diff --git a/conf/data/proteingym_v1/struc_seq/1024/SBI_STAAM_Tsuboyama_2023_2JVG.fasta b/conf/data/proteingym_v1/struc_seq/1024/SBI_STAAM_Tsuboyama_2023_2JVG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..897fc25c028db00719ae15caae523ec3d6a902f3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SBI_STAAM_Tsuboyama_2023_2JVG.fasta @@ -0,0 +1,2 @@ +>SBI_STAAM_Tsuboyama_2023_2JVG +731,841,841,841,595,936,903,941,941,913,116,809,537,435,874,298,381,945,50,323,135,5,5,5,860,415,408,582,142,913,313,913,939,82,82,489,149,966,754,213,156,860,23,415,913,311,621,461,61,133,621,242,133,408,860,251 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SC6A4_HUMAN_Young_2021.fasta b/conf/data/proteingym_v1/struc_seq/1024/SC6A4_HUMAN_Young_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1a224a559b7dfd178603dcc255a8308d4b4dbdfa --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SC6A4_HUMAN_Young_2021.fasta @@ -0,0 +1,2 @@ +>SC6A4_HUMAN_Young_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/1024/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta b/conf/data/proteingym_v1/struc_seq/1024/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..780220ba706fc1059827689b368d72c61f13f4bb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta @@ -0,0 +1,2 @@ +>SCIN_STAAR_Tsuboyama_2023_2QFF +595,242,982,133,661,939,311,1011,435,142,963,116,21,306,23,142,334,306,964,964,298,646,354,467,249,783,249,628,587,257,646,828,416,116,461,963,621,116,1011,461,116,142,110,795,939,377,766,778,939,939,313,952,829,682,972,621,895,621,461,829,621,224,435,116,133,313,903,313,251,135 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SCN5A_HUMAN_Glazer_2019.fasta b/conf/data/proteingym_v1/struc_seq/1024/SCN5A_HUMAN_Glazer_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8b3d798119437ae1321a07cbfaa973618247a993 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SCN5A_HUMAN_Glazer_2019.fasta @@ -0,0 +1,2 @@ +>SCN5A_HUMAN_Glazer_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/1024/SDA_BACSU_Tsuboyama_2023_1PV0.fasta b/conf/data/proteingym_v1/struc_seq/1024/SDA_BACSU_Tsuboyama_2023_1PV0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3531c06b042362fdd070c045bc8d40da0dedc2b5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SDA_BACSU_Tsuboyama_2023_1PV0.fasta @@ -0,0 +1,2 @@ +>SDA_BACSU_Tsuboyama_2023_1PV0 +663,663,877,570,999,318,75,75,770,110,322,582,621,524,422,766,766,550,386,628,519,628,587,744,110,422,408,311,61,886,422,451,524,362,451,451,5,324,324,612,612,324,612,612 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SERC_HUMAN_Xie_2023.fasta b/conf/data/proteingym_v1/struc_seq/1024/SERC_HUMAN_Xie_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f1da0ba0e6f8e7988c51f5df2eeededdb4a8297c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SERC_HUMAN_Xie_2023.fasta @@ -0,0 +1,2 @@ +>SERC_HUMAN_Xie_2023 +470,470,470,470,926,278,739,721,793,655,857,656,432,575,619,279,905,553,595,270,973,972,44,524,524,115,115,640,615,640,640,640,640,344,640,640,640,640,859,369,86,86,946,449,1023,466,466,754,82,44,828,435,660,1011,537,116,903,874,964,10,74,195,141,688,260,866,14,724,713,388,579,69,69,596,596,564,624,388,165,776,814,907,381,913,959,1014,101,584,584,701,493,493,803,803,427,872,559,559,736,915,975,745,509,563,593,611,268,166,568,156,529,119,65,65,756,119,676,714,119,506,353,915,915,657,193,120,865,796,12,638,563,477,477,889,690,629,698,706,765,986,698,375,911,501,679,736,186,40,378,542,975,326,437,57,267,619,29,241,623,477,432,901,444,850,37,665,706,501,845,222,144,484,562,158,158,48,326,463,267,679,200,701,76,688,447,734,428,893,632,437,375,995,717,717,472,921,305,543,831,267,872,196,794,600,956,788,499,788,667,693,368,585,388,579,207,905,794,577,650,584,650,987,987,317,584,699,938,584,584,799,876,385,228,272,342,26,676,215,718,260,825,207,427,807,814,259,624,457,413,413,259,660,660,544,660,660,149,544,972,550,475,171,826,578,76,709,920,823,110,504,814,941,142,106,776,963,537,461,372,789,415,372,572,476,342,1,0,35,2,9,656,226,336,57,145,887,460,477,900,873,319,482,656,623,533,574,2,591,704,574,399,9,675,648,168,631,177,446,311,972,670,550,23,130,841,652,146,805,635,879,332,440,496,831,512,875,629,431,844,266,813,755,226,319,150,147,627,905,150,259,952,203,45,383,621,224,795,61,224,224,795,61,989,582,264,883,916,85,994,1010 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SHOC2_HUMAN_Kwon_2022.fasta b/conf/data/proteingym_v1/struc_seq/1024/SHOC2_HUMAN_Kwon_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..eca5ead4c459645883d7d9897c369efc9e1c4757 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SHOC2_HUMAN_Kwon_2022.fasta @@ -0,0 +1,2 @@ +>SHOC2_HUMAN_Kwon_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/1024/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta b/conf/data/proteingym_v1/struc_seq/1024/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta new file mode 100644 index 0000000000000000000000000000000000000000..eb5e673cb378272e32588675cb603e3d789012d8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta @@ -0,0 +1,2 @@ +>SOX30_HUMAN_Tsuboyama_2023_7JJK +426,151,881,315,544,660,106,65,106,461,524,976,809,582,510,510,524,50,68,5,128,128,249,519,754,156,744,75,860,770,322,621,621,61,989,828,242,130,75,75,287,75,5,754,770,770,61,972,972,972,972,315,315,133,716,553,315 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPA_STAAU_Tsuboyama_2023_1LP1.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPA_STAAU_Tsuboyama_2023_1LP1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..36093c758c8e5c9c051f2f208115258598b7998e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPA_STAAU_Tsuboyama_2023_1LP1.fasta @@ -0,0 +1,2 @@ +>SPA_STAAU_Tsuboyama_2023_1LP1 +962,466,981,903,415,415,964,294,661,661,828,190,682,981,994,488,842,337,488,337,570,744,770,952,313,311,435,10,23,524,964,524,362,451,206,206,510,964,21,334,964,661,537,61,116,65,989,972,488,337,107,363,363,743,892 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPG1_STRSG_Olson_2014.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPG1_STRSG_Olson_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..57e59c53d7ff5f9361c15d4b6d5ef1deb7a4e862 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPG1_STRSG_Olson_2014.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Olson_2014 +234,663,663,36,822,822,12,12,357,357,357,357,12,12,822,36,209,569,569,569,209,209,209,569,569,569,569,569,569,746,746,746,569,569,569,569,569,209,209,36,36,473,473,948,948,108,108,108,108,108,108,108,108,357,108,616,108,108,108,108,108,108,490,490,603,603,36,555,36,36,36,948,616,602,448,281,281,989,322,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,963,941,182,963,941,941,809,461,939,809,1011,435,142,311,886,489,324,606,7,514,7,652,386,916,377,913,44,203,778,190,586,82,488,49,489,586,203,939,939,182,621,435,621,182,833,461,224,972,408,963,182,224,828,989,989,989,281,894,894,894,989,582,44,281,766,766,44,587,281,281,281,869,869,894,828,441,941,1011,461,65,775,1011,461,913,142,809,537,142,311,422,313,5,894,999,466,636,916,5,744,377,939,203,939,778,190,488,489,488,544,833,203,489,242,939,408,461,537,408,989,270,75,287,287,107,958,857,654,654,223,223,517,540,220,649,802,406,280,522,522,406,692,220,885,368,732,732,420,154,503,165,287,494,425,46,182,595,568,441,976,550,673,263,386,329,271,276,276,409,947,838,452,988,37,971,1015,745,170,585,517,220,838,409,297,399,632,948,19,19,19,19,19,19,19,930,159,690,406,793,223,223,517,540,220,838,838,406,297,690,437,310,947,662,642,1018,988,742,296,958,442,268,287,725,425,46,182,703,568,441,976,475,673,386,550,329,363,276,429,409,947,838,452,540,1000,971,1015,211,463,585,517,220,838,41,297,437,632,473,473,473,473,36,822,569,569,209,209,209,240,209,822,817,817,307,153,409,90,90,90,351,90,965,887,845,865,817,12,12,817,822,822,822,209,746,746,569,569,569,746,569,569,569,569,569,569,569,569,569,569,569,569,569,746,569,209,209,209,36,822,240,822,822,36,948,948,473,113,108,108,689,689,357,603,603,603,36,569,569,569,36,36,473,948,948,108,473,473,473,36,569,569 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPG1_STRSG_Wu_2016.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPG1_STRSG_Wu_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..332329d23ffb21c32474e6fc7d962998f42f4401 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPG1_STRSG_Wu_2016.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Wu_2016 +234,663,663,36,822,822,12,12,357,357,357,357,12,12,822,36,209,569,569,569,209,209,209,569,569,569,569,569,569,746,746,746,569,569,569,569,569,209,209,36,36,473,473,948,948,108,108,108,108,108,108,108,108,357,108,616,108,108,108,108,108,108,490,490,603,603,36,555,36,36,36,948,616,602,448,281,281,989,322,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,963,941,182,963,941,941,809,461,939,809,1011,435,142,311,886,489,324,606,7,514,7,652,386,916,377,913,44,203,778,190,586,82,488,49,489,586,203,939,939,182,621,435,621,182,833,461,224,972,408,963,182,224,828,989,989,989,281,894,894,894,989,582,44,281,766,766,44,587,281,281,281,869,869,894,828,441,941,1011,461,65,775,1011,461,913,142,809,537,142,311,422,313,5,894,999,466,636,916,5,744,377,939,203,939,778,190,488,489,488,544,833,203,489,242,939,408,461,537,408,989,270,75,287,287,107,958,857,654,654,223,223,517,540,220,649,802,406,280,522,522,406,692,220,885,368,732,732,420,154,503,165,287,494,425,46,182,595,568,441,976,550,673,263,386,329,271,276,276,409,947,838,452,988,37,971,1015,745,170,585,517,220,838,409,297,399,632,948,19,19,19,19,19,19,19,930,159,690,406,793,223,223,517,540,220,838,838,406,297,690,437,310,947,662,642,1018,988,742,296,958,442,268,287,725,425,46,182,703,568,441,976,475,673,386,550,329,363,276,429,409,947,838,452,540,1000,971,1015,211,463,585,517,220,838,41,297,437,632,473,473,473,473,36,822,569,569,209,209,209,240,209,822,817,817,307,153,409,90,90,90,351,90,965,887,845,865,817,12,12,817,822,822,822,209,746,746,569,569,569,746,569,569,569,569,569,569,569,569,569,569,569,569,569,746,569,209,209,209,36,822,240,822,822,36,948,948,473,113,108,108,689,689,357,603,603,603,36,569,569,569,36,36,473,948,948,108,473,473,473,36,569,569 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0b2da1dfc63f5b5d8357075ab4868f3c70b0732f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta @@ -0,0 +1,2 @@ +>SPG2_STRSG_Tsuboyama_2023_5UBS +426,950,950,1018,838,843,220,838,41,730,555,297,297,957,220,885,669,154,436,459,245,571,847,287,62,921,425,219,744,568,595,976,550,631,386,550,386,263,847,429,41,41,452,452,540,1000,971,1015,429,745,170,517,220,838,41,947 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPIKE_SARS2_Starr_2020_binding.