19a804d1540cdf6a88fe1142fd1d62ab41ff3aec --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RL40A_YEAST_Mavor_2016.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Mavor_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/RPC1_BP434_Tsuboyama_2023_1R69.fasta b/conf/data/proteingym_v1/struc_seq/2048/RPC1_BP434_Tsuboyama_2023_1R69.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1a61714518cc3345c0c876dd0ae4abfee5f25edd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RPC1_BP434_Tsuboyama_2023_1R69.fasta @@ -0,0 +1,2 @@ +>RPC1_BP434_Tsuboyama_2023_1R69 +690,690,1266,720,1487,182,425,1032,681,43,1304,425,703,954,2003,882,882,882,1707,593,1123,593,1064,1064,1951,593,882,882,882,627,24,1266,174,952,513,1266,635,286,286,1354,1935,853,1535,828,1781,2001,72,1951,2001,2001,2022,960,1656,1404,882,1887,472,1418,1123,1229,1372 diff --git a/conf/data/proteingym_v1/struc_seq/2048/RPC1_LAMBD_Li_2019_high-expression.fasta b/conf/data/proteingym_v1/struc_seq/2048/RPC1_LAMBD_Li_2019_high-expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d661b88a9a92c63f52d78e3acf3dfb687f5d0c04 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RPC1_LAMBD_Li_2019_high-expression.fasta @@ -0,0 +1,2 @@ +>RPC1_LAMBD_Li_2019_high-expression 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/RPC1_LAMBD_Li_2019_low-expression.fasta b/conf/data/proteingym_v1/struc_seq/2048/RPC1_LAMBD_Li_2019_low-expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..37d2688bd29ff424dc74d41494211720ded34b01 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RPC1_LAMBD_Li_2019_low-expression.fasta @@ -0,0 +1,2 @@ +>RPC1_LAMBD_Li_2019_low-expression 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/RS15_GEOSE_Tsuboyama_2023_1A32.fasta b/conf/data/proteingym_v1/struc_seq/2048/RS15_GEOSE_Tsuboyama_2023_1A32.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3f6aa8b3f92407809dc9617b3fb325b5983f1e7e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/RS15_GEOSE_Tsuboyama_2023_1A32.fasta @@ -0,0 +1,2 @@ +>RS15_GEOSE_Tsuboyama_2023_1A32 +1487,1741,642,523,320,995,1725,385,1442,320,1032,439,439,1885,1885,112,112,603,1638,1456,547,361,1456,361,547,547,547,1650,1638,1638,603,896,439,898,898,1756,1442,1906,519,1756,896,896,1739,278,1811,513,1024,1811,169,169,1744,1811,2000,1541,1541,1506,1111,320,1746,1697,1498,876,1547 diff --git a/conf/data/proteingym_v1/struc_seq/2048/S22A1_HUMAN_Yee_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/2048/S22A1_HUMAN_Yee_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9cf640d2c00c74bd2c7b1be07d3deb28bd6de6f2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/S22A1_HUMAN_Yee_2023_abundance.fasta @@ -0,0 +1,2 @@ +>S22A1_HUMAN_Yee_2023_abundance 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/S22A1_HUMAN_Yee_2023_activity.fasta b/conf/data/proteingym_v1/struc_seq/2048/S22A1_HUMAN_Yee_2023_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..db9783090ed9df48fd5d8bcea1a5a28ab0d1ca3e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/S22A1_HUMAN_Yee_2023_activity.fasta @@ -0,0 +1,2 @@ +>S22A1_HUMAN_Yee_2023_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta b/conf/data/proteingym_v1/struc_seq/2048/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f359a8cad495453021987c9c31e1329336196c7e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta @@ -0,0 +1,2 @@ +>SAV1_MOUSE_Tsuboyama_2023_2YSB +740,740,740,1667,1764,1214,594,989,1797,1356,1599,1483,142,545,1783,1783,1783,1783,1053,1298,142,1512,1610,822,1356,1872,1797,1797,1341,1599,2017,303,1984,971,1310,374,1039,1369,1286,1369,1369,1369,67 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SBI_STAAM_Tsuboyama_2023_2JVG.fasta b/conf/data/proteingym_v1/struc_seq/2048/SBI_STAAM_Tsuboyama_2023_2JVG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8987caded0537b35662e19200ade63fe1490e588 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SBI_STAAM_Tsuboyama_2023_2JVG.fasta @@ -0,0 +1,2 @@ +>SBI_STAAM_Tsuboyama_2023_2JVG +195,651,651,1370,1370,632,1140,1439,1177,167,1265,1885,1442,1001,649,846,720,87,846,1222,1,1222,1222,1222,953,1188,265,1720,167,304,341,167,642,323,949,87,843,133,447,1604,1746,1506,580,87,1676,898,896,604,896,1640,320,377,1640,1111,1506,1498 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SC6A4_HUMAN_Young_2021.fasta b/conf/data/proteingym_v1/struc_seq/2048/SC6A4_HUMAN_Young_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6aec95b3d89a566fa9111880315e63685a6cebbe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SC6A4_HUMAN_Young_2021.fasta @@ -0,0 +1,2 @@ +>SC6A4_HUMAN_Young_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta b/conf/data/proteingym_v1/struc_seq/2048/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..81c2dfea6c0e37dbfd7109452b82b7c577ef79ea --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta @@ -0,0 +1,2 @@ +>SCIN_STAAR_Tsuboyama_2023_2QFF +242,1746,523,1221,642,642,1032,862,278,167,605,1741,167,682,767,1691,1361,682,1691,649,1674,1693,43,999,364,1620,130,1933,1948,921,513,265,649,1001,533,862,604,1553,519,1495,1001,1442,1829,1786,642,75,608,625,706,625,1639,1829,1553,1097,61,604,205,896,802,995,519,581,1001,1553,1640,1111,1008,320,1640,1246 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SCN5A_HUMAN_Glazer_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/SCN5A_HUMAN_Glazer_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..20cc3961406f5987fa9218d8aff62bed003a6732 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SCN5A_HUMAN_Glazer_2019.fasta @@ -0,0 +1,2 @@ +>SCN5A_HUMAN_Glazer_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SDA_BACSU_Tsuboyama_2023_1PV0.fasta b/conf/data/proteingym_v1/struc_seq/2048/SDA_BACSU_Tsuboyama_2023_1PV0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..07cf86904a554c215cb872dcf27f0eb590d0ccfb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SDA_BACSU_Tsuboyama_2023_1PV0.fasta @@ -0,0 +1,2 @@ +>SDA_BACSU_Tsuboyama_2023_1PV0 +19,1937,1667,1290,62,1301,49,1827,355,1811,1459,862,1720,500,1038,191,1506,2000,1036,546,1304,546,1222,289,2003,1038,265,898,439,802,1050,934,1541,1050,1050,934,1444,1460,1460,1094,1094,1460,1731,1094 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SERC_HUMAN_Xie_2023.fasta b/conf/data/proteingym_v1/struc_seq/2048/SERC_HUMAN_Xie_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..94f35924904143955cee4ad38b7efe4c8b0e2586 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SERC_HUMAN_Xie_2023.fasta @@ -0,0 +1,2 @@ +>SERC_HUMAN_Xie_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SHOC2_HUMAN_Kwon_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/SHOC2_HUMAN_Kwon_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c045cae85fbe857e8e9ef25d06422320209a7b1d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SHOC2_HUMAN_Kwon_2022.fasta @@ -0,0 +1,2 @@ +>SHOC2_HUMAN_Kwon_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta b/conf/data/proteingym_v1/struc_seq/2048/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d4acd4c13b517ed32af1479b997886c7cbe44ade --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta @@ -0,0 +1,2 @@ +>SOX30_HUMAN_Tsuboyama_2023_7JJK +1233,1997,1628,461,1663,2004,2011,1862,2001,533,1541,682,580,580,967,967,500,846,121,1444,217,64,64,1,64,1075,49,49,1506,355,363,862,862,896,1459,134,377,1049,49,1178,757,1827,1222,1222,1253,355,896,61,61,1271,1271,1420,461,1640,1628,392,461 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPA_STAAU_Tsuboyama_2023_1LP1.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPA_STAAU_Tsuboyama_2023_1LP1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..95fc4adf33dc4081f4b0a57ecc5f3e88522522ac --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPA_STAAU_Tsuboyama_2023_1LP1.fasta @@ -0,0 +1,2 @@ +>SPA_STAAU_Tsuboyama_2023_1LP1 +1809,1704,413,979,129,129,129,533,1001,995,265,304,1097,413,750,878,789,497,1539,1539,62,963,1253,921,355,1104,946,1001,1813,1813,1691,1541,547,1541,1024,346,346,1691,1227,1227,1777,995,1701,896,1553,377,1459,1271,461,1587,745,102,102,1526,1898 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPG1_STRSG_Olson_2014.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPG1_STRSG_Olson_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0915ecaa895418e81cc850ec87b70e37003108b0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPG1_STRSG_Olson_2014.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Olson_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPG1_STRSG_Wu_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPG1_STRSG_Wu_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e13c4cbf5ec30f5052880eca935864d0925cb9eb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPG1_STRSG_Wu_2016.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Wu_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3997f4080207b80c83dee164e4807aaca5bf9bbd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta @@ -0,0 +1,2 @@ +>SPG2_STRSG_Tsuboyama_2023_5UBS +1233,1376,1376,455,1703,47,1703,894,1716,224,1923,462,808,1228,47,393,821,998,852,317,1648,736,992,757,2021,1883,1247,650,1498,328,1397,2000,2000,1090,1036,2000,1036,1036,1806,744,1406,1716,393,1703,1743,848,1662,1910,563,563,465,1550,47,1703,1716,258 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPIKE_SARS2_Starr_2020_binding.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPIKE_SARS2_Starr_2020_binding.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d7ca6a74f2ce3622e032abecbd4810be41345d66 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPIKE_SARS2_Starr_2020_binding.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_binding 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPIKE_SARS2_Starr_2020_expression.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPIKE_SARS2_Starr_2020_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a982c2f935c00df0a2ae8e1e5413c973a8577f33 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPIKE_SARS2_Starr_2020_expression.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_expression 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta b/conf/data/proteingym_v1/struc_seq/2048/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e82ae169b0bf650c82d4ac28b6d120f62305b51c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta @@ -0,0 +1,2 @@ +>SPTN1_CHICK_Tsuboyama_2023_1TUD +1835,166,1990,1599,1070,1070,1268,1395,464,1574,233,1239,1168,1228,268,931,931,931,601,1561,135,1350,464,1706,1706,919,1863,1863,966,1365,1860,1531,1531,117,1990,810,576,1863,1863,919,1863,1863,1156,1415,1826,459,1874,772,1211,1860,1007,732,890,51,199,1424,1124,638,207,1932 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta b/conf/data/proteingym_v1/struc_seq/2048/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ce8e34a04804e0c6503d9a24674c3209727ba8d4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta @@ -0,0 +1,2 @@ +>SQSTM_MOUSE_Tsuboyama_2023_2RRU +1372,1656,1487,1487,320,1656,1869,1638,1147,1304,1869,1869,1869,1869,64,64,335,270,1222,1222,952,951,967,1568,412,1187,1568,1811,1634,1739,720,1361,580,846,1147,355,1697,1111,1639,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SR43C_ARATH_Tsuboyama_2023_2N88.fasta b/conf/data/proteingym_v1/struc_seq/2048/SR43C_ARATH_Tsuboyama_2023_2N88.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bb0e0315631435512275e66229df200eda65e732 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SR43C_ARATH_Tsuboyama_2023_2N88.fasta @@ -0,0 +1,2 @@ +>SR43C_ARATH_Tsuboyama_2023_2N88 +498,1653,1653,1653,1688,1299,1299,33,1512,694,588,1447,567,1020,1020,1020,1791,199,1447,1512,1499,1148,824,966,577,1860,74,1396,1007,824,339,694,10,1512,199,1598,1984,1830,1067,289,1067,2023,2023,1498,511,1381,817,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta b/conf/data/proteingym_v1/struc_seq/2048/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5fef14c07f29c45281e5880dfc06fab63e036c51 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta @@ -0,0 +1,2 @@ +>SRBS1_HUMAN_Tsuboyama_2023_2O2W +1809,958,944,468,1261,441,379,790,1415,1350,175,175,1863,1863,966,576,544,1396,1798,1798,99,1493,886,815,343,1863,1863,175,1863,1156,484,1415,484,694,1424,1493,1854,1007,18,474,1854,1854,1168,2005,1512,1561,1839,1413,1413,737,1561,1493,60,1556,1493,1854,1447,530,1321,1447,791,1447,1665,1156,1156,379,1261 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Ahler_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Ahler_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7cc4fe91ccf6102509e4955f3bebe5f138cb5cce --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Ahler_2019.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Ahler_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta b/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..06531777893f530fa48d02b3388d6ea92833ab5b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Nguyen_2022.fasta b/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Nguyen_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0aa62e8d32ff740560ced9b4a62192dfcdd808cf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SRC_HUMAN_Nguyen_2022.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Nguyen_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/SUMO1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/SUMO1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bf8206db526ccaf276b09652eaaaec215263b8a7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SUMO1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>SUMO1_HUMAN_Weile_2017 +19,722,722,722,918,67,67,67,458,1989,710,1046,67,204,710,710,1989,1437,1437,1092,1269,818,1119,1072,1297,276,1698,1357,151,1511,151,1243,894,894,1703,1512,1926,872,70,776,1412,798,1009,1009,1919,882,30,643,2003,1811,1443,1304,2003,1397,954,546,284,395,1919,517,18,944,1723,1203,1690,1686,1305,1259,1259,822,944,438,1919,1446,510,860,435,1681,851,22,262,1705,85,548,1072,57,1119,1072,1698,849,1357,1122,1122,1007,964,1593,1593,67,67,67,1133 diff --git a/conf/data/proteingym_v1/struc_seq/2048/SYUA_HUMAN_Newberry_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/SYUA_HUMAN_Newberry_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3bffd04baa7a1d6604e9c4b81fb9b4449dfeca79 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/SYUA_HUMAN_Newberry_2020.fasta @@ -0,0 +1,2 @@ +>SYUA_HUMAN_Newberry_2020 +195,195,1221,1221,1221,1221,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,66,682,682,639,1900,1900,364,364,467,1986,1986,777,1461,1933,1222,639,682,682,682,1906,1906,1906,1906,66,1906,1906,66,66,66,66,66,66,66,66,66,66,66,66,66,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,1906,682,881,881,547,447,361,1867,301,1989,710,1989,1046,1046,710,710,1046,710,1046,1046,722,722,722,209,722,1046,486,486,1046,710,1989,77,1215,1986,1986,1989,1989,1989,77,1989,1057,1057,1989,1057,1986,1986,1215,1989,710,1989,1133,1133,1199,1199 diff --git a/conf/data/proteingym_v1/struc_seq/2048/TADBP_HUMAN_Bolognesi_2019.fasta b/conf/data/proteingym_v1/struc_seq/2048/TADBP_HUMAN_Bolognesi_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0950305af117ac1a8da97f9bf6d2acb8fee7088b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TADBP_HUMAN_Bolognesi_2019.fasta @@ -0,0 +1,2 @@ +>TADBP_HUMAN_Bolognesi_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/TAT_HV1BR_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/2048/TAT_HV1BR_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8027102fc529f8774da3d9ad89d0db65093ddeaa --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TAT_HV1BR_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>TAT_HV1BR_Fernandes_2016 +1667,1233,740,1413,1413,959,959,1584,1039,1584,672,672,959,1820,1413,498,498,1667,1597,1923,1923,1899,1694,697,789,853,1987,853,37,518,518,853,1283,1968,1888,1354,1354,635,1736,318,1354,635,1736,1736,1736,1624,1596,1046,1989,710,67,77,710,710,204,204,204,204,204,204,931,204,918,1593,1593,1593,993,993,1215,1215,1215,1215,1215,1215,1215,1215,1986,1986,1215,67,67,918,1623,722,209,194 diff --git a/conf/data/proteingym_v1/struc_seq/2048/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta b/conf/data/proteingym_v1/struc_seq/2048/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta new file mode 100644 index 0000000000000000000000000000000000000000..86508c70cc886666ad3270eaa4eb2c334cf8baf6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta @@ -0,0 +1,2 @@ +>TCRG1_MOUSE_Tsuboyama_2023_1E0L +1809,1570,1870,306,306,1629,1626,1769,394,1512,10,545,545,1783,7,473,1053,1298,694,1512,522,1529,1688,1872,1797,1797,545,1447,1239,677,714,474,797,655,306,1871,1426 diff --git a/conf/data/proteingym_v1/struc_seq/2048/THO1_YEAST_Tsuboyama_2023_2WQG.fasta b/conf/data/proteingym_v1/struc_seq/2048/THO1_YEAST_Tsuboyama_2023_2WQG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fcf878137ccd7fec4a07cafa65d69bc72a2ba9a2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/THO1_YEAST_Tsuboyama_2023_2WQG.fasta @@ -0,0 +1,2 @@ +>THO1_YEAST_Tsuboyama_2023_2WQG 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b/conf/data/proteingym_v1/struc_seq/2048/TPK1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..eee0584279cc8d07b5d9b2666fdf59fb8dd121c3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TPK1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>TPK1_HUMAN_Weile_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/TPMT_HUMAN_Matreyek_2018.fasta