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPIKE_SARS2_Starr_2020_binding.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5617cc1365a2470e09ff049e00d3bf1cfdd25d88 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPIKE_SARS2_Starr_2020_binding.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_binding +746,746,746,569,209,36,36,473,473,948,357,580,926,926,319,121,495,399,399,310,409,409,307,947,909,299,940,773,977,481,541,431,81,513,523,507,41,406,927,280,822,139,279,889,319,889,336,752,762,530,390,762,541,626,541,541,482,747,440,747,541,977,246,246,940,17,626,608,181,214,781,781,845,845,214,3,169,181,720,774,41,720,960,977,541,626,181,608,541,977,301,335,693,189,125,839,478,478,752,752,481,740,1009,977,301,696,821,94,94,897,482,1005,698,844,906,767,696,644,515,773,608,527,478,214,502,275,515,515,637,515,502,906,749,185,512,336,889,787,52,802,161,649,521,216,58,148,104,1015,419,419,419,684,965,634,502,787,396,336,513,319,623,512,749,527,370,391,772,556,733,653,246,912,785,277,871,651,193,163,482,761,193,761,307,888,871,720,181,626,17,54,834,335,438,515,767,684,440,120,407,684,273,123,644,935,750,935,491,912,912,1009,450,871,871,947,909,414,153,409,409,409,90,41,112,452,549,515,772,556,273,684,684,120,997,610,740,300,977,681,681,6,418,161,787,521,521,965,58,37,307,808,798,987,690,121,399,193,94,328,917,626,626,917,541,974,834,681,491,940,762,977,626,917,747,747,164,667,136,481,747,316,57,279,889,623,169,692,720,979,694,694,227,970,905,248,305,891,866,620,658,199,227,840,127,165,165,361,100,356,296,737,720,686,296,164,100,600,956,35,944,944,747,787,121,4,52,52,787,406,336,241,911,911,563,310,712,326,921,260,261,261,658,780,535,998,706,226,533,507,169,755,406,409,752,576,548,414,304,678,112,513,513,328,463,11,402,455,735,455,449,476,19,352,360,94,897,131,533,890,39,917,214,928,433,866,85,424,145,498,627,477,432,450,917,785,6,304,335,678,681,53,368,558,150,421,806,907,780,1023,25,887,761,679,428,428,753,951,332,215,332,574,889,477,837,81,57,428,310,986,610,610,960,940,834,678,189,846,979,131,986,870,394,226,727,196,593,87,727,831,316,316,737,226,226,172,752,610,1005,307,471,574,81,697,697,409,81,563,986,865,163,690,0,1005,376,690,690,159,580,159,816,120,0,1005,120,120,120,961,120,120,889,997,185,997,785,857,492,831,493,147,727,984,727,346,956,496,799,147,493,979,762,678,693,693,335,438,481,917,917,444,460,460,837,432,336,513,432,1006,375,121,927,406,299,299,52,802,720,889,111,513,513,161,52,513,513,336,241,241,241,787,161,450,740,167,167,960,912,909,436,845,214,12,798,460,444,35,740,450,1005,753,765,765,765,174,243,450,167,1009,704,241,241,477,638,477,928,20,167,1009,1009,740,181,997,857,440,482,319,319,667,678,762,762,73,533,356,420,321,643,64,844,533,990,678,899,543,319,831,2,591,891,676,797,840,539,674,862,876,259,566,783,86,577,577,583,583,583,38,827,560,372,748,25,850,657,302,704,965,482,460,844,477,812,755,897,406,507,507,760,878,90,878,723,409,409,802,802,328,73,285,120,522,690,328,41,662,787,197,273,13,214,798,845,12,12,817,12,817,817,12,798,798,798,478,336,523,634,52,662,328,310,310,409,153,88,822,822,822,822,155,822,798,471,527,47,123,762,790,300,752,336,747,752,579,899,992,164,1019,576,992,564,624,937,1007,1007,319,150,694,457,457,876,338,504,650,504,486,49,105,385,385,287,190,778,652,989,206,674,44,448,206,362,362,510,589,44,524,674,149,219,795,778,318,1011,383,398,941,833,413,884,833,413,1007,902,778,778,392,504,1021,338,584,498,577,516,327,238,580,12,357,357,580,394,688,718,718,260,286,117,859,627,237,15,93,629,207,346,317,105,105,876,15,15,423,485,771,884,748,771,771,424,424,748,86,784,14,346,25,1000,792,382,78,260,552,476,323,552,261,261,801,535,476,801,783,933,827,519,508,259,55,157,504,876,937,29,302,752,808,944,748,840,570,748,814,383,776,374,338,105,338,794,876,338,970,852,588,581,286,179,588,15,447,286,286,980,303,412,412,215,0,344,806,15,676,639,489,859,489,775,639,101,106,711,876,228,30,676,751,110,32,676,110,524,362,976,381,606,7,84,711,920,248,907,867,703,480,480,224,595,408,61,989,44,415,415,281,908,508,933,797,907,298,565,361,264,973,231,770,408,224,883,408,219,224,621,621,61,829,674,322,415,902,385,1,259,504,584,55,55,369,105,337,424,898,784,784,140,784,994,130,135,770,744,883,383,939,973,264,413,795,952,383,829,795,795,660,829,182,61,829,61,61,537,939,61,224,829,537,182,972,795,61,972,413,939,833,468,413,525,65,937,707,674,84,937,411,852,35,485,980,672,267,43,727,727,174,961,344,396,704,169,737,619,35,485,319,790,596,596,543,564,564,147,493,543,543,438,1019,6,481,790,541,752,790,755,752,481,626,125,681,977,821,123,161,83,634,521,787,634,901,58,216,216,161,1009,704,20,697,610,83,181,1009,549,692,430,473,850,720,167,181,83,169,169,319,336,336,697,405,405,787,161,904,9,961,704,216,749,391,773,192,94,904,875,360,904,655,1006,904,838,657,878,562,657,314,129,820,703,894,894,306,42,42,42,42,42,306,114,114,114,114,362,362,448,249,78,113,764,817,209,746,209,822,822,12,357,357,108,108,948,948,948,948,520,602,587,894,894,306,306,42,42,42,42,42,42,42,42,976,916,754,382,162,764,822,209,822,36,36,36,36,36,12,12,12,12,473,357,898,898,281,894,894,989,306,42,42,42,42,182,182,182,182,182,182,182,182,182,182,182,989,168,916,281,382,235,113,764,36,209,209,240,240,240,209,36,569,569,569,569,209,569,209,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPIKE_SARS2_Starr_2020_expression.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPIKE_SARS2_Starr_2020_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f396e152ddb9b69e33991ac0e18fc5e5f3112a7a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPIKE_SARS2_Starr_2020_expression.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_expression +746,746,746,569,209,36,36,473,473,948,357,580,926,926,319,121,495,399,399,310,409,409,307,947,909,299,940,773,977,481,541,431,81,513,523,507,41,406,927,280,822,139,279,889,319,889,336,752,762,530,390,762,541,626,541,541,482,747,440,747,541,977,246,246,940,17,626,608,181,214,781,781,845,845,214,3,169,181,720,774,41,720,960,977,541,626,181,608,541,977,301,335,693,189,125,839,478,478,752,752,481,740,1009,977,301,696,821,94,94,897,482,1005,698,844,906,767,696,644,515,773,608,527,478,214,502,275,515,515,637,515,502,906,749,185,512,336,889,787,52,802,161,649,521,216,58,148,104,1015,419,419,419,684,965,634,502,787,396,336,513,319,623,512,749,527,370,391,772,556,733,653,246,912,785,277,871,651,193,163,482,761,193,761,307,888,871,720,181,626,17,54,834,335,438,515,767,684,440,120,407,684,273,123,644,935,750,935,491,912,912,1009,450,871,871,947,909,414,153,409,409,409,90,41,112,452,549,515,772,556,273,684,684,120,997,610,740,300,977,681,681,6,418,161,787,521,521,965,58,37,307,808,798,987,690,121,399,193,94,328,917,626,626,917,541,974,834,681,491,940,762,977,626,917,747,747,164,667,136,481,747,316,57,279,889,623,169,692,720,979,694,694,227,970,905,248,305,891,866,620,658,199,227,840,127,165,165,361,100,356,296,737,720,686,296,164,100,600,956,35,944,944,747,787,121,4,52,52,787,406,336,241,911,911,563,310,712,326,921,260,261,261,658,780,535,998,706,226,533,507,169,755,406,409,752,576,548,414,304,678,112,513,513,328,463,11,402,455,735,455,449,476,19,352,360,94,897,131,533,890,39,917,214,928,433,866,85,424,145,498,627,477,432,450,917,785,6,304,335,678,681,53,368,558,150,421,806,907,780,1023,25,887,761,679,428,428,753,951,332,215,332,574,889,477,837,81,57,428,310,986,610,610,960,940,834,678,189,846,979,131,986,870,394,226,727,196,593,87,727,831,316,316,737,226,226,172,752,610,1005,307,471,574,81,697,697,409,81,563,986,865,163,690,0,1005,376,690,690,159,580,159,816,120,0,1005,120,120,120,961,120,120,889,997,185,997,785,857,492,831,493,147,727,984,727,346,956,496,799,147,493,979,762,678,693,693,335,438,481,917,917,444,460,460,837,432,336,513,432,1006,375,121,927,406,299,299,52,802,720,889,111,513,513,161,52,513,513,336,241,241,241,787,161,450,740,167,167,960,912,909,436,845,214,12,798,460,444,35,740,450,1005,753,765,765,765,174,243,450,167,1009,704,241,241,477,638,477,928,20,167,1009,1009,740,181,997,857,440,482,319,319,667,678,762,762,73,533,356,420,321,643,64,844,533,990,678,899,543,319,831,2,591,891,676,797,840,539,674,862,876,259,566,783,86,577,577,583,583,583,38,827,560,372,748,25,850,657,302,704,965,482,460,844,477,812,755,897,406,507,507,760,878,90,878,723,409,409,802,802,328,73,285,120,522,690,328,41,662,787,197,273,13,214,798,845,12,12,817,12,817,817,12,798,798,798,478,336,523,634,52,662,328,310,310,409,153,88,822,822,822,822,155,822,798,471,527,47,123,762,790,300,752,336,747,752,579,899,992,164,1019,576,992,564,624,937,1007,1007,319,150,694,457,457,876,338,504,650,504,486,49,105,385,385,287,190,778,652,989,206,674,44,448,206,362,362,510,589,44,524,674,149,219,795,778,318,1011,383,398,941,833,413,884,833,413,1007,902,778,778,392,504,1021,338,584,498,577,516,327,238,580,12,357,357,580,394,688,718,718,260,286,117,859,627,237,15,93,629,207,346,317,105,105,876,15,15,423,485,771,884,748,771,771,424,424,748,86,784,14,346,25,1000,792,382,78,260,552,476,323,552,261,261,801,535,476,801,783,933,827,519,508,259,55,157,504,876,937,29,302,752,808,944,748,840,570,748,814,383,776,374,338,105,338,794,876,338,970,852,588,581,286,179,588,15,447,286,286,980,303,412,412,215,0,344,806,15,676,639,489,859,489,775,639,101,106,711,876,228,30,676,751,110,32,676,110,524,362,976,381,606,7,84,711,920,248,907,867,703,480,480,224,595,408,61,989,44,415,415,281,908,508,933,797,907,298,565,361,264,973,231,770,408,224,883,408,219,224,621,621,61,829,674,322,415,902,385,1,259,504,584,55,55,369,105,337,424,898,784,784,140,784,994,130,135,770,744,883,383,939,973,264,413,795,952,383,829,795,795,660,829,182,61,829,61,61,537,939,61,224,829,537,182,972,795,61,972,413,939,833,468,413,525,65,937,707,674,84,937,411,852,35,485,980,672,267,43,727,727,174,961,344,396,704,169,737,619,35,485,319,790,596,596,543,564,564,147,493,543,543,438,1019,6,481,790,541,752,790,755,752,481,626,125,681,977,821,123,161,83,634,521,787,634,901,58,216,216,161,1009,704,20,697,610,83,181,1009,549,692,430,473,850,720,167,181,83,169,169,319,336,336,697,405,405,787,161,904,9,961,704,216,749,391,773,192,94,904,875,360,904,655,1006,904,838,657,878,562,657,314,129,820,703,894,894,306,42,42,42,42,42,306,114,114,114,114,362,362,448,249,78,113,764,817,209,746,209,822,822,12,357,357,108,108,948,948,948,948,520,602,587,894,894,306,306,42,42,42,42,42,42,42,42,976,916,754,382,162,764,822,209,822,36,36,36,36,36,12,12,12,12,473,357,898,898,281,894,894,989,306,42,42,42,42,182,182,182,182,182,182,182,182,182,182,182,989,168,916,281,382,235,113,764,36,209,209,240,240,240,209,36,569,569,569,569,209,569,209,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta b/conf/data/proteingym_v1/struc_seq/1024/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d8e894911c244f5e4ce6b3a3a1fb3e89d9fb9025 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta @@ -0,0 +1,2 @@ +>SPTN1_CHICK_Tsuboyama_2023_1TUD +1016,613,414,726,726,277,39,858,370,370,818,772,772,651,651,240,240,240,901,471,515,89,370,370,450,355,968,968,871,888,343,81,81,887,774,774,947,83,968,968,968,83,167,89,696,644,977,742,846,59,214,291,420,296,39,175,246,719,613,405 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta b/conf/data/proteingym_v1/struc_seq/1024/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e41440662d21df4c974d72f9f854322af297f249 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta @@ -0,0 +1,2 @@ +>SQSTM_MOUSE_Tsuboyama_2023_2RRU +28,257,536,982,242,936,916,23,860,44,916,916,916,916,128,128,535,261,754,448,526,298,510,377,886,21,524,451,257,242,156,21,23,860,156,867,251,313,313,251 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SR43C_ARATH_Tsuboyama_2023_2N88.fasta b/conf/data/proteingym_v1/struc_seq/1024/SR43C_ARATH_Tsuboyama_2023_2N88.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4c8b4fe67453f22252764fa444ed31e7deb33b14 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SR43C_ARATH_Tsuboyama_2023_2N88.fasta @@ -0,0 +1,2 @@ +>SR43C_ARATH_Tsuboyama_2023_2N88 +426,3,871,3,906,239,239,391,772,275,192,39,419,419,419,419,321,39,502,275,391,608,608,243,214,845,426,845,214,405,391,773,122,772,39,781,291,605,177,744,611,685,685,75,494,648,854,251 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta b/conf/data/proteingym_v1/struc_seq/1024/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7cf8900909eb9aeb8d04f62cfd9d9c2ccd7e643c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta @@ -0,0 +1,2 @@ +>SRBS1_HUMAN_Tsuboyama_2023_2O2W +962,64,560,139,889,370,370,644,89,749,450,450,968,968,968,692,124,845,307,307,124,549,871,871,181,968,968,450,968,123,89,89,89,773,821,502,742,214,928,499,192,20,821,515,772,471,471,180,339,339,471,549,821,821,742,192,39,574,1009,275,126,275,696,123,785,370,889 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Ahler_2019.fasta b/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Ahler_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f31a11a6fe1892ff48498b2354b256884f7d6140 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Ahler_2019.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Ahler_2019 +569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,746,746,209,209,209,240,817,817,490,817,12,12,580,1005,122,899,126,704,812,968,450,968,871,947,522,690,888,871,720,692,871,450,968,968,704,813,122,899,122,89,275,742,430,59,753,464,291,345,574,821,122,749,772,122,858,858,882,3,20,391,608,418,94,273,1005,370,126,499,846,39,360,683,346,346,356,607,394,211,585,984,540,760,222,129,807,883,867,891,388,881,498,51,543,427,207,346,679,163,704,396,336,755,492,112,965,965,742,360,291,858,180,343,742,112,112,990,438,481,370,370,858,255,643,643,573,573,430,370,749,481,846,752,767,899,275,275,126,288,16,120,239,858,273,654,503,958,958,845,781,92,92,80,601,546,999,601,771,611,410,666,840,260,615,244,96,584,147,901,332,237,186,432,697,241,477,477,944,927,796,690,440,460,477,121,737,737,533,310,310,501,399,961,25,430,16,16,221,906,391,391,720,391,405,405,608,450,1005,185,608,608,515,391,549,89,749,818,698,812,522,793,704,167,772,644,644,122,192,875,928,987,496,483,427,881,883,231,680,480,42,828,867,828,828,449,721,800,498,938,498,563,786,560,704,563,396,755,755,221,979,165,361,159,987,499,175,551,364,123,549,167,83,121,371,591,103,956,799,584,588,978,514,526,735,735,978,946,930,933,636,337,156,156,778,945,903,497,895,10,639,937,435,529,567,283,913,566,814,936,524,50,751,400,199,199,905,607,876,876,876,33,1005,656,837,87,193,844,938,398,493,485,656,600,512,345,60,546,861,427,427,483,369,427,427,346,346,1002,1002,672,554,134,1002,650,43,554,584,978,584,105,259,157,411,303,840,862,862,797,303,38,60,199,814,776,259,374,1007,157,392,708,983,814,544,778,748,259,660,454,842,137,85,337,337,369,629,490,877,363,337,86,337,566,337,514,110,329,514,146,263,700,1010,800,938,725,363,363,629,56,318,546,999,883,203,586,313,964,945,700,708,49,140,55,264,994,978,86,938,55,140,778,116,242,313,682,461,21,964,964,964,257,257,195,108,113,357,12,865,399,887,958,145,944,842,151,554 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta b/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cdd45d2eeead96106b724e7c35a9dead56280edb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM +569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,746,746,209,209,209,240,817,817,490,817,12,12,580,1005,122,899,126,704,812,968,450,968,871,947,522,690,888,871,720,692,871,450,968,968,704,813,122,899,122,89,275,742,430,59,753,464,291,345,574,821,122,749,772,122,858,858,882,3,20,391,608,418,94,273,1005,370,126,499,846,39,360,683,346,346,356,607,394,211,585,984,540,760,222,129,807,883,867,891,388,881,498,51,543,427,207,346,679,163,704,396,336,755,492,112,965,965,742,360,291,858,180,343,742,112,112,990,438,481,370,370,858,255,643,643,573,573,430,370,749,481,846,752,767,899,275,275,126,288,16,120,239,858,273,654,503,958,958,845,781,92,92,80,601,546,999,601,771,611,410,666,840,260,615,244,96,584,147,901,332,237,186,432,697,241,477,477,944,927,796,690,440,460,477,121,737,737,533,310,310,501,399,961,25,430,16,16,221,906,391,391,720,391,405,405,608,450,1005,185,608,608,515,391,549,89,749,818,698,812,522,793,704,167,772,644,644,122,192,875,928,987,496,483,427,881,883,231,680,480,42,828,867,828,828,449,721,800,498,938,498,563,786,560,704,563,396,755,755,221,979,165,361,159,987,499,175,551,364,123,549,167,83,121,371,591,103,956,799,584,588,978,514,526,735,735,978,946,930,933,636,337,156,156,778,945,903,497,895,10,639,937,435,529,567,283,913,566,814,936,524,50,751,400,199,199,905,607,876,876,876,33,1005,656,837,87,193,844,938,398,493,485,656,600,512,345,60,546,861,427,427,483,369,427,427,346,346,1002,1002,672,554,134,1002,650,43,554,584,978,584,105,259,157,411,303,840,862,862,797,303,38,60,199,814,776,259,374,1007,157,392,708,983,814,544,778,748,259,660,454,842,137,85,337,337,369,629,490,877,363,337,86,337,566,337,514,110,329,514,146,263,700,1010,800,938,725,363,363,629,56,318,546,999,883,203,586,313,964,945,700,708,49,140,55,264,994,978,86,938,55,140,778,116,242,313,682,461,21,964,964,964,257,257,195,108,113,357,12,865,399,887,958,145,944,842,151,554 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Nguyen_2022.fasta b/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Nguyen_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..48d314ffaaa3ff307101d7828fffc7435b1e2abc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SRC_HUMAN_Nguyen_2022.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Nguyen_2022 +569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,746,746,209,209,209,240,817,817,490,817,12,12,580,1005,122,899,126,704,812,968,450,968,871,947,522,690,888,871,720,692,871,450,968,968,704,813,122,899,122,89,275,742,430,59,753,464,291,345,574,821,122,749,772,122,858,858,882,3,20,391,608,418,94,273,1005,370,126,499,846,39,360,683,346,346,356,607,394,211,585,984,540,760,222,129,807,883,867,891,388,881,498,51,543,427,207,346,679,163,704,396,336,755,492,112,965,965,742,360,291,858,180,343,742,112,112,990,438,481,370,370,858,255,643,643,573,573,430,370,749,481,846,752,767,899,275,275,126,288,16,120,239,858,273,654,503,958,958,845,781,92,92,80,601,546,999,601,771,611,410,666,840,260,615,244,96,584,147,901,332,237,186,432,697,241,477,477,944,927,796,690,440,460,477,121,737,737,533,310,310,501,399,961,25,430,16,16,221,906,391,391,720,391,405,405,608,450,1005,185,608,608,515,391,549,89,749,818,698,812,522,793,704,167,772,644,644,122,192,875,928,987,496,483,427,881,883,231,680,480,42,828,867,828,828,449,721,800,498,938,498,563,786,560,704,563,396,755,755,221,979,165,361,159,987,499,175,551,364,123,549,167,83,121,371,591,103,956,799,584,588,978,514,526,735,735,978,946,930,933,636,337,156,156,778,945,903,497,895,10,639,937,435,529,567,283,913,566,814,936,524,50,751,400,199,199,905,607,876,876,876,33,1005,656,837,87,193,844,938,398,493,485,656,600,512,345,60,546,861,427,427,483,369,427,427,346,346,1002,1002,672,554,134,1002,650,43,554,584,978,584,105,259,157,411,303,840,862,862,797,303,38,60,199,814,776,259,374,1007,157,392,708,983,814,544,778,748,259,660,454,842,137,85,337,337,369,629,490,877,363,337,86,337,566,337,514,110,329,514,146,263,700,1010,800,938,725,363,363,629,56,318,546,999,883,203,586,313,964,945,700,708,49,140,55,264,994,978,86,938,55,140,778,116,242,313,682,461,21,964,964,964,257,257,195,108,113,357,12,865,399,887,958,145,944,842,151,554 