b/conf/data/proteingym_v1/struc_seq/2048/TPMT_HUMAN_Matreyek_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5e6e49abf1fd15bd0aa04a6cda26d4c35fff58e3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TPMT_HUMAN_Matreyek_2018.fasta @@ -0,0 +1,2 @@ +>TPMT_HUMAN_Matreyek_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/TPOR_HUMAN_Bridgford_2020.fasta b/conf/data/proteingym_v1/struc_seq/2048/TPOR_HUMAN_Bridgford_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b2efa7362cef206bf126a74e365644ec2a2f6b37 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TPOR_HUMAN_Bridgford_2020.fasta @@ -0,0 +1,2 @@ +>TPOR_HUMAN_Bridgford_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/TRPC_SACS2_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/TRPC_SACS2_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ab46a131e253c5c088748623b8866f9861e60776 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TRPC_SACS2_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_SACS2_Chan_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/TRPC_THEMA_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/TRPC_THEMA_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..84954803a1a29112535323ad796ebbbf305a21a4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/TRPC_THEMA_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_THEMA_Chan_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/UBC9_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/2048/UBC9_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..637df840e15b708e9fbfe72cba0b6f8acf7ab6d6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/UBC9_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>UBC9_HUMAN_Weile_2017 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b/conf/data/proteingym_v1/struc_seq/2048/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta @@ -0,0 +1,2 @@ +>UBE4B_HUMAN_Tsuboyama_2023_3L1X +498,1409,1695,765,2038,1622,1675,155,1955,599,1675,1955,1675,1412,1622,136,1074,1208,1769,1610,872,1200,186,275,1401,1974,553,553,961,1040,1040,524,217,1490,1222,1636,546,640,851,851,1981,1983,1681,1041,909,1412,1041,122,1983,851,1919,478,545,1940,1769,193,961,298,49,402,1980,1038,898,1587,355,1640,310,1111,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/UBE4B_MOUSE_Starita_2013.fasta b/conf/data/proteingym_v1/struc_seq/2048/UBE4B_MOUSE_Starita_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1318bc4bd8164d215ce1f311cfe818501c62d0d1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/UBE4B_MOUSE_Starita_2013.fasta @@ -0,0 +1,2 @@ +>UBE4B_MOUSE_Starita_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/2048/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta b/conf/data/proteingym_v1/struc_seq/2048/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ba0d5d6b3391a5abd3258bb6bd92fe214e5af8c1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta @@ -0,0 +1,2 @@ +>UBR5_HUMAN_Tsuboyama_2023_1I2T +195,1725,523,1221,1097,1739,1032,385,1741,500,412,1073,1073,513,169,412,513,169,1460,1541,513,412,500,802,167,1188,341,1097,2025,1781,2015,2015,1372,289,1454,2025,1049,1638,580,1520,953,1954,523,1954,767,167,1541,1455,1756,604,341,896,320,1568,1640,134,523,368 diff --git a/conf/data/proteingym_v1/struc_seq/2048/VG08_BPP22_Tsuboyama_2023_2GP8.fasta b/conf/data/proteingym_v1/struc_seq/2048/VG08_BPP22_Tsuboyama_2023_2GP8.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c39635618256aeea9db940b310019d3a4f675e0c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/VG08_BPP22_Tsuboyama_2023_2GP8.fasta @@ -0,0 +1,2 @@ +>VG08_BPP22_Tsuboyama_2023_2GP8 +2029,1697,1697,1697,1221,1487,1906,1906,1885,385,1885,1032,1756,385,1032,439,500,1813,1813,934,934,934,934,881,934,934,881,934,1813,1638,898,519,604,1906,320,320,1111,1640,1746,631 diff --git a/conf/data/proteingym_v1/struc_seq/2048/VILI_CHICK_Tsuboyama_2023_1YU5.fasta b/conf/data/proteingym_v1/struc_seq/2048/VILI_CHICK_Tsuboyama_2023_1YU5.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6aad4f54b84de630959259937aee9b4d70290814 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/VILI_CHICK_Tsuboyama_2023_1YU5.fasta @@ -0,0 +1,2 @@ +>VILI_CHICK_Tsuboyama_2023_1YU5 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0000000000000000000000000000000000000000..701a70b1171448e1d0e497f3ec19f8121a4c5977 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/VKOR1_HUMAN_Chiasson_2020_activity.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_activity +740,740,751,458,481,777,1565,170,1253,230,341,1265,1265,385,278,946,604,278,995,1265,604,995,604,604,1136,1893,519,605,921,913,1720,217,1346,415,1444,812,1061,1552,1061,2042,538,769,1602,1602,1602,1020,120,1749,300,599,1629,1629,1533,854,238,627,1673,1300,1284,837,1707,369,1707,260,568,260,405,568,1300,1300,1300,260,1478,1451,234,260,260,715,1951,593,2011,876,1253,1553,137,896,205,995,604,137,292,1265,1361,1147,712,1051,675,675,481,1454,1454,1454,921,519,1136,995,604,1885,1265,604,604,1442,1265,439,1032,278,1756,1032,267,21,395,1744,1272,388,325,1094,1094,1581,622,622,1524,800,1171,921,1097,1147,1701,1572,519,946,946,278,439,137,292,519,896,1786,604,802,1253,1188,75,1178,1565,1565,1586,1986,1986,1215,1496,1496,1133 diff --git a/conf/data/proteingym_v1/struc_seq/2048/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta b/conf/data/proteingym_v1/struc_seq/2048/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..833d75691c13276b90214cea799fd55ff24990fb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta @@ -0,0 +1,2 @@ +>VRPI_BPT7_Tsuboyama_2023_2WNM +665,665,665,485,18,678,139,1321,10,1929,199,232,1929,1929,199,601,1159,1700,2017,1483,232,1665,1929,10,1688,838,553,716,1843,1452,968,961,453,1370,310,1158,340,1397,954,1130,1886,164,30,1970,1970,1970,199,1713,93,199,1947,1599,1849,1734,1437,1133 diff --git a/conf/data/proteingym_v1/struc_seq/2048/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta b/conf/data/proteingym_v1/struc_seq/2048/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2cec4f8fba3ae55f34fe562fd05aef50e4b9cf6e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta @@ -0,0 +1,2 @@ +>YAIA_ECOLI_Tsuboyama_2023_2KVT +1230,1450,619,51,222,707,330,389,1483,290,290,1768,1768,1768,1186,1768,1768,1561,1499,1239,417,707,550,379,522,1298,1298,567,1802,1973,1298,1688,1200,1610,739,1599,381,1043,1678,381,1827,1290,1158,340,650,298,370,1498,1498,453,1371,2023 diff --git a/conf/data/proteingym_v1/struc_seq/2048/YAP1_HUMAN_Araya_2012.fasta b/conf/data/proteingym_v1/struc_seq/2048/YAP1_HUMAN_Araya_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bc0fef386610d8fdad48089ae0b5e3c80eafc223 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/2048/YAP1_HUMAN_Araya_2012.fasta @@ -0,0 +1,2 @@ +>YAP1_HUMAN_Araya_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/A0A192B1T2_9HIV1_Haddox_2018.fasta b/conf/data/proteingym_v1/struc_seq/4096/A0A192B1T2_9HIV1_Haddox_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..79fcef070438a522be003d76859dc4d3104315a1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A0A192B1T2_9HIV1_Haddox_2018.fasta @@ -0,0 +1,2 @@ +>A0A192B1T2_9HIV1_Haddox_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/A0A1I9GEU1_NEIME_Kennouche_2019.fasta b/conf/data/proteingym_v1/struc_seq/4096/A0A1I9GEU1_NEIME_Kennouche_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4c68bed72ceafbb439b99f6f2371260cb4664b64 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A0A1I9GEU1_NEIME_Kennouche_2019.fasta @@ -0,0 +1,2 @@ +>A0A1I9GEU1_NEIME_Kennouche_2019 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0000000000000000000000000000000000000000..835aac73531c0d90d171a7dc54e28f14dd3e9716 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A0A247D711_LISMN_Stadelmann_2021.fasta @@ -0,0 +1,2 @@ +>A0A247D711_LISMN_Stadelmann_2021 +2769,2318,956,956,374,1614,916,3564,2052,2696,3911,913,2736,3948,3422,1447,630,3680,1498,2956,560,1685,3832,3832,3832,2540,3638,2090,3690,2787,3680,2956,1700,1321,2250,25,1899,25,442,3867,2384,1717,630,3084,528,264,2948,1794,1661,1574,151,403,3243,736,1601,0,3613,2661,1765,153,1545,3770,2449,1896,3744,2432,2432,2535,1785,1785,462,507,2870,321,2345,2196,3181,2665,1295,1146,2739,930,1758,2736,4007,2769,2769 diff --git a/conf/data/proteingym_v1/struc_seq/4096/A0A2Z5U3Z0_9INFA_Doud_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/A0A2Z5U3Z0_9INFA_Doud_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e8f0b88a5d21848de104c91d54ae7c29e9e2d5db --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A0A2Z5U3Z0_9INFA_Doud_2016.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Doud_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/A0A2Z5U3Z0_9INFA_Wu_2014.fasta b/conf/data/proteingym_v1/struc_seq/4096/A0A2Z5U3Z0_9INFA_Wu_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ea8d8bff799ae8cf64a5718824e37596fc9d7fa5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A0A2Z5U3Z0_9INFA_Wu_2014.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Wu_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/A4D664_9INFA_Soh_2019.fasta b/conf/data/proteingym_v1/struc_seq/4096/A4D664_9INFA_Soh_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3596b45b526e0b96d24449f3775864471a272cbe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A4D664_9INFA_Soh_2019.fasta @@ -0,0 +1,2 @@ +>A4D664_9INFA_Soh_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/A4GRB6_PSEAI_Chen_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/A4GRB6_PSEAI_Chen_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4f3f40b21e22a9d6e82d0434e184d5be53b94fa3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A4GRB6_PSEAI_Chen_2020.fasta @@ -0,0 +1,2 @@ +>A4GRB6_PSEAI_Chen_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/A4_HUMAN_Seuma_2022.fasta b/conf/data/proteingym_v1/struc_seq/4096/A4_HUMAN_Seuma_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f27c6048cf9be9b37c8bd630b9cb2c2b7f47e5e7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/A4_HUMAN_Seuma_2022.fasta @@ -0,0 +1,2 @@ +>A4_HUMAN_Seuma_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/AACC1_PSEAI_Dandage_2018.fasta b/conf/data/proteingym_v1/struc_seq/4096/AACC1_PSEAI_Dandage_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1e425cb9aa1c46ea0b1a603c26acc86b1d28c43c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/AACC1_PSEAI_Dandage_2018.fasta @@ -0,0 +1,2 @@ +>AACC1_PSEAI_Dandage_2018 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100644 index 0000000000000000000000000000000000000000..b15c7687555affd7939db09a45371a2a5898f124 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ACE2_HUMAN_Chan_2020.fasta @@ -0,0 +1,2 @@ +>ACE2_HUMAN_Chan_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/ADRB2_HUMAN_Jones_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/ADRB2_HUMAN_Jones_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cd598fcb04a09ab9d4d229faeebe32fe4985c0dd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ADRB2_HUMAN_Jones_2020.fasta @@ -0,0 +1,2 @@ +>ADRB2_HUMAN_Jones_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/AICDA_HUMAN_Gajula_2014_3cycles.fasta b/conf/data/proteingym_v1/struc_seq/4096/AICDA_HUMAN_Gajula_2014_3cycles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ac06dd0953bc72b9f75e11e5612a5dcfd8c39705 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/AICDA_HUMAN_Gajula_2014_3cycles.fasta @@ -0,0 +1,2 @@ +>AICDA_HUMAN_Gajula_2014_3cycles 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a/conf/data/proteingym_v1/struc_seq/4096/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta b/conf/data/proteingym_v1/struc_seq/4096/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9dda6ead4b7ec6a5721a52a4248248b07633b788 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta @@ -0,0 +1,2 @@ +>AMFR_HUMAN_Tsuboyama_2023_4G3O +778,374,1579,4,311,149,276,421,149,1182,3376,3495,1547,272,521,2483,380,1387,1634,1177,1520,85,3465,2568,932,824,3872,3872,1745,670,1066,4004,1745,930,670,930,2303,567,1829,913,930,3807,558,207,207,1292,3807 diff --git a/conf/data/proteingym_v1/struc_seq/4096/AMIE_PSEAE_Wrenbeck_2017.fasta b/conf/data/proteingym_v1/struc_seq/4096/AMIE_PSEAE_Wrenbeck_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..55db8257c5897625d73a3f7105b0734502afcb6e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/AMIE_PSEAE_Wrenbeck_2017.fasta @@ -0,0 +1,2 @@ +>AMIE_PSEAE_Wrenbeck_2017 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/ANCSZ_Hobbs_2022.fasta b/conf/data/proteingym_v1/struc_seq/4096/ANCSZ_Hobbs_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..55a1a124ad8798a79cbeb611c21288a87ef8daa3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ANCSZ_Hobbs_2022.fasta @@ -0,0 +1,2 @@ +>ANCSZ_Hobbs_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta b/conf/data/proteingym_v1/struc_seq/4096/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9139ab5d71d51eeb7f8b56b5bdec6a55f7a7ac4c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta @@ -0,0 +1,2 @@ +>ARGR_ECOLI_Tsuboyama_2023_1AOY +778,4,4,1157,311,4,3305,276,1965,3547,606,132,4083,1324,3389,1370,2935,3134,1055,606,1500,1846,606,1978,1829,3206,1192,3804,229,3996,4004,1099,3273,1034,2417,3863,3465,3465,3465,1978,2042,715,135,1866,913,641,1013,1861,3615,2179,1303,1926,2207,2207,1427,2184,1427,2207,3256,98,199,2946,1360,370,1337,3961,1896,494,2509 diff --git a/conf/data/proteingym_v1/struc_seq/4096/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta b/conf/data/proteingym_v1/struc_seq/4096/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e5fa4f8338b87c5d10b6a43ba55fbc61442b40e1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta @@ -0,0 +1,2 @@ +>B2L11_HUMAN_Dutta_2010_binding-Mcl-1 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a/conf/data/proteingym_v1/struc_seq/4096/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta b/conf/data/proteingym_v1/struc_seq/4096/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8db49863c2fb61477959252747250f13b35a7c23 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta @@ -0,0 +1,2 @@ +>BBC1_YEAST_Tsuboyama_2023_1TG0 +2241,3469,344,865,482,2485,747,2249,2249,2338,2338,4021,2725,3643,248,3165,2492,213,1018,63,2725,393,2338,2338,2756,4021,2942,482,239,295,150,3444,1499,1499,152,2540,3867,3867,1017,775,4057,2124,2363,483,3626,1427,1427,755,755,2243,1356,3444,1353,3247,2872,3750,80,1693,1503,4064,2180,3242,41,3469 diff --git a/conf/data/proteingym_v1/struc_seq/4096/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta b/conf/data/proteingym_v1/struc_seq/4096/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f5834d5dba9ea0f5362d9bc03cde6bb6b8866352 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta @@ -0,0 +1,2 @@ +>BCHB_CHLTE_Tsuboyama_2023_2KRU +3649,3080,1082,2223,170,2735,2246,259,1423,882,1002,3240,3561,1724,2281,3561,1829,2767,1829,2281,4004,715,2665,1772,2710,2846,841,2013,1810,3206,2196,1256,1613,2143,544,1208,1737,1280,1225,2820,3330,3863,2629,2315,2264,2229,841,2722,2937,2229,2647,621 diff --git a/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Deng_2012.fasta b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Deng_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fba2be016bb74d6e5c649ebdf33c9b87f873865a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Deng_2012.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Deng_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Firnberg_2014.fasta b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Firnberg_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..365b1d9640bc2a993999e55b3495f7bf2adff842 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Firnberg_2014.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Firnberg_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Jacquier_2013.fasta b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Jacquier_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..50d02bf77587406fda35747f3f0752edf3886bf8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Jacquier_2013.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Jacquier_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Stiffler_2015.fasta b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Stiffler_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..263159cedc8da9ea8dd8f53a1c62d2ad3ce5634a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BLAT_ECOLX_Stiffler_2015.