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SUMO1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/1024/SUMO1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bd5c30f0b70b668f0788ab572aa5142e23446a55 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SUMO1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>SUMO1_HUMAN_Weile_2017 +663,746,209,822,36,12,12,473,930,357,12,822,12,12,357,12,357,180,180,111,610,697,52,52,27,521,220,368,351,501,657,1000,838,965,220,122,216,273,1005,371,440,179,806,806,676,32,648,358,298,23,74,475,652,550,205,386,205,652,676,464,765,560,897,112,112,649,120,547,547,277,560,1005,553,698,272,179,645,215,640,880,77,1006,212,4,52,1004,521,521,521,368,368,356,356,16,207,948,948,473,473,473,357 diff --git a/conf/data/proteingym_v1/struc_seq/1024/SYUA_HUMAN_Newberry_2020.fasta b/conf/data/proteingym_v1/struc_seq/1024/SYUA_HUMAN_Newberry_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5e567091c06e8511ce27f0904a6adf11b81408b1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/SYUA_HUMAN_Newberry_2020.fasta @@ -0,0 +1,2 @@ +>SYUA_HUMAN_Newberry_2020 +731,731,731,133,133,133,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,42,306,306,976,587,115,466,466,622,108,108,622,466,754,281,894,976,306,306,182,182,182,182,182,182,182,42,182,182,42,42,42,42,42,42,42,42,42,42,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,182,306,976,976,362,754,323,466,535,357,12,357,12,817,12,12,12,12,12,12,822,209,209,746,822,822,822,817,817,12,357,490,357,108,108,357,357,357,490,357,357,108,357,357,108,108,948,357,12,357,357,357,822,822 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TADBP_HUMAN_Bolognesi_2019.fasta b/conf/data/proteingym_v1/struc_seq/1024/TADBP_HUMAN_Bolognesi_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dd673e1ca63920e1550c7c64c9d3d96cc44b3d52 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TADBP_HUMAN_Bolognesi_2019.fasta @@ -0,0 +1,2 @@ +>TADBP_HUMAN_Bolognesi_2019 +243,214,608,181,740,787,634,965,887,297,657,12,280,214,406,965,634,275,243,997,752,1005,844,478,887,51,29,658,397,127,210,998,783,724,127,771,96,215,179,370,634,935,935,502,273,695,1015,419,419,288,592,726,912,912,871,20,243,120,713,818,239,813,812,444,765,225,163,81,81,81,904,634,364,364,787,704,460,0,1012,930,946,946,12,817,822,209,569,569,209,240,490,817,490,490,357,689,616,616,616,63,1012,706,56,277,175,762,331,331,331,136,277,928,482,440,56,210,459,494,171,388,80,441,763,991,611,263,469,784,394,442,20,772,1019,530,762,1005,875,765,882,1015,1015,765,483,1005,997,527,785,6,597,184,897,503,460,905,861,315,199,564,807,881,907,388,79,1000,726,818,742,818,522,1020,547,742,53,331,667,131,897,726,900,440,690,690,99,603,490,490,603,690,944,900,900,172,979,331,331,331,221,684,798,163,1002,629,462,459,494,171,388,80,130,763,991,385,508,670,369,215,873,813,164,1019,530,857,343,632,923,16,0,163,785,221,974,576,172,564,440,147,794,337,215,543,891,709,891,893,961,818,370,818,13,713,698,407,13,13,726,576,667,131,131,839,865,632,108,19,19,616,616,616,689,603,555,555,569,569,209,209,209,209,569,36,569,569,569,569,569,746,746,746,746,569,569,569,746,746,209,746,746,746,209,746,209,746,746,209,209,569,569,746,209,209,209,209,822,36,36,473,473,19,19,19,602,602,602,602,602,602,602,622,622,622,357,490,603,209,209,569,209,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,746,746,569,569,569,569,569,569,569,569,569,569,569,746,569,209,209,209,569,569,569,569,746,746,746,569,569,569,569,746,746,746,746,746,746,746,746,746,746,569,569,569,569,569,569,569,569,569,746,209,569,746,746,746,746,746,746,746 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TAT_HV1BR_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/1024/TAT_HV1BR_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..858226c80bf1f9ee129aed1354290715b0aec862 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TAT_HV1BR_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>TAT_HV1BR_Fernandes_2016 +139,426,470,180,180,180,683,683,108,683,113,113,346,683,180,426,426,139,808,927,927,938,359,151,554,825,449,797,825,825,825,385,505,56,14,303,303,666,1003,797,797,666,1003,1003,1003,380,580,12,357,12,490,490,12,490,817,817,817,817,817,817,240,817,473,473,473,948,616,19,948,948,357,357,357,357,948,948,108,108,948,473,473,36,36,209,746,746 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta b/conf/data/proteingym_v1/struc_seq/1024/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ca7e706465c8ad09ff02e326f398a99226f70b61 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta @@ -0,0 +1,2 @@ +>TCRG1_MOUSE_Tsuboyama_2023_1E0L +962,505,700,498,498,584,873,172,126,772,122,1017,1017,288,419,288,120,654,391,275,749,35,103,93,695,695,858,502,772,772,781,148,897,938,584,498,842 diff --git a/conf/data/proteingym_v1/struc_seq/1024/THO1_YEAST_Tsuboyama_2023_2WQG.fasta b/conf/data/proteingym_v1/struc_seq/1024/THO1_YEAST_Tsuboyama_2023_2WQG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..affb6375d595d6ecb077ffad2816ea18fd655453 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/THO1_YEAST_Tsuboyama_2023_2WQG.fasta @@ -0,0 +1,2 @@ +>THO1_YEAST_Tsuboyama_2023_2WQG +779,636,249,566,236,699,171,636,203,75,75,242,936,110,886,652,386,550,465,386,519,14,810,706,235,135,488,203,135,489,952,828,972,972,290,133,290,614,614,251,251 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta b/conf/data/proteingym_v1/struc_seq/1024/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bc69ac738866327918aad697ac13bab4a09bdb6e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta @@ -0,0 +1,2 @@ +>TNKS2_HUMAN_Tsuboyama_2023_5JRT +152,177,446,32,883,707,674,451,589,674,298,206,451,68,908,451,114,908,589,115,451,50,128,652,446,410,784,572,810,454,784,823,959,920,26,476,566,194,362,298,908,377,44,323,766,281,952,766,766,582,668,589,828,939,82,860,251,939,883 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TPK1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/1024/TPK1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..92b57c9ac2a294e7dedc1131ac783c7fdbf4fc3b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TPK1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>TPK1_HUMAN_Weile_2017 +158,642,642,247,562,109,988,87,346,739,105,946,842,706,580,865,144,915,176,102,542,373,393,506,970,79,79,847,949,854,454,881,519,981,688,353,546,863,91,599,599,365,804,393,265,863,1014,506,863,45,714,721,589,959,615,26,26,628,249,959,260,1010,583,202,835,484,835,91,265,739,143,671,554,718,45,959,572,446,408,469,386,972,714,46,386,146,714,34,835,132,132,975,863,104,629,706,235,784,137,1014,458,833,567,439,456,941,741,439,469,524,550,46,5,976,5,349,340,1006,484,378,378,561,373,230,247,745,166,949,724,706,783,783,744,966,135,652,257,756,480,582,886,680,480,886,700,1010,308,952,748,353,212,853,160,52,247,220,297,297,720,613,738,974,719,705,6,704,167,802,507,642,557,472,463,356,207,455,905,56,527,608,181,977,977,910,597,301,551,131,360,193,887,704,370,608,418,17,974,726,499,289,192,192,551,197,871,181,83,704,533,742,360,850,547,436,289,47,391,773,275,275,527,291,987,496,987,656,897,187,738,507,704,83,610,533,481,667,678,834,977,541,641,906,605 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TPMT_HUMAN_Matreyek_2018.fasta b/conf/data/proteingym_v1/struc_seq/1024/TPMT_HUMAN_Matreyek_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ace0d491ba214a9ee218dbffd18db4d8c6f4f79e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TPMT_HUMAN_Matreyek_2018.fasta @@ -0,0 +1,2 @@ +>TPMT_HUMAN_Matreyek_2018 +234,569,569,569,209,555,603,473,473,923,108,346,683,699,699,607,455,801,554,577,554,151,938,706,494,721,936,916,85,257,298,324,606,646,362,68,448,783,535,699,699,225,722,25,999,625,128,459,74,5,5,976,362,630,630,402,819,78,412,314,144,484,534,378,373,561,542,975,144,864,202,709,718,1013,631,348,1001,631,34,34,213,1008,925,811,995,599,538,102,212,320,710,884,970,639,411,434,372,589,118,100,329,118,467,263,80,387,239,644,637,556,192,192,690,207,713,877,180,350,502,112,112,364,216,275,376,563,934,160,27,517,649,58,655,43,34,257,347,577,264,455,825,650,664,961,144,691,4,538,230,542,540,353,984,109,607,986,394,748,498,498,14,711,354,524,874,190,524,142,582,714,254,673,314,484,911,802,838,521,843,843,885,368,368,887,414,767,533,356,870,143,600,191,56,944,151,665,394,394,970,321,445,659,797,578,78,589,298,372,74,658,818,641,641,641,491,491,834,548,390,390,719,719,732,433,898,754,725,162,763,454,228,442,503,1017,17,719,919,390,719,834,669,750,750,912,122 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TPOR_HUMAN_Bridgford_2020.fasta b/conf/data/proteingym_v1/struc_seq/1024/TPOR_HUMAN_Bridgford_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8ebb580afb5fb7b700a53348962c78ddb432e25d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TPOR_HUMAN_Bridgford_2020.fasta @@ -0,0 +1,2 @@ +>TPOR_HUMAN_Bridgford_2020 +663,663,663,822,12,357,108,108,108,19,19,19,19,19,19,19,108,948,108,580,436,359,459,801,249,38,30,249,628,771,210,628,520,235,108,70,901,957,818,112,1018,1018,853,971,278,151,560,897,390,834,597,53,686,947,947,947,774,360,817,240,360,713,148,122,637,335,54,390,390,651,339,555,555,890,67,912,772,912,772,17,390,47,197,277,343,120,406,888,774,935,229,597,548,390,897,289,356,938,159,796,944,944,793,889,444,20,940,54,54,637,548,184,273,29,93,695,695,148,726,726,47,548,890,491,289,737,755,241,241,328,4,911,328,52,481,53,626,471,940,890,229,885,481,481,125,523,121,169,73,686,53,54,597,772,654,131,619,276,827,476,427,891,272,464,29,499,551,54,335,54,491,390,289,846,781,948,948,473,632,632,603,850,390,47,548,548,548,551,94,499,25,16,846,291,857,64,346,346,108,357,357,473,12,817,209,209,209,746,569,209,209,555,555,209,209,209,209,209,209,569,569,569,569,569,569,569,746,822,36,12,357,948,19,19,19,346,159,857,899,530,732,414,125,774,871,181,610,697,697,83,785,597,24,834,597,597,719,839,686,737,148,482,765,956,493,831,484,1006,686,507,977,246,613,17,597,890,919,885,481,161,513,463,9,737,593,1006,58,154,732,790,507,760,285,297,745,844,654,47,53,719,335,597,1019,277,277,277,193,909,742,686,719,301,696,246,246,17,17,541,94,471,12,12,845,845,580,798,12,817,927,957,613,613,405,17,613,758,1017,781,357,357,357,357,357,357,357,632,798,901,39,390,719,597,719,613,613,551,527,926,94,917,626,940,644,331,750,738,597,597,551,39,255,255,547,547,548,167,6,990,285,839,125,613,960,277,755,241,563,328,4,878,328,41,686,17,758,67,733,229,390,785,136,889,1005,610,785,123,637,910,515,67,592,560,846,629,622,520,440,944,900,482,172,767,551,54,335,54,719,390,390,974,798,436,817,258,890,890,229,597,246,681,125,997,226,917,626,940,696,733,910,527,790,450,316,610,181,785,551,597,597,733,491,890,414,686,396,752,336,844,837,831,697,802,878,452,885,935,597,613,912,733,890,719,597,523,968,610,591,675,295,44,894,894,306,306,306,182,182,182,182,182,182,182,182,182,182,182,182,182,182,306,306,306,306,306,306,306,306,306,306,306,306,306,322,976,115,115,115,630,78,78,330,473,622,898,281,281,281,281,322,322,322,182,182,322,744,614,168,168,62,759,36,569,569,569,569,569,569,569,569,569,209,209,209,209,209,209,209,209,209,209,209,209,209,209,209,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,569,36,36,209,36,569,209,240,569,569,569,569,569,569,569,569,569,569,569,36,473,357,357,108,948,948,12,357,12,473,603,36,569,36,603,88,651,136,960,940,471,943,482 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TRPC_SACS2_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/1024/TRPC_SACS2_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2648a2cedbf5da16a2912cd4b259c06a5ae72344 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TRPC_SACS2_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_SACS2_Chan_2017 +654,442,430,154,685,725,168,318,318,494,168,318,771,290,135,268,854,62,25,743,454,970,121,638,1006,734,278,679,911,911,1006,811,474,208,867,469,417,497,941,141,1001,550,386,263,991,485,208,91,561,954,18,211,406,336,355,355,87,695,573,713,1005,901,1000,743,268,454,936,936,195,34,410,213,714,856,402,196,835,474,835,176,403,804,904,353,111,95,237,267,111,355,57,314,1014,639,250,202,141,708,590,734,647,146,805,429,734,736,176,561,233,403,975,509,509,268,107,383,800,268,45,76,76,701,925,215,884,734,617,484,835,367,102,954,745,166,944,944,958,553,315,98,648,84,7,156,315,714,652,652,756,631,205,756,293,34,819,835,728,599,102,48,671,45,446,135,741,119,75,354,45,771,606,257,141,320,836,835,367,453,233,975,95,95,332,199,1015,272,1015,695,713,179,648,290,248,276,775,936,583,1014,700,636,993,272,870,563,253,617,176,561,18,188,37,437,104,268,583,318,595,135,1008,110,408,518,841,916,156,1014,208,830,91,365,403,18,351,37,340,635,79,325,115,324,510,467,666,50,329,327,485,100 diff --git a/conf/data/proteingym_v1/struc_seq/1024/TRPC_THEMA_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/1024/TRPC_THEMA_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ed787814327a505584721dbad329b8087f676bca --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/TRPC_THEMA_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_THEMA_Chan_2017 +28,231,566,566,110,614,171,883,42,408,135,614,989,636,994,130,287,952,455,881,842,56,228,794,794,493,493,267,856,366,925,484,72,771,516,617,739,679,432,482,147,278,40,534,561,954,954,975,241,837,837,837,873,987,376,376,376,179,698,638,923,86,1013,488,945,883,195,714,118,381,710,434,578,315,710,484,534,367,403,233,375,11,95,196,215,33,837,837,57,340,1014,639,283,1014,775,256,252,398,566,936,45,353,710,348,599,728,233,102,975,509,721,268,354,778,488,140,76,826,259,701,627,374,259,710,208,617,599,367,102,954,975,721,721,748,398,959,959,146,748,45,841,354,756,434,32,110,714,366,248,237,320,34,348,835,561,367,102,863,879,635,318,318,268,635,354,959,1014,146,966,966,784,276,911,911,484,728,453,132,975,95,638,900,876,228,799,369,464,695,179,620,475,244,293,886,908,329,577,783,754,166,870,113,563,745,736,534,561,102,18,745,745,104,722,1021,609,528,996,1014,810,333,794,794,215,794,40,484,534,102,403,954,975,745,117,268,117,980,118,476,636,156,674,203,933,157,939,269,826,338,416,814,22,374 diff --git a/conf/data/proteingym_v1/struc_seq/1024/UBC9_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/1024/UBC9_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..99c0ebad05df2c134930d24c66fc3625600c4154 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/UBC9_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>UBC9_HUMAN_Weile_2017 +881,881,867,883,881,936,963,941,941,963,219,963,867,322,446,648,168,744,568,877,1000,88,436,221,438,1019,732,767,742,444,1005,288,882,288,882,255,1005,266,319,549,696,637,910,644,1019,396,2,727,765,346,584,823,76,627,638,600,812,790,696,644,910,438,89,172,713,771,363,771,629,607,986,332,29,696,391,122,772,122,574,239,656,577,15,806,638,837,316,355,57,35,370,812,35,215,870,870,986,761,638,638,923,932,215,870,1002,1002,244,171,851,325,636,751,395,446,219,920,673,465,127,327,327,628,244,816,272,944,690,794,93,591,545,716,583,327,118,467,118,707,115,115,115,362,976,606,606,61,983,283,983,983,826,76,76,271,145,638,371,796,209 diff --git a/conf/data/proteingym_v1/struc_seq/1024/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta b/conf/data/proteingym_v1/struc_seq/1024/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a0c0f0f69ade0f9ff7751cd26e429a45f0a7c0e2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta @@ -0,0 +1,2 @@ +>UBE4B_HUMAN_Tsuboyama_2023_3L1X +139,179,56,713,440,33,376,2,344,675,57,376,57,344,2,237,564,788,788,273,273,185,695,288,0,953,103,266,788,568,625,601,519,322,754,295,628,128,127,464,464,464,640,675,765,0,464,344,464,675,676,764,858,897,788,126,992,395,290,680,372,422,311,98,770,133,595,770,251 diff --git a/conf/data/proteingym_v1/struc_seq/1024/UBE4B_MOUSE_Starita_2013.fasta b/conf/data/proteingym_v1/struc_seq/1024/UBE4B_MOUSE_Starita_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bc5410f60df5003a896b63652a9c0e95413daa31 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/UBE4B_MOUSE_Starita_2013.fasta @@ -0,0 +1,2 @@ +>UBE4B_MOUSE_Starita_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/1024/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta b/conf/data/proteingym_v1/struc_seq/1024/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9d02e577280634f6627576bd505210d39689e5b9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta @@ -0,0 +1,2 @@ +>UBR5_HUMAN_Tsuboyama_2023_1I2T +731,536,982,731,661,142,809,1011,116,524,606,269,668,606,298,606,606,298,324,298,298,606,582,886,21,952,582,778,82,981,636,636,586,744,789,945,883,23,582,10,23,894,23,894,828,21,524,42,61,621,582,61,313,313,133,408,982,251 diff --git a/conf/data/proteingym_v1/struc_seq/1024/VG08_BPP22_Tsuboyama_2023_2GP8.fasta b/conf/data/proteingym_v1/struc_seq/1024/VG08_BPP22_Tsuboyama_2023_2GP8.fasta new file mode 100644 index 0000000000000000000000000000000000000000..58dda54edfc60774a9b11cdae79b4124d19ba768 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/VG08_BPP22_Tsuboyama_2023_2GP8.fasta @@ -0,0 +1,2 @@ +>VG08_BPP22_Tsuboyama_2023_2GP8 +614,614,614,133,133,982,182,182,809,1011,809,809,537,1011,809,1011,334,524,524,451,451,451,451,976,451,451,976,451,334,23,311,621,537,182,313,294,408,133,242,130 diff --git a/conf/data/proteingym_v1/struc_seq/1024/VILI_CHICK_Tsuboyama_2023_1YU5.fasta b/conf/data/proteingym_v1/struc_seq/1024/VILI_CHICK_Tsuboyama_2023_1YU5.fasta new file mode 100644 index 0000000000000000000000000000000000000000..12f542882f04d6173984d832c78a0c31a4d39eff --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/VILI_CHICK_Tsuboyama_2023_1YU5.fasta @@ -0,0 +1,2 @@ +>VILI_CHICK_Tsuboyama_2023_1YU5 +495,495,495,284,276,238,447,827,1002,734,286,627,627,629,706,877,394,159,394,113,865,870,570,86,303,303,734,647,117,284,511,327,248,295,511,385,295,295,504,82,386,763,290,763,898,622,784,449,994,883,636,636,744,883,883,595,550,7,149,920,465,504,884,884,884 diff --git a/conf/data/proteingym_v1/struc_seq/1024/VKOR1_HUMAN_Chiasson_2020_abundance.fasta b/conf/data/proteingym_v1/struc_seq/1024/VKOR1_HUMAN_Chiasson_2020_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2f2b2869dc34c8f9ab4d27f16af33b080f4df07e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/VKOR1_HUMAN_Chiasson_2020_abundance.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_abundance +470,12,706,706,994,622,602,44,377,281,270,795,142,1011,661,829,537,142,661,435,461,661,795,621,142,682,1011,963,489,526,941,519,50,323,5,128,38,349,783,825,978,799,727,163,163,180,399,679,43,607,577,584,143,511,333,526,508,508,385,980,859,859,504,385,768,615,666,768,768,735,735,244,134,825,930,244,244,369,504,504,775,7,952,116,795,61,895,661,621,435,682,142,1011,789,173,82,981,82,130,130,130,130,242,537,142,661,621,1011,116,461,621,537,142,61,311,435,537,809,224,674,652,362,539,659,1003,612,612,397,434,827,771,673,568,489,778,313,537,895,537,829,435,435,61,435,682,621,621,795,461,886,415,415,952,281,602,602,19,108,108,108,113,113,12 diff --git a/conf/data/proteingym_v1/struc_seq/1024/VKOR1_HUMAN_Chiasson_2020_activity.fasta b/conf/data/proteingym_v1/struc_seq/1024/VKOR1_HUMAN_Chiasson_2020_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..eed797df3bafef7539894e4508924ec28892c206 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/VKOR1_HUMAN_Chiasson_2020_activity.