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Stiffler_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/BRCA1_HUMAN_Findlay_2018.fasta b/conf/data/proteingym_v1/struc_seq/4096/BRCA1_HUMAN_Findlay_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0e797bbb44e0e80398d5824aef37f6f7dfee0096 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BRCA1_HUMAN_Findlay_2018.fasta @@ -0,0 +1,2 @@ +>BRCA1_HUMAN_Findlay_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/4096/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..038a3ac1988dbd2622347d7c288f38662f59e1a9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>BRCA2_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/C6KNH7_9INFA_Lee_2018.fasta b/conf/data/proteingym_v1/struc_seq/4096/C6KNH7_9INFA_Lee_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..81485732be6c29473b0b5c5ce6fc61b9a6cddd13 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/C6KNH7_9INFA_Lee_2018.fasta @@ -0,0 +1,2 @@ +>C6KNH7_9INFA_Lee_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CALM1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/4096/CALM1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f74bea78c93138d874b05adf05c2070925eedad3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CALM1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>CALM1_HUMAN_Weile_2017 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b/conf/data/proteingym_v1/struc_seq/4096/CAPSD_AAV2S_Sinai_2021.fasta @@ -0,0 +1,2 @@ +>CAPSD_AAV2S_Sinai_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CAR11_HUMAN_Meitlis_2020_gof.fasta b/conf/data/proteingym_v1/struc_seq/4096/CAR11_HUMAN_Meitlis_2020_gof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ad90ef70ce1654b30ea395369e014b8665ea82c4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CAR11_HUMAN_Meitlis_2020_gof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_gof 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CAR11_HUMAN_Meitlis_2020_lof.fasta b/conf/data/proteingym_v1/struc_seq/4096/CAR11_HUMAN_Meitlis_2020_lof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..64818cd9a626e1107478612022ce8a00b258734e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CAR11_HUMAN_Meitlis_2020_lof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_lof 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CAS9_STRP1_Spencer_2017_positive.fasta b/conf/data/proteingym_v1/struc_seq/4096/CAS9_STRP1_Spencer_2017_positive.fasta new file mode 100644 index 0000000000000000000000000000000000000000..11f5cf69d3eb999b83909f852b6b72677c2817ce --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CAS9_STRP1_Spencer_2017_positive.fasta @@ -0,0 +1,2 @@ +>CAS9_STRP1_Spencer_2017_positive 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CASP3_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/CASP3_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..405ef8a865a924623f66af8a69e68abc3cb54c37 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CASP3_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP3_HUMAN_Roychowdhury_2020 +2239,2693,2693,3715,2080,1750,459,2242,524,3182,3654,854,3447,4092,4092,54,743,1835,3302,583,8,583,109,1952,1691,3502,1816,3027,3062,2377,1062,4050,4050,3992,2096,309,3256,285,1324,1802,185,1288,2972,3411,2903,2359,2315,3436,3318,3206,539,2613,930,3104,3411,3559,3675,3860,8,583,3302,1204,4016,3023,1108,2832,3169,639,3720,2211,1333,420,2421,3652,3958,256,3102,3440,1649,1393,953,3182,3029,3182,3141,3141,1045,298,3572,2160,2982,1952,1665,1611,1665,1665,3310,359,872,389,2472,1918,2802,728,2305,2179,1686,2557,3628,3196,2288,857,55,2288,3368,3531,1662,2445,3079,3102,3440,921,460,698,333,3007,3141,1204,653,2580,86,2490,3879,1054,3059,1482,1665,1305,1482,480,2343,1247,751,1003,1882,1882,1103,2728,667,103,103,3535,3535,3535,103,103,2728,224,873,1698,1254,416,1430,3686,1470,3184,3651,3630,927,944,3707,637,1667,1305,3916,112,3059,1305,326,1061,174,303,3657,1324,2118,607,3439,1490,858,2092,581,2950,1378,2415,3756,3587,2042,978,3915,1601,266,266,1377,3853,3784,360,111,2739,369,2914,581,1344,1357,2105,556,3791,519,3389,2474,1078,4084,2725,471,781,1122,1122,894,928,2572,1,1928,1042,1784,4084,2694,4018,648,2312,3881,3716,1567,3838,1030,3866,3789,524,178,3098,1254,99,2656,3668,3891,3891,3668,1352,1352,117 diff --git a/conf/data/proteingym_v1/struc_seq/4096/CASP7_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/CASP7_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..00e9ebfd06e9de8b4f38231db2acb6fdf1019ea2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CASP7_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP7_HUMAN_Roychowdhury_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta b/conf/data/proteingym_v1/struc_seq/4096/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta new file mode 100644 index 0000000000000000000000000000000000000000..666570c83853ced418cb9bb9cf560a3b625b5b22 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta @@ -0,0 +1,2 @@ +>CATR_CHLRE_Tsuboyama_2023_2AMI +860,2318,2318,2318,2046,1104,1758,3001,1544,3305,3305,1656,421,1936,1495,2003,4041,136,3878,3446,1363,1231,552,1967,1967,1967,1936,3403,3157,1936,2196,2877,661,2143,734,716,716,3431,680,2450,1744,1578,1941,3465,3465,2229,1936,930,3206,3030,66,1548,4041,3878,3396,99,935,552,2375,1967,1967,1967,3236,2437,2617,2573,2573,1758,4041,2079,3445,621 diff --git a/conf/data/proteingym_v1/struc_seq/4096/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta b/conf/data/proteingym_v1/struc_seq/4096/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4d1dd07019261c50af0ed3231259d683ceffde67 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta @@ -0,0 +1,2 @@ +>CBPA2_HUMAN_Tsuboyama_2023_1O6X +954,954,2692,3473,3242,113,198,2406,1242,3161,4000,714,1448,1291,2596,2507,1846,3175,2713,1846,2686,2281,3933,1084,1084,31,1785,1456,2671,3419,2358,3582,2824,3281,1038,992,308,1813,3843,3859,1784,2942,871,3708,1868,2564,3678,1126,1887,2043,898,2034,1084,4005,3412,1310,641,2042,2696,1024,641,1609,246,735,3602,289,1760,198,3708,3004,2614,2436 diff --git a/conf/data/proteingym_v1/struc_seq/4096/CBS_HUMAN_Sun_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/CBS_HUMAN_Sun_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..38b87efe7438b4cb79c239363db2389b73e8c44c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CBS_HUMAN_Sun_2020.fasta @@ -0,0 +1,2 @@ +>CBS_HUMAN_Sun_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta b/conf/data/proteingym_v1/struc_seq/4096/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta new file mode 100644 index 0000000000000000000000000000000000000000..359551fb06158c5edb70985ec37f076aa0e805b3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta @@ -0,0 +1,2 @@ +>CBX4_HUMAN_Tsuboyama_2023_2K28 +1428,751,2963,645,1697,1741,2014,423,3801,1587,2854,2024,2024,2283,2571,3635,291,3698,862,2090,2177,152,3532,1337,1122,3364,60,3781,423,264,1948,2934,560,488,3524,3312,4060,3509,1729,3509,2409,682,2373,2452,2613,550,559,2937,621,559 diff --git a/conf/data/proteingym_v1/struc_seq/4096/CCDB_ECOLI_Adkar_2012.fasta b/conf/data/proteingym_v1/struc_seq/4096/CCDB_ECOLI_Adkar_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ab97f9888b2af16e044c26faf0c9dc295ab75054 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CCDB_ECOLI_Adkar_2012.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Adkar_2012 +1150,1459,3115,2525,228,3766,102,777,777,471,220,248,3780,2725,2725,775,2485,747,391,1997,3246,3541,1428,248,1199,248,1048,1097,1126,279,812,1815,2485,3344,2300,2485,1429,560,560,309,3496,1782,840,3961,1687,1636,3279,3442,1795,1989,1945,20,4035,3084,1281,3846,1921,3955,3407,560,560,3585,2137,3260,2557,759,3926,80,113,3833,3833,1975,1672,2279,2678,2180,2571,2892,87,765,831,2179,940,2210,3223,236,436,2686,4063,1483,3270,3370,1795,1795,1795,1795,1989,3978,1206,3978,1206 diff --git a/conf/data/proteingym_v1/struc_seq/4096/CCDB_ECOLI_Tripathi_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/CCDB_ECOLI_Tripathi_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9bf0ad002d25d7a71dede75b0fb2b68cc981f7e3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CCDB_ECOLI_Tripathi_2016.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Tripathi_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta b/conf/data/proteingym_v1/struc_seq/4096/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c08db8de4309a1bcef5a85a1569fa89a2a9808eb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta @@ -0,0 +1,2 @@ +>CD19_HUMAN_Klesmith_2019_FMC_singles 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CP2C9_HUMAN_Amorosi_2021_abundance.fasta b/conf/data/proteingym_v1/struc_seq/4096/CP2C9_HUMAN_Amorosi_2021_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9b8c95f0c9ffb95ebba2de61916369c25a4e4111 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CP2C9_HUMAN_Amorosi_2021_abundance.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_abundance 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CP2C9_HUMAN_Amorosi_2021_activity.fasta b/conf/data/proteingym_v1/struc_seq/4096/CP2C9_HUMAN_Amorosi_2021_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d003f3d02d5666d46bd9507c16027a39483f3784 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CP2C9_HUMAN_Amorosi_2021_activity.