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_activity +470,12,706,706,994,622,602,44,377,281,270,795,142,1011,661,829,537,142,661,435,461,661,795,621,142,682,1011,963,489,526,941,519,50,323,5,128,38,349,783,825,978,799,727,163,163,180,399,679,43,607,577,584,143,511,333,526,508,508,385,980,859,859,504,385,768,615,666,768,768,735,735,244,134,825,930,244,244,369,504,504,775,7,952,116,795,61,895,661,621,435,682,142,1011,789,173,82,981,82,130,130,130,130,242,537,142,661,621,1011,116,461,621,537,142,61,311,435,537,809,224,674,652,362,539,659,1003,612,612,397,434,827,771,673,568,489,778,313,537,895,537,829,435,435,61,435,682,621,621,795,461,886,415,415,952,281,602,602,19,108,108,108,113,113,12 diff --git a/conf/data/proteingym_v1/struc_seq/1024/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta b/conf/data/proteingym_v1/struc_seq/1024/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b67c0b68f49b6b42cbc610c90bf0ae221a107a2c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta @@ -0,0 +1,2 @@ +>VRPI_BPT7_Tsuboyama_2023_2WNM +948,948,948,16,345,858,273,527,749,122,767,637,122,275,39,901,573,436,556,637,67,637,122,899,273,924,605,92,296,177,494,387,601,670,318,420,918,475,263,80,80,263,295,388,387,388,387,122,912,1019,184,726,548,214,798,12 diff --git a/conf/data/proteingym_v1/struc_seq/1024/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta b/conf/data/proteingym_v1/struc_seq/1024/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e903fb4cb18358cbbe50a42a3bd1224fc83d4d6a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta @@ -0,0 +1,2 @@ +>YAIA_ECOLI_Tsuboyama_2023_2KVT +234,943,197,387,992,184,301,548,910,653,653,258,258,258,555,258,651,692,549,696,732,1019,1019,370,126,858,858,99,932,120,684,185,502,273,47,726,69,131,780,69,999,494,780,445,219,395,601,595,290,601,459,854 diff --git a/conf/data/proteingym_v1/struc_seq/1024/YAP1_HUMAN_Araya_2012.fasta b/conf/data/proteingym_v1/struc_seq/1024/YAP1_HUMAN_Araya_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c0fae0fad5be3a9cf1fa330bbc0abeb65f126e11 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/YAP1_HUMAN_Araya_2012.fasta @@ -0,0 +1,2 @@ +>YAP1_HUMAN_Araya_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/1024/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta b/conf/data/proteingym_v1/struc_seq/1024/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d099119de07736cbeb0767a8ad550a99d805973f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/1024/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta @@ -0,0 +1,2 @@ +>YNZC_BACSU_Tsuboyama_2023_2JVD +571,384,152,152,744,156,313,133,334,537,311,963,524,1011,422,110,652,451,451,128,50,652,652,999,75,298,110,133,621,537,61,224,621,242,133,28,28,854,854 diff --git a/conf/data/proteingym_v1/struc_seq/128/A0A140D2T1_ZIKV_Sourisseau_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/A0A140D2T1_ZIKV_Sourisseau_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..036a19e4718ae8de5ca666a6095c015e7dd6fcb7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A0A140D2T1_ZIKV_Sourisseau_2019.fasta @@ -0,0 +1,2 @@ +>A0A140D2T1_ZIKV_Sourisseau_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/128/A0A192B1T2_9HIV1_Haddox_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/A0A192B1T2_9HIV1_Haddox_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2c09eaa12f2a3382332c91b5a725ed667f572920 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A0A192B1T2_9HIV1_Haddox_2018.fasta @@ -0,0 +1,2 @@ +>A0A192B1T2_9HIV1_Haddox_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/128/A0A1I9GEU1_NEIME_Kennouche_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/A0A1I9GEU1_NEIME_Kennouche_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dbcf120c64faf93ce747ec2a2116e3388e79310a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A0A1I9GEU1_NEIME_Kennouche_2019.fasta @@ -0,0 +1,2 @@ +>A0A1I9GEU1_NEIME_Kennouche_2019 +114,114,30,12,12,12,90,90,90,90,90,90,90,90,90,90,90,90,127,127,90,90,90,90,18,18,18,1,45,1,34,14,82,112,126,53,78,90,82,51,78,39,85,14,68,1,107,82,97,67,71,36,125,125,71,107,4,107,19,79,79,104,4,107,27,82,88,59,58,61,61,19,19,55,41,4,19,58,16,16,16,16,16,19,19,99,10,80,16,16,16,58,31,31,31,47,71,47,27,102,116,19,19,91,99,80,99,54,103,21,115,21,25,25,115,89,21,99,99,10,120,120,99,99,120,61,115,61,31,55,61,5,115,61,61,115,115,60,98,121,95,104,42,42,102,27,43,9,124,46,46,57,116,120,2,120,26,62,62,5,25 diff --git a/conf/data/proteingym_v1/struc_seq/128/A0A247D711_LISMN_Stadelmann_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/A0A247D711_LISMN_Stadelmann_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..069400330b52624b35bc3a6c57db08d154a3e094 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A0A247D711_LISMN_Stadelmann_2021.fasta @@ -0,0 +1,2 @@ +>A0A247D711_LISMN_Stadelmann_2021 +12,114,126,126,40,39,78,12,39,112,126,125,40,36,88,53,66,54,54,65,66,41,2,2,2,60,41,115,54,65,65,65,66,53,69,60,98,98,69,89,66,54,66,66,66,58,111,2,110,110,53,36,88,110,9,17,39,124,1,1,76,108,23,23,23,121,121,28,28,28,28,108,85,67,108,67,105,1,1,34,17,39,12,112,40,12,114 diff --git a/conf/data/proteingym_v1/struc_seq/128/A0A2Z5U3Z0_9INFA_Doud_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/A0A2Z5U3Z0_9INFA_Doud_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5bcc1fbd1777238993cb5d7c2a05908db01b5f7d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A0A2Z5U3Z0_9INFA_Doud_2016.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Doud_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/128/A0A2Z5U3Z0_9INFA_Wu_2014.fasta b/conf/data/proteingym_v1/struc_seq/128/A0A2Z5U3Z0_9INFA_Wu_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..440f5ebe7fda2d9298d441bec3884eb1dc41e885 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A0A2Z5U3Z0_9INFA_Wu_2014.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Wu_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/128/A4D664_9INFA_Soh_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/A4D664_9INFA_Soh_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5fb2babce9c964fe1f87e4b713e1587980159435 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A4D664_9INFA_Soh_2019.fasta @@ -0,0 +1,2 @@ +>A4D664_9INFA_Soh_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/128/A4GRB6_PSEAI_Chen_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/A4GRB6_PSEAI_Chen_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..735589204f8cf98ed17f88c32439ce7198051450 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A4GRB6_PSEAI_Chen_2020.fasta @@ -0,0 +1,2 @@ +>A4GRB6_PSEAI_Chen_2020 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100644 index 0000000000000000000000000000000000000000..a78eabe646559c716bd72b59c3090daff18bfc2f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/A4_HUMAN_Seuma_2022.fasta @@ -0,0 +1,2 @@ +>A4_HUMAN_Seuma_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/128/AACC1_PSEAI_Dandage_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/AACC1_PSEAI_Dandage_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8d581c81772bcdc8b0eae9fcd4b0b7e58a149ef0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/AACC1_PSEAI_Dandage_2018.fasta @@ -0,0 +1,2 @@ +>AACC1_PSEAI_Dandage_2018 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,98,98,98,98,98,47,60,5,41,120,10,10,10,51,33,108,76,108,39,35,78,108,112,14,79,14,108,107,82,67,76,71,71,72,7,97,100,76,97,76,74,119,36,110,36,112,1,112,83,83,14,9,88,88,4,69,66,66,0,80,10,16,99,115,89,60,89,16,59,59,16,51,80,54,54,54,91,0,62,115,111,111,111,116,52,106,92,50,50,50,86,86,80,59,59,33,33,121,47,2,28,28,28,53,110,127,126,51,70,90,70,78,70,127,70,117,72,127,78,118,96,113,3,50,11,15,122,110,37,37,114,114,30,30,114,30,70,70,114,114,125,125,37,37,24,44,44,44,44,44,44,44,24,24,24,24,24,24,37 diff --git a/conf/data/proteingym_v1/struc_seq/128/ACE2_HUMAN_Chan_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/ACE2_HUMAN_Chan_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ac5b4acc27365663f7faeb57a18804c83f2d58bd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ACE2_HUMAN_Chan_2020.fasta @@ -0,0 +1,2 @@ +>ACE2_HUMAN_Chan_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/128/ADRB2_HUMAN_Jones_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/ADRB2_HUMAN_Jones_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..03d2ce4c4406ed7ceefc983e8eeba642ba1114ab --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ADRB2_HUMAN_Jones_2020.fasta @@ -0,0 +1,2 @@ +>ADRB2_HUMAN_Jones_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/128/AICDA_HUMAN_Gajula_2014_3cycles.fasta b/conf/data/proteingym_v1/struc_seq/128/AICDA_HUMAN_Gajula_2014_3cycles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..36a099ab95f4e526d5d8e4d6428f711b2f4f54c1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/AICDA_HUMAN_Gajula_2014_3cycles.fasta @@ -0,0 +1,2 @@ +>AICDA_HUMAN_Gajula_2014_3cycles +98,44,25,26,42,43,57,117,126,117,76,110,85,9,101,9,101,9,69,98,2,98,98,13,60,89,10,10,50,50,50,38,38,48,48,38,86,89,98,98,24,86,86,54,38,65,62,80,10,10,53,89,60,60,110,53,51,78,39,126,78,68,90,90,127,127,127,30,123,118,69,87,60,77,15,50,50,50,50,50,92,50,77,11,20,101,46,108,1,1,1,1,18,32,17,73,35,46,35,72,88,118,87,77,3,49,81,92,81,92,20,87,87,84,84,9,94,98,121,23,23,9,9,105,105,45,124,34,46,46,124,46,96,96,3,3,3,96,20,118,71,30,117,88,110,7,71,74,74,33,43,74,104,95,98,98,98,69,94,69,6,60,6,23,13,88,108,107,107,126,68,71,71,68,39,85,7,97,75,17,97,72,127,127,127,127,90,90,90,12,90,12,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta b/conf/data/proteingym_v1/struc_seq/128/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f7d07df165566d92f9b996cdadd051c4aafd499e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta @@ -0,0 +1,2 @@ +>AMFR_HUMAN_Tsuboyama_2023_4G3O +12,68,73,12,12,18,18,68,18,18,17,68,18,35,72,72,72,125,119,125,125,97,39,112,1,17,34,17,17,34,72,72,17,35,18,35,127,17,40,72,35,97,72,72,72,72,40 diff --git a/conf/data/proteingym_v1/struc_seq/128/AMIE_PSEAE_Wrenbeck_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/AMIE_PSEAE_Wrenbeck_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..70a49b0f55c0adf37f11dde57e6bf3331bc9bf38 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/AMIE_PSEAE_Wrenbeck_2017.fasta @@ -0,0 +1,2 @@ +>AMIE_PSEAE_Wrenbeck_2017 +59,21,86,21,50,77,77,106,16,55,120,16,120,106,92,77,91,92,106,106,106,116,116,104,13,47,118,88,126,88,9,34,73,1,1,32,73,32,18,18,68,46,17,68,39,46,35,76,88,22,77,20,20,92,92,92,49,63,63,52,63,118,102,8,104,104,2,28,108,40,23,4,104,22,102,116,104,95,43,57,114,112,83,13,124,32,124,45,93,105,101,27,93,105,101,101,20,92,92,77,77,120,116,116,64,42,42,60,98,2,2,2,42,104,116,26,64,91,91,86,50,77,106,101,27,82,79,79,62,103,54,103,62,62,26,42,41,98,98,2,60,60,55,61,62,26,62,5,5,89,86,91,62,58,16,26,55,55,58,43,92,92,92,3,113,113,84,57,46,112,34,1,73,117,96,67,117,77,96,108,53,43,20,20,49,49,81,92,49,49,106,106,26,41,6,119,119,28,127,40,78,68,73,82,79,105,45,101,27,93,45,101,101,20,20,92,92,92,106,106,106,116,26,26,42,42,61,61,26,64,64,64,91,29,91,106,106,101,27,27,13,16,62,103,29,29,29,29,64,64,26,64,91,99,15,99,99,80,51,53,78,126,88,125,72,97,97,100,100,100,119,121,76,76,75,67,28,74,104,104,22,74,22,74,71,7,74,7,7,7,125,76,7,76,4,22,104,104,42,110,37,114,40,97,100,100,97,35,97,35,72,35,127,127,35,127,72,97,72,125,72,125,125,119,119,5,5,5,5,60,60,60,25,60,111,69,61,60,60,98,98,2,98,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/ANCSZ_Hobbs_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/ANCSZ_Hobbs_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..35256fcf4807cbed6991370efc48a31a09e97bc3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ANCSZ_Hobbs_2022.fasta @@ -0,0 +1,2 @@ +>ANCSZ_Hobbs_2022 +98,121,94,121,57,104,23,4,19,116,106,116,52,52,84,117,78,126,30,51,78,70,36,82,83,35,87,85,13,31,42,52,52,19,77,91,120,120,91,87,82,58,60,55,62,91,50,80,80,91,55,5,69,69,55,59,89,66,103,29,0,29,58,58,111,31,61,61,58,103,103,66,60,89,115,58,6,31,33,53,126,30,78,88,76,76,74,76,74,74,74,74,47,31,111,104,104,43,102,116,116,102,102,19,13,25,61,4,116,116,102,104,9,119,72,97,72,30,35,35,127,35,73,39,35,17,34,97,36,97,112,75,112,36,114,110,110,112,36,36,124,17,17,105,67,34,35,97,35,17,67,35,1,1,97,97,67,23,23,23,102,104,106,43,52,113,122,84,57,110,30,30,51,53,30,110,55,13,23,94,69,42,42,61,26,64,64,106,91,15,89,89,25,60,25,115,103,54,54,0,0,91,61,61,69,61,55,58,54,54,103,65,54,0,66,29,111,59,61,115,66,29,21,103,60,41,41,61,6,59,71,71,7,126,110,33,23,76,22,13,4,4,4,31,31,116,42,116,116,116,116,116,116,116,4,4,47,23,2,121,98,98,98,37,24,37,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,98,98,98,98,2,98,98,98,98,98,24,24,24,24,24,94,95,23,13,9,94,2,121,104,13,47,47,47,23,28,28,72,123,28,28,125,119,118,104,87,122,26,122,122,42,89,99,66,103,21,115,5,62,103,62,62,62,61,115,62,62,103,0,103,0,54,103,66,59,31,111,25,115,115,54,0,65,0,0,0,62,61,41,37,121,114,30,30,30,30,90,90,70,68,12,70,71,126,78,88,13,9,13,47,13,102,79,13,19,120,16,16,106,99,120,15,89,41,5,89,99,65,65,54,91,29,29,116,42,33,19,27,107,27,27,67,67,108,36,36,119,75,108,28,36,40,124,105,18,105,105,32,32,45,46,18,105,46,105,39,83,9,108,35,71,47,82,79,79,79,47,107,107,27,4,19,19,19,19,116,42,13,13,27,102,102,19,19,55,53,9,13,82,82,53,120,60,2,98,5,59,58,115,115,115,25,25,24,24,98,23,94,83,9,107,14,45,83,88,13,119,119,88,89,59,59,79,107,27,27,27,45,45,45,93,105,14,105,105,27,14,105,9,9,14,14,9,23,47,2,60,98,121,23,23,112,40,36,108,72,125,75,97,125,119,114,119,94,60,94,47,69,94,83,28,114,36,32,83,39,32,34,124,45,105,124,45,83,83,9,94,9,124,45,1,18,39,40,32,73,18,18,18,32,39,124,32,93,14,105,1,83 diff --git a/conf/data/proteingym_v1/struc_seq/128/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta b/conf/data/proteingym_v1/struc_seq/128/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e5ec15de619685e3dc407491f5f50d258288ccc4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta @@ -0,0 +1,2 @@ +>ARGR_ECOLI_Tsuboyama_2023_1AOY +12,12,12,40,68,12,68,18,108,70,108,107,71,118,31,104,33,41,107,108,40,40,83,112,40,39,112,30,127,35,35,112,125,36,40,112,40,112,112,39,39,90,35,14,72,127,83,71,33,58,62,58,61,41,111,2,111,61,61,19,59,59,107,59,2,121,23,83,114 diff --git a/conf/data/proteingym_v1/struc_seq/128/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta b/conf/data/proteingym_v1/struc_seq/128/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..27efbe6826de4cb7654cd950436a850686211350 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta @@ -0,0 +1,2 @@ +>B2L11_HUMAN_Dutta_2010_binding-Mcl-1 +44,44,44,44,44,44,44,44,24,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,121,121,114,30,114,114,30,30,30,30,123,123,121,121,121,121,121,121,121,121,98,121,121,121,121,121,121,121,121,121,121,121,121,121,121,23,2,121,2,2,98,121,28,28,30,70,126,30,12,90,90,90,90,90,90,90,90,90,90,90,127,127,30,30,121,121,121,114,114,30,30,30,30,12,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,127,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta b/conf/data/proteingym_v1/struc_seq/128/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ac684125db2542abb37929e34646083f63135409 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta @@ -0,0 +1,2 @@ +>BBC1_YEAST_Tsuboyama_2023_1TG0 +25,21,103,103,0,0,29,58,29,61,64,62,21,25,24,5,5,5,21,21,5,62,64,64,29,62,103,0,0,0,0,103,89,115,5,41,66,89,115,0,54,54,103,21,115,111,111,111,111,115,103,103,103,99,99,89,66,61,29,66,66,54,54,21 diff --git a/conf/data/proteingym_v1/struc_seq/128/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta b/conf/data/proteingym_v1/struc_seq/128/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..95e5859e2e3e932336d0f2bb44d22157972d4bc8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta @@ -0,0 +1,2 @@ +>BCHB_CHLTE_Tsuboyama_2023_2KRU +96,118,52,87,96,117,108,117,36,40,35,112,40,40,40,40,40,30,40,40,35,90,17,14,12,73,18,46,108,39,14,7,72,97,7,74,113,8,46,117,117,40,46,1,39,40,1,32,12,39,39,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Deng_2012.fasta b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Deng_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..71db27e2f7816e7d5519899f151d025094f412e5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Deng_2012.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Deng_2012 +44,24,24,24,98,98,121,121,121,121,121,121,123,123,123,123,123,123,123,123,123,121,121,123,28,18,40,36,39,18,1,126,18,1,82,126,1,82,53,51,51,51,80,10,51,66,16,16,79,55,19,82,53,16,99,89,51,53,120,16,120,120,79,16,120,16,59,79,51,27,67,105,18,18,93,32,32,34,105,105,7,76,76,76,125,125,97,76,71,61,61,19,59,26,104,57,95,24,88,88,107,2,110,7,7,76,107,104,121,95,95,95,61,31,4,33,107,14,107,83,93,93,105,105,45,85,22,107,83,107,107,67,105,27,14,32,1,108,14,14,7,71,107,71,108,108,83,7,39,112,7,72,39,40,36,71,82,27,118,4,43,47,33,71,33,6,104,31,47,4,47,2,60,53,120,120,55,79,79,120,51,51,71,82,51,83,1,82,71,124,105,67,75,74,74,45,67,83,28,70,1,67,70,32,93,14,14,45,79,79,4,22,104,104,87,22,85,85,46,53,85,76,43,6,42,5,120,99,120,59,16,79,59,51,16,55,55,61,41,16,66,80,80,80,80,16,66,99,89,42,120,62,66,115,120,16,80,80,80,80,10,66,58,59,47,23,126,37,83,108,79,88,105,1,45,67,105,1,105,85,18,105,88,36,39,110 diff --git a/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Firnberg_2014.fasta b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Firnberg_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5b9f9e15b5c054754d37fa9d2c1e8d6dcff1aba6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Firnberg_2014.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Firnberg_2014 +44,24,24,24,98,98,121,121,121,121,121,121,123,123,123,123,123,123,123,123,123,121,121,123,28,18,40,36,39,18,1,126,18,1,82,126,1,82,53,51,51,51,80,10,51,66,16,16,79,55,19,82,53,16,99,89,51,53,120,16,120,120,79,16,120,16,59,79,51,27,67,105,18,18,93,32,32,34,105,105,7,76,76,76,125,125,97,76,71,61,61,19,59,26,104,57,95,24,88,88,107,2,110,7,7,76,107,104,121,95,95,95,61,31,4,33,107,14,107,83,93,93,105,105,45,85,22,107,83,107,107,67,105,27,14,32,1,108,14,14,7,71,107,71,108,108,83,7,39,112,7,72,39,40,36,71,82,27,118,4,43,47,33,71,33,6,104,31,47,4,47,2,60,53,120,120,55,79,79,120,51,51,71,82,51,83,1,82,71,124,105,67,75,74,74,45,67,83,28,70,1,67,70,32,93,14,14,45,79,79,4,22,104,104,87,22,85,85,46,53,85,76,43,6,42,5,120,99,120,59,16,79,59,51,16,55,55,61,41,16,66,80,80,80,80,16,66,99,89,42,120,62,66,115,120,16,80,80,80,80,10,66,58,59,47,23,126,37,83,108,79,88,105,1,45,67,105,1,105,85,18,105,88,36,39,110 diff --git a/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Jacquier_2013.fasta b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Jacquier_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fb2086a4c38bf17dcde630809cd5f31383a902a9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Jacquier_2013.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Jacquier_2013 +44,24,24,24,98,98,121,121,121,121,121,121,123,123,123,123,123,123,123,123,123,121,121,123,28,18,40,36,39,18,1,126,18,1,82,126,1,82,53,51,51,51,80,10,51,66,16,16,79,55,19,82,53,16,99,89,51,53,120,16,120,120,79,16,120,16,59,79,51,27,67,105,18,18,93,32,32,34,105,105,7,76,76,76,125,125,97,76,71,61,61,19,59,26,104,57,95,24,88,88,107,2,110,7,7,76,107,104,121,95,95,95,61,31,4,33,107,14,107,83,93,93,105,105,45,85,22,107,83,107,107,67,105,27,14,32,1,108,14,14,7,71,107,71,108,108,83,7,39,112,7,72,39,40,36,71,82,27,118,4,43,47,33,71,33,6,104,31,47,4,47,2,60,53,120,120,55,79,79,120,51,51,71,82,51,83,1,82,71,124,105,67,75,74,74,45,67,83,28,70,1,67,70,32,93,14,14,45,79,79,4,22,104,104,87,22,85,85,46,53,85,76,43,6,42,5,120,99,120,59,16,79,59,51,16,55,55,61,41,16,66,80,80,80,80,16,66,99,89,42,120,62,66,115,120,16,80,80,80,80,10,66,58,59,47,23,126,37,83,108,79,88,105,1,45,67,105,1,105,85,18,105,88,36,39,110 diff --git a/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Stiffler_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Stiffler_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e6dbce0801aad3485c797dce5d6a234c9db6a750 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BLAT_ECOLX_Stiffler_2015.