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta b/conf/data/proteingym_v1/struc_seq/4096/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c8f6f2374fb6476f7006bd6d702006c71961d113 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta @@ -0,0 +1,2 @@ +>CSN4_MOUSE_Tsuboyama_2023_1UFM +3792,105,281,3300,3183,3183,1351,2456,2252,1002,4005,421,270,313,421,3305,841,3613,647,2914,3211,2971,1423,3335,3520,2715,4068,3321,2105,1239,1014,2196,798,798,2159,2345,507,798,2345,2345,1978,2812,1978,1936,634,3305,1810,2613,853,3566,2038,680,88,3020,3103,518,2599,3803,806,199,1399,1203,863,3129,1216,1823,2304,1804,2340,1928,2699,392 diff --git a/conf/data/proteingym_v1/struc_seq/4096/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta b/conf/data/proteingym_v1/struc_seq/4096/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2c30b1fc4faba797117527ac395a908d5d10d29d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta @@ -0,0 +1,2 @@ +>CUE1_YEAST_Tsuboyama_2023_2MYX +2478,2477,2599,733,1734,2151,1145,1704,3973,1857,3207,1501,1146,2739,1066,3332,1681,1387,250,1221,3114,1810,2500,81,842,1507,1220,1931,1483,3595,2477,3943,2974,3760,670,1745,4091,1765,167,1613,3566,30,3219,716,680,680,4074,3442,3128,3972,1360,224 diff --git a/conf/data/proteingym_v1/struc_seq/4096/D7PM05_CLYGR_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/4096/D7PM05_CLYGR_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4268d46a0de62d39fd7b384af06c5fcd8f65d040 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/D7PM05_CLYGR_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>D7PM05_CLYGR_Somermeyer_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/DLG4_HUMAN_Faure_2021.fasta b/conf/data/proteingym_v1/struc_seq/4096/DLG4_HUMAN_Faure_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2cad0e955166e0e15f1e463061ed64a141350044 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DLG4_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>DLG4_HUMAN_Faure_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/DLG4_RAT_McLaughlin_2012.fasta b/conf/data/proteingym_v1/struc_seq/4096/DLG4_RAT_McLaughlin_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6871a0996dfc7d9349b13edbde9fb47a5a440e1e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DLG4_RAT_McLaughlin_2012.fasta @@ -0,0 +1,2 @@ +>DLG4_RAT_McLaughlin_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta b/conf/data/proteingym_v1/struc_seq/4096/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..25dce297d28da642f58346247cf406f8f26bd6b4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta @@ -0,0 +1,2 @@ +>DN7A_SACS2_Tsuboyama_2023_1JIC +1629,2692,2363,483,2703,2703,2024,2024,2024,2703,2827,373,152,3541,2420,3541,2188,3698,1948,102,3004,3897,3981,2384,332,3128,3993,3981,1757,1376,3287,3016,1019,2090,3263,25,2080,248,3638,1948,1255,1565,115,3648,2552,3138,2087,1441,3138,3478,2509,2043,3179,3229,3478 diff --git a/conf/data/proteingym_v1/struc_seq/4096/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta b/conf/data/proteingym_v1/struc_seq/4096/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..78bf514cd27574104c9e7c95001b012925b847ae --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta @@ -0,0 +1,2 @@ +>DNJA1_HUMAN_Tsuboyama_2023_2LO1 +2848,1886,1229,2505,3921,95,3652,1705,1028,3446,417,2656,2067,1751,1145,502,1941,3400,2264,22,65,3754,824,930,3326,1699,1856,615,614,3632,328,861,3017,328,1351,131,328,521,1454,561,3556,3506,1792,3013,727,3687,3013,807,2879,3537,932,3240,507,3346,2281,2281,3537,2281,3458,2417,3465,740,740,468,1113 diff --git a/conf/data/proteingym_v1/struc_seq/4096/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta b/conf/data/proteingym_v1/struc_seq/4096/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c4ae0c79aeb6121f19257ff03b68072941fb3aab --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta @@ -0,0 +1,2 @@ +>DOCK1_MOUSE_Tsuboyama_2023_2M0Y +392,392,751,4089,3642,2478,3592,590,590,391,1620,228,831,2249,2689,3665,4021,2923,2606,3810,426,3636,2929,2606,2923,393,2338,2338,3859,1303,777,4064,3766,3766,2485,3893,2060,2678,3246,1195,1422,2197,890,1465,3801,3698,3626,3084,3609,3395,2893,1963,1607,1582,1359,2942,3244,659,528,3765,2249,228,3964,3619,1622,2117 diff --git a/conf/data/proteingym_v1/struc_seq/4096/DYR_ECOLI_Nguyen_2023.fasta b/conf/data/proteingym_v1/struc_seq/4096/DYR_ECOLI_Nguyen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6e5e395128b5aa8f1c9845d65055e733faba13b2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DYR_ECOLI_Nguyen_2023.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Nguyen_2023 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0000000000000000000000000000000000000000..61d5f184b112b8615dcf337fcbc428d2c75c1079 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/DYR_ECOLI_Thompson_2019.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Thompson_2019 +1569,385,3226,3226,3579,1054,1932,944,2628,1438,1123,1305,4031,1674,1123,605,394,1151,3771,3383,2561,2961,3609,3985,1773,1573,1326,3865,1346,3933,3463,1162,1346,905,1608,3262,3262,594,3831,8,884,3860,638,638,355,355,3217,915,3235,3235,3431,3154,3795,2019,1594,2111,594,1992,3302,884,76,2527,2104,2404,3794,2865,3505,816,2865,427,3397,3794,76,1969,638,118,2158,3677,1264,1624,2831,2050,3920,2026,1366,1062,3280,1569,1569,297,2272,3836,1683,649,638,2828,2050,2377,1188,1539,3154,1486,1831,3388,3681,2899,1102,1933,557,1900,1532,536,1900,1583,2954,1136,183,1064,2561,918,2416,1123,2164,2817,789,1015,442,678,1244,2803,4022,3981,2413,2371,3517,419,3680,3004,2998,1513,2060,4021,2983,758,2532,2751,754,3516,2081,2060,3930,989,4009,986,3805,83,1583,648,2346 diff --git a/conf/data/proteingym_v1/struc_seq/4096/ENVZ_ECOLI_Ghose_2023.fasta b/conf/data/proteingym_v1/struc_seq/4096/ENVZ_ECOLI_Ghose_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..52b3e5273accfc5d7b006775fe65235659afe2f8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ENVZ_ECOLI_Ghose_2023.fasta @@ -0,0 +1,2 @@ +>ENVZ_ECOLI_Ghose_2023 +778,2736,4007,4,2736,1579,1435,1435,1577,1830,1435,2347,3305,421,1435,3305,1161,1222,3495,708,3495,1222,1185,1446,1432,3958,838,17,339,17,3726,666,666,3726,272,3804,4004,1444,135,3495,2297,1830,634,629,3305,3305,1435,3305,3305,1435,1435,3305,634,1435,1912,2264,1912,2937,2722,2722 diff --git a/conf/data/proteingym_v1/struc_seq/4096/ENV_HV1B9_DuenasDecamp_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/ENV_HV1B9_DuenasDecamp_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c59dc56b7f917de72e7beca8de0d4094be2abf36 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ENV_HV1B9_DuenasDecamp_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1B9_DuenasDecamp_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/ENV_HV1BR_Haddox_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/ENV_HV1BR_Haddox_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..669a9bfb3b7b8ba52f21d7649ab3a05661ada862 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ENV_HV1BR_Haddox_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1BR_Haddox_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta b/conf/data/proteingym_v1/struc_seq/4096/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1e8487d9a1e4dd5957091a376b42845966191bd6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta @@ -0,0 +1,2 @@ +>EPHB2_HUMAN_Tsuboyama_2023_1F0M +2043,1113,1362,123,2839,626,1623,376,321,2570,53,3051,1676,3051,2570,1870,870,2423,2174,409,1477,1681,2274,3814,2586,3863,3401,1456,494,2020,1233,3973,2976,3973,776,790,3234,3273,2325,2748,2325,3252,1943,1477,129,2465,1396,1396,70,3726,302,1953,2281,3756,2264,1435,90,838,294,634,2079,2052,1912,621,1912,621 diff --git a/conf/data/proteingym_v1/struc_seq/4096/ERBB2_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/ERBB2_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1c72646d27d13cca4bad3a110952508c7449a1fb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ERBB2_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>ERBB2_HUMAN_Elazar_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/ESTA_BACSU_Nutschel_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/ESTA_BACSU_Nutschel_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..086eea371b18a82fec8ac1be2db0914420fd5356 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ESTA_BACSU_Nutschel_2020.fasta @@ -0,0 +1,2 @@ +>ESTA_BACSU_Nutschel_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/F7YBW7_MESOW_Ding_2023.fasta b/conf/data/proteingym_v1/struc_seq/4096/F7YBW7_MESOW_Ding_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..303da1c28229dbfb8302d823b79e6b8ba72ed634 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/F7YBW7_MESOW_Ding_2023.fasta @@ -0,0 +1,2 @@ +>F7YBW7_MESOW_Ding_2023 +1881,3715,3715,2693,3640,2728,2728,2728,2728,1236,2007,1264,2293,3001,2293,1846,3001,421,2861,2861,3977,1292,1292,1292,214,214,1101,1292,214,1101,930,302,4004,930,294,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1222,1222,1222,1222,1222,1222,1435,1435,1435,1435,1435,1435,1435,1435,1656,1656,3776,3829,3829,70,875,900,2588,2047,2728,143,28,2007,2293,2667,2667,2667,1544,1435,1435,1435,1435,3776,3776,1084,70,70,671,3961,840,2080,2080,352 diff --git a/conf/data/proteingym_v1/struc_seq/4096/F7YBW8_MESOW_Aakre_2015.fasta b/conf/data/proteingym_v1/struc_seq/4096/F7YBW8_MESOW_Aakre_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2a09927e4ca07f6f616846c94a29605e72d42520 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/F7YBW8_MESOW_Aakre_2015.fasta @@ -0,0 +1,2 @@ +>F7YBW8_MESOW_Aakre_2015 +1881,3715,3715,2693,3640,2728,2728,2728,2728,1236,2007,1264,2293,3001,2293,1846,3001,421,2861,2861,3977,1292,1292,1292,214,214,1101,1292,214,1101,930,302,4004,930,294,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1222,1222,1222,1222,1222,1222,1435,1435,1435,1435,1435,1435,1435,1435,1656,1656,3776,3829,3829,70,875,900,2588,2047,2728,143,28,2007,2293,2667,2667,2667,1544,1435,1435,1435,1435,3776,3776,1084,70,70,671,3961,840,2080,2080,352 diff --git a/conf/data/proteingym_v1/struc_seq/4096/FECA_ECOLI_Tsuboyama_2023_2D1U.fasta b/conf/data/proteingym_v1/struc_seq/4096/FECA_ECOLI_Tsuboyama_2023_2D1U.fasta new file mode 100644 index 0000000000000000000000000000000000000000..39edfd7db3f3a5dfd260989bb7d46b31cbe34b2b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/FECA_ECOLI_Tsuboyama_2023_2D1U.fasta @@ -0,0 +1,2 @@ +>FECA_ECOLI_Tsuboyama_2023_2D1U +2241,2278,2278,3130,2357,829,1672,3650,2273,1180,916,1012,3157,1149,599,2975,3747,1024,3688,3491,4044,1533,1219,957,1678,2908,3217,2907,3704,3138,3885,2128,1736,3554,2198,2208,1862,1862,52,3701,3877,6,3922,3922,403,3911,3430,2464,735,3497,2128,305,2759,901,3474,306,3599,451,2692,2312,823,1589,1589,2088,3133,3268,1867,1933,3451,823,2611,2386 diff --git a/conf/data/proteingym_v1/struc_seq/4096/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta b/conf/data/proteingym_v1/struc_seq/4096/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..232282b2409a0b3bfb5ae205eb2080631b0ceea9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta @@ -0,0 +1,2 @@ +>FKBP3_HUMAN_Tsuboyama_2023_2KFV 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/GCN4_YEAST_Staller_2018.fasta b/conf/data/proteingym_v1/struc_seq/4096/GCN4_YEAST_Staller_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f779076524f4b560b34ba376bd17d97e782c307f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/GCN4_YEAST_Staller_2018.fasta @@ -0,0 +1,2 @@ +>GCN4_YEAST_Staller_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/GDIA_HUMAN_Silverstein_2021.fasta b/conf/data/proteingym_v1/struc_seq/4096/GDIA_HUMAN_Silverstein_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ac5aacef127dc92a2457843d9960b2ac1a9e56c0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/GDIA_HUMAN_Silverstein_2021.fasta @@ -0,0 +1,2 @@ +>GDIA_HUMAN_Silverstein_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/GFP_AEQVI_Sarkisyan_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/GFP_AEQVI_Sarkisyan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..469235fa7eb5afee696d9b83fcdeade72b791b7f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/GFP_AEQVI_Sarkisyan_2016.fasta @@ -0,0 +1,2 @@ +>GFP_AEQVI_Sarkisyan_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/GLPA_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/GLPA_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a6797725636eb30a20268d872381b3091ddd965c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/GLPA_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>GLPA_HUMAN_Elazar_2016 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b/conf/data/proteingym_v1/struc_seq/4096/GRB2_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>GRB2_HUMAN_Faure_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta b/conf/data/proteingym_v1/struc_seq/4096/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ce465d3132d4177474bedeb7e17b4749ec2fb8bd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta @@ -0,0 +1,2 @@ +>HCP_LAMBD_Tsuboyama_2023_2L6Q +956,4007,2052,403,3294,1845,448,3730,2105,2890,1291,1688,1404,1965,2529,204,1229,4086,978,1861,2557,3749,4018,1997,2557,786,3803,3599,1184,1416,1926,1038,1948,4018,1688,2443,1327,624,108,2084,1980,2739,1446,1656,90,90,90,4075,2297,1577,2937,2079,2052,2079,740 diff --git a/conf/data/proteingym_v1/struc_seq/4096/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta b/conf/data/proteingym_v1/struc_seq/4096/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..720da57aeb706f8dcba2982e4c0d34b9a359fc1a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta @@ -0,0 +1,2 @@ +>HECD1_HUMAN_Tsuboyama_2023_3DKM +778,778,448,311,3777,2971,1055,4078,2248,3608,2983,590,3021,1266,391,747,3953,1561,1715,2635,1019,1237,3832,2576,1286,147,348,2295,1284,2633,1336,1572,2550,1815,3953,477,3766,3893,3489,2689,98,2053,1512,3139,2884,2249,150,482,2854,2212,3244,2701,62,1996,2854,2793,150,4064,1996,1481,2134,69,3963,3963,1529,2702,1240,1958,764,189,819,2521 diff --git a/conf/data/proteingym_v1/struc_seq/4096/HEM3_HUMAN_Loggerenberg_2023.fasta b/conf/data/proteingym_v1/struc_seq/4096/HEM3_HUMAN_Loggerenberg_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0b02f395fb60d0b51e96467b9209276e2bd66df8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HEM3_HUMAN_Loggerenberg_2023.fasta @@ -0,0 +1,2 @@ +>HEM3_HUMAN_Loggerenberg_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HIS7_YEAST_Pokusaeva_2019.fasta b/conf/data/proteingym_v1/struc_seq/4096/HIS7_YEAST_Pokusaeva_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..561609b7fd62fce5ba2fbcec5787361d9c0122f4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HIS7_YEAST_Pokusaeva_2019.fasta @@ -0,0 +1,2 @@ +>HIS7_YEAST_Pokusaeva_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HMDH_HUMAN_Jiang_2019.fasta b/conf/data/proteingym_v1/struc_seq/4096/HMDH_HUMAN_Jiang_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5bc25f68dd51ce7e3ba43ee7be8e590e2ed19919 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HMDH_HUMAN_Jiang_2019.fasta @@ -0,0 +1,2 @@ +>HMDH_HUMAN_Jiang_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta b/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dd37f8021d895405ba4268b416f82435888853e9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Flynn_2019.fasta b/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Flynn_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..32e5b24e77ca4af6a90fba95a928b8e139913ef8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Flynn_2019.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Flynn_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Mishra_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Mishra_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0d96c386427c3c8b0512f7a61db7442f8529b57b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HSP82_YEAST_Mishra_2016.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Mishra_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HXK4_HUMAN_Gersing_2022_activity.fasta b/conf/data/proteingym_v1/struc_seq/4096/HXK4_HUMAN_Gersing_2022_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..247c8c18943f1744d8136f834dce1057968fbe32 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HXK4_HUMAN_Gersing_2022_activity.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2022_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/HXK4_HUMAN_Gersing_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/4096/HXK4_HUMAN_Gersing_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b5c0dd27f51c96d37032eb56bfd0ce80dc56b216 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/HXK4_HUMAN_Gersing_2023_abundance.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2023_abundance 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/I6TAH8_I68A0_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/4096/I6TAH8_I68A0_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..64c282db955bba73b42771afd9041178fbded467 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/I6TAH8_I68A0_Doud_2015.fasta @@ -0,0 +1,2 @@ +>I6TAH8_I68A0_Doud_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/IF1_ECOLI_Kelsic_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/IF1_ECOLI_Kelsic_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f45db1dd27bfddd8b32a076cd4595dbb1da13d85 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/IF1_ECOLI_Kelsic_2016.fasta @@ -0,0 +1,2 @@ +>IF1_ECOLI_Kelsic_2016 +281,281,281,99,100,3787,264,87,2485,2300,2300,3766,880,3893,1587,121,2884,2672,1097,1097,1059,3214,334,1743,2664,1948,777,2177,3258,895,1119,334,334,334,3758,4051,957,2458,2431,2175,3251,2858,2039,3431,1621,3319,1790,3573,4021,2060,2060,102,2664,3663,3976,3457,1119,1812,165,646,191,2343,2746,2200,452,2723,83,1583,2503,1356,2240,685 diff --git a/conf/data/proteingym_v1/struc_seq/4096/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta b/conf/data/proteingym_v1/struc_seq/4096/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7ac4a55db371e4829a3a02966e623b9a274986dd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta @@ -0,0 +1,2 @@ +>ILF3_HUMAN_Tsuboyama_2023_2L33 +126,3662,1013,365,2087,443,1578,1112,146,808,1888,2118,3486,30,88,2018,3251,1492,3190,2803,763,3153,3708,3517,2581,180,3897,1990,951,951,1209,309,3781,3846,3981,2269,2269,1679,1498,1411,2384,1673,26,2024,612,1652,803,1619,3031,803,3596,3602,2952,2712,365,365,3031,2260,1071,3321,3490,305,3114,2367,3422,3601,3103,504,3103,1206,203 diff --git a/conf/data/proteingym_v1/struc_seq/4096/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta b/conf/data/proteingym_v1/struc_seq/4096/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cc6032814bd78e431f49c10f3694413a76f71de4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta @@ -0,0 +1,2 @@ +>ISDH_STAAW_Tsuboyama_2023_2LHR 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b/conf/data/proteingym_v1/struc_seq/4096/KCNE1_HUMAN_Muhammad_2023_function.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_function +3792,1881,3792,105,2535,1361,3509,3509,2489,2489,1656,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,2686,2489,3509,3509,1361,1361,2535,3961,3074,1899,894,1190,511,511,1084,3941,3776,2686,2720,715,715,715,2894,2894,2894,2894,2894,2894,2894,715,1656,1656,1656,1656,1656,1656,1656,1435,1435,1435,1435,1435,1435,1656,1656,3776,3941,31,828,31,31,2432,2535,2535,2535,2535,2535,1361,1361,3509,2489,2489,2489,715,1656,1435,1435,1435,1435,1435,1435,1435,1435,1435,1435,1544,3776,1089,3829,3829,875,1959,2588,1687,1687,3668,3233,1056,1056,1056,1056,3233,3074,3668,3668,1687,1005,1005,1005,1005,2919,2919,1189,1189 diff --git a/conf/data/proteingym_v1/struc_seq/4096/KCNH2_HUMAN_Kozek_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/KCNH2_HUMAN_Kozek_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0019f5f00d0cf5979310ad5ce0fb2159bca07261 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/KCNH2_HUMAN_Kozek_2020.fasta @@ -0,0 +1,2 @@ +>KCNH2_HUMAN_Kozek_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta b/conf/data/proteingym_v1/struc_seq/4096/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..56e421f42333dceceb0afd224ba53f740c9ac7c4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_function 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta b/conf/data/proteingym_v1/struc_seq/4096/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cdbbcaeca00e0f28ee7e17fc6ea9b03104c878f5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_surface 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/KKA2_KLEPN_Melnikov_2014.fasta b/conf/data/proteingym_v1/struc_seq/4096/KKA2_KLEPN_Melnikov_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1b148f16122eadd494082ba76c87fef478280336 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/KKA2_KLEPN_Melnikov_2014.fasta @@ -0,0 +1,2 @@ +>KKA2_KLEPN_Melnikov_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/LGK_LIPST_Klesmith_2015.fasta b/conf/data/proteingym_v1/struc_seq/4096/LGK_LIPST_Klesmith_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b802b91130a42046bccc66cf7e13b75be7f73a5f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/LGK_LIPST_Klesmith_2015.fasta @@ -0,0 +1,2 @@ +>LGK_LIPST_Klesmith_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/LYAM1_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/LYAM1_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8e0b191a845ee5dd27f20cb85102573ed539a464 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/LYAM1_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>LYAM1_HUMAN_Elazar_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta b/conf/data/proteingym_v1/struc_seq/4096/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta new file mode 100644 index 0000000000000000000000000000000000000000..32632389f85adc1f3a6ae8feb7d72318228f57ea --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta @@ -0,0 +1,2 @@ +>MAFG_MOUSE_Tsuboyama_2023_1K1V +589,346,2771,2054,187,3037,2165,1086,3203,2046,2560,2046,1396,1145,1065,1084,1486,569,2020,2020,3097,3097,1396,3533,3804,569,219,1544,2264,90,2029,1792,1836,2052,3564,465,465,1089,1089,1758,3318 diff --git a/conf/data/proteingym_v1/struc_seq/4096/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta b/conf/data/proteingym_v1/struc_seq/4096/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..03ee2979d480a8d1b88a8ac8eb4edfbe307a16f3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta @@ -0,0 +1,2 @@ +>MBD11_ARATH_Tsuboyama_2023_6ACV +3432,1255,2781,1255,3680,3188,1368,3246,1968,2699,548,423,3287,3292,3292,3690,423,2243,2270,3116,644,3891,644,2270,2270,2243,423,1948,3663,1700,3344,2362,2219,3480,3993,3880,1847,3583,3084,3583,246,1158,58,3408,1439,3348,2639,3920,3920,4077,1536,2727,2727,2172,2727,2178,3745,12,1337,3422,2250,2243,220,3867,1687,1703 diff --git a/conf/data/proteingym_v1/struc_seq/4096/MET_HUMAN_Estevam_2023.fasta b/conf/data/proteingym_v1/struc_seq/4096/MET_HUMAN_Estevam_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3c4308ed9d83a9315c4c731126647caf034c22b0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MET_HUMAN_Estevam_2023.fasta @@ -0,0 +1,2 @@ +>MET_HUMAN_Estevam_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MK01_HUMAN_Brenan_2016.fasta b/conf/data/proteingym_v1/struc_seq/4096/MK01_HUMAN_Brenan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2796ccfe3123cb23dbf4dd47204a7e31ebb0703f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MK01_HUMAN_Brenan_2016.fasta @@ -0,0 +1,2 @@ +>MK01_HUMAN_Brenan_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MLAC_ECOLI_MacRae_2023.fasta b/conf/data/proteingym_v1/struc_seq/4096/MLAC_ECOLI_MacRae_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..863d37327417cbccaf1dc38e79e2b563708b57a0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MLAC_ECOLI_MacRae_2023.fasta @@ -0,0 +1,2 @@ +>MLAC_ECOLI_MacRae_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MSH2_HUMAN_Jia_2020.fasta b/conf/data/proteingym_v1/struc_seq/4096/MSH2_HUMAN_Jia_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..51eb854fb665801e13afeb231176774bb5d1219c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MSH2_HUMAN_Jia_2020.fasta @@ -0,0 +1,2 @@ +>MSH2_HUMAN_Jia_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MTH3_HAEAE_RockahShmuel_2015.fasta b/conf/data/proteingym_v1/struc_seq/4096/MTH3_HAEAE_RockahShmuel_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..408132a5ab10d5d00eb9abae1e5994298f51ee5f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MTH3_HAEAE_RockahShmuel_2015.fasta @@ -0,0 +1,2 @@ +>MTH3_HAEAE_RockahShmuel_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MTHR_HUMAN_Weile_2021.fasta b/conf/data/proteingym_v1/struc_seq/4096/MTHR_HUMAN_Weile_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9b4c16f975ef9522910ac4db752114ee32f537b0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MTHR_HUMAN_Weile_2021.fasta @@ -0,0 +1,2 @@ +>MTHR_HUMAN_Weile_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta b/conf/data/proteingym_v1/struc_seq/4096/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9ecee026ebd809a6ddc52eadff001bd4990ab148 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta @@ -0,0 +1,2 @@ +>MYO3_YEAST_Tsuboyama_2023_2BTT +2651,184,3469,1312,747,102,2884,2249,762,762,1777,1582,1019,25,25,3795,2492,2188,1017,152,1123,637,2338,2338,3489,3021,4064,747,747,239,3893,1587,423,2893,1963,1426,3583,2893,3626,1852,775,2571,1368,3849,3322,645,2282,1459,812,1852,1465,1503,548,3626,3765,4079,747,244,3568,926,3469 diff --git a/conf/data/proteingym_v1/struc_seq/4096/NCAP_I34A1_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/4096/NCAP_I34A1_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..63a17a8975c09e702a3e7690e9fa7c7f8715f9e6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/NCAP_I34A1_Doud_2015.fasta @@ -0,0 +1,2 @@ +>NCAP_I34A1_Doud_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/4096/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta b/conf/data/proteingym_v1/struc_seq/4096/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5d54193ab6e3e774b15393309f38b800f32fc745 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta @@ -0,0 +1,2 @@ +>NKX31_HUMAN_Tsuboyama_2023_2L9R +1355,1355,3713,2945,3497,468,1319,4041,1319,1544,634,276,1571,647,1292,1116,229,1165,1635,1635,958,202,1578,3861,3234,2914,1609,3943,135,1978,1978,2812,3931,3530,3770,3770,2143,2812,2812,1025,1978,3234,1435,90,838,3175,1435,634,311,1435,1435,1435,1435,1435,1435,2937,2937,2937,2937,2937,621 diff --git a/conf/data/proteingym_v1/struc_seq/4096/NPC1_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/4096/NPC1_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..73b1d4e197030c86241dec034968f453afb7662b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/4096/NPC1_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_HEK293T 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