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Stiffler_2015 +44,24,24,24,98,98,121,121,121,121,121,121,123,123,123,123,123,123,123,123,123,121,121,123,28,18,40,36,39,18,1,126,18,1,82,126,1,82,53,51,51,51,80,10,51,66,16,16,79,55,19,82,53,16,99,89,51,53,120,16,120,120,79,16,120,16,59,79,51,27,67,105,18,18,93,32,32,34,105,105,7,76,76,76,125,125,97,76,71,61,61,19,59,26,104,57,95,24,88,88,107,2,110,7,7,76,107,104,121,95,95,95,61,31,4,33,107,14,107,83,93,93,105,105,45,85,22,107,83,107,107,67,105,27,14,32,1,108,14,14,7,71,107,71,108,108,83,7,39,112,7,72,39,40,36,71,82,27,118,4,43,47,33,71,33,6,104,31,47,4,47,2,60,53,120,120,55,79,79,120,51,51,71,82,51,83,1,82,71,124,105,67,75,74,74,45,67,83,28,70,1,67,70,32,93,14,14,45,79,79,4,22,104,104,87,22,85,85,46,53,85,76,43,6,42,5,120,99,120,59,16,79,59,51,16,55,55,61,41,16,66,80,80,80,80,16,66,99,89,42,120,62,66,115,120,16,80,80,80,80,10,66,58,59,47,23,126,37,83,108,79,88,105,1,45,67,105,1,105,85,18,105,88,36,39,110 diff --git a/conf/data/proteingym_v1/struc_seq/128/BRCA1_HUMAN_Findlay_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/BRCA1_HUMAN_Findlay_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0a9f6652b1e42633718c5e04779e9ec3f8149344 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BRCA1_HUMAN_Findlay_2018.fasta @@ -0,0 +1,2 @@ +>BRCA1_HUMAN_Findlay_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/128/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/128/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..82766a94caf90ca48dcc471532e4dd03e27d1a04 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>BRCA2_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/128/C6KNH7_9INFA_Lee_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/C6KNH7_9INFA_Lee_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e97a3f6079354265b3d4613fc08f8231cdee426c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/C6KNH7_9INFA_Lee_2018.fasta @@ -0,0 +1,2 @@ +>C6KNH7_9INFA_Lee_2018 +12,12,12,12,12,12,90,90,90,90,90,90,90,127,127,127,123,123,123,121,23,2,13,55,19,19,16,80,80,80,16,120,106,26,64,122,5,62,62,29,29,29,116,33,71,42,42,61,21,64,62,64,62,62,29,99,99,16,52,26,15,15,26,26,52,52,26,52,52,122,42,26,106,92,92,11,20,52,104,104,8,46,108,22,22,27,27,76,13,4,22,23,76,100,22,22,55,19,106,106,106,92,92,11,11,11,52,52,42,42,55,55,55,26,52,50,11,57,57,37,114,70,127,126,71,71,107,79,43,19,19,116,19,19,64,29,29,62,21,5,21,21,86,21,115,62,99,103,54,0,115,61,61,61,19,61,31,111,25,5,5,61,61,55,4,64,62,54,54,0,29,58,64,42,116,61,58,61,86,99,86,38,48,38,10,26,64,26,26,5,62,99,80,54,80,65,50,99,50,106,43,43,118,118,76,118,43,4,107,43,120,55,55,88,55,120,65,38,48,38,38,38,89,89,21,86,86,54,86,91,62,15,106,26,26,26,5,42,42,55,94,55,26,106,15,50,92,50,50,38,86,38,99,99,64,64,10,10,38,48,48,48,38,86,16,99,80,65,0,29,29,103,103,99,62,16,64,19,19,19,106,106,63,11,11,109,63,63,63,52,63,11,52,26,26,26,26,106,15,26,26,106,106,26,5,116,116,116,52,102,52,122,122,122,42,25,62,15,91,62,26,106,106,52,57,57,113,122,15,16,99,16,19,79,19,19,64,64,64,26,42,60,24,98,98,98,98,24,24,60,99,120,120,79,116,116,116,26,26,26,42,62,122,120,31,55,79,16,80,80,38,10,120,41,41,89,115,54,54,89,66,33,6,126,83,107,126,73,1,39,90,73,39,68,90,68,40,12,30,71,107,47,104,19,115,99,99,26,26,25,69,69,94,95,24,24,24,121,121,114,30,30,119,30,90,30,30,90,90,70,68,90,70,108,70,70,117,117,70,70,117,118,70,108,118,71,108,108,118,71,70,46,117,70,68,1,39,68,73,1,39,68,40,108,90,73,108,126,70,75,107,74,76,107,51,59,58,16,2,55,19,16,51,80,16,79,79,4,53,6,110,30,119,78,7,72,67,9,67,124,75,67,76,83,75,36,88,14,39,14,107,14,67,107,107,28,30,123,121,121,121,121,121,121,123,123,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,30,114,30,114,121,37,37,24,24,44,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/CALM1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/CALM1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..608f98bb69f8a97dca6c9b1fd2ea49abd5769c52 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CALM1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>CALM1_HUMAN_Weile_2017 +40,40,36,36,40,30,30,30,40,70,12,90,68,68,90,90,71,28,39,40,71,23,23,23,2,59,33,107,107,108,1,108,108,83,7,97,108,7,7,7,125,119,7,7,83,112,40,112,40,108,35,39,83,28,39,40,83,23,94,121,2,33,107,71,33,71,83,78,108,112,40,39,73,68,68,127,127,127,127,127,35,127,35,127,127,73,68,90,68,108,108,39,108,107,83,23,23,95,59,33,107,107,108,1,108,108,83,7,39,108,125,7,7,125,125,7,7,110,83,112,112,108,108,35,39,14,83,108,108,83,83,2,23,95,33,107,107,33,83,108,78,83,34,40,40,34,112,125,125 diff --git a/conf/data/proteingym_v1/struc_seq/128/CAPSD_AAV2S_Sinai_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/CAPSD_AAV2S_Sinai_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..474cc4a283cb026e8da65644b416e2c639c27ef5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CAPSD_AAV2S_Sinai_2021.fasta @@ -0,0 +1,2 @@ +>CAPSD_AAV2S_Sinai_2021 +44,44,44,44,37,24,114,114,6,47,28,2,6,110,28,28,28,28,28,28,121,28,121,121,98,24,24,24,24,24,60,69,98,23,28,121,23,104,104,104,42,104,42,42,42,116,55,69,55,4,55,47,107,4,42,42,4,13,22,55,55,60,2,47,41,13,124,45,9,9,93,45,9,32,18,112,73,68,39,7,70,7,7,7,7,83,7,7,7,74,102,22,76,117,36,17,1,112,17,32,32,17,32,34,17,112,124,112,112,83,83,105,112,112,105,18,68,73,73,73,40,14,108,39,83,117,117,72,117,57,118,76,57,98,98,98,98,98,98,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,25,120,55,55,55,55,69,55,120,120,86,86,86,21,99,21,86,86,10,115,5,99,86,80,38,80,38,99,99,15,50,50,50,99,29,61,62,61,19,61,41,89,86,38,65,103,21,115,60,60,42,55,55,5,5,120,62,103,103,86,54,66,61,99,99,99,106,120,102,116,116,4,4,19,55,33,107,83,126,78,107,13,110,33,55,19,19,19,64,29,29,99,99,54,54,65,48,48,48,38,99,99,86,99,65,54,103,103,103,115,89,25,25,25,21,86,103,86,54,54,115,61,0,99,65,38,65,10,86,41,41,47,41,98,60,25,60,25,120,52,69,19,55,60,5,42,52,116,55,55,116,122,122,15,15,92,15,15,29,103,86,86,54,21,5,62,26,62,5,5,5,5,25,25,5,5,21,60,37,60,53,24,24,89,86,38,54,99,120,58,120,99,99,86,38,86,48,99,66,58,61,62,21,62,103,64,62,106,106,102,52,106,52,104,26,55,13,60,69,60,69,69,69,41,5,21,103,21,21,103,103,21,115,21,21,21,21,25,25,25,21,115,21,21,115,103,86,21,103,89,41,6,71,6,13,94,60,5,25,60,116,116,26,26,26,62,64,116,64,116,55,64,41,53,2,2,98,98,2,98,98,98,98,121,94,94,59,37,69,55,64,62,21,115,62,42,69,41,115,62,62,64,116,42,26,26,26,116,116,116,31,2,121,98,41,31,31,41,58,64,19,26,116,61,120,99,99,120,99,115,115,5,5,25,25,24,111,60,60,61,5,120,120,99,80,58,19,116,116,106,116,19,26,116,26,116,116,106,26,26,64,62,103,21,86,86,21,21,21,25,111,25,25,25,21,103,86,21,62,62,26,64,64,103,26,26,122,26,26,26,26,64,26,62,19,64,16,55,19,16,19,116,26,42,122,122,122,24,24,24,24,24,24,60,122,26,52,116,26,26,26,26,26,122,122,42,26,120,120,89,65,65,48,80,99,86,62,62,5,5,5,25,24,24,24,24,24,24,24,24,5,25,5,5,62,29,0,0,65,50,38,38,38,38,48,38,65,38,65,80,0,29,62,62,115,44,24,44,24,24,25,21,21,58,55,25,60,25,44,25,24,24,25,60,25,42,42,42,61,31,111,111,111,41,31,61,120,62,26,21,120,16,19,64,106,106,106,122,122,52 diff --git a/conf/data/proteingym_v1/struc_seq/128/CAR11_HUMAN_Meitlis_2020_gof.fasta b/conf/data/proteingym_v1/struc_seq/128/CAR11_HUMAN_Meitlis_2020_gof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0e4f631d89afbd2f31f17fa9871ce51a6dc3c679 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CAR11_HUMAN_Meitlis_2020_gof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_gof 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diff --git a/conf/data/proteingym_v1/struc_seq/128/CAR11_HUMAN_Meitlis_2020_lof.fasta b/conf/data/proteingym_v1/struc_seq/128/CAR11_HUMAN_Meitlis_2020_lof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7e3c5b76ebbfb6630764dd73573598994bc36cd6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CAR11_HUMAN_Meitlis_2020_lof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_lof 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diff --git a/conf/data/proteingym_v1/struc_seq/128/CAS9_STRP1_Spencer_2017_positive.fasta b/conf/data/proteingym_v1/struc_seq/128/CAS9_STRP1_Spencer_2017_positive.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2c416e282972effd9c620a061be018098b02726e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CAS9_STRP1_Spencer_2017_positive.fasta @@ -0,0 +1,2 @@ +>CAS9_STRP1_Spencer_2017_positive 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diff --git a/conf/data/proteingym_v1/struc_seq/128/CASP3_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/CASP3_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..69ad6f31fa2e481c8d2fc9518f8d963a250dfc5c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CASP3_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP3_HUMAN_Roychowdhury_2020 +44,44,44,24,24,24,5,26,120,102,116,52,4,4,4,102,102,63,109,81,81,81,81,3,63,116,26,116,104,6,57,6,37,31,60,111,61,4,118,27,46,108,14,96,70,73,1,117,17,39,46,126,35,112,96,113,3,3,81,3,3,63,63,8,43,33,110,126,118,45,68,108,34,34,17,46,85,85,85,85,102,102,102,102,102,63,49,81,81,81,109,63,63,64,106,106,116,43,106,106,106,116,116,43,106,58,79,33,33,7,85,105,101,14,105,85,107,74,76,85,85,85,22,102,22,20,20,63,49,81,81,81,92,63,26,26,26,26,26,26,26,62,62,62,24,24,44,44,44,44,44,44,44,44,44,44,44,44,69,69,55,47,13,102,63,63,49,92,92,92,106,64,64,26,26,26,26,26,64,4,55,4,4,22,85,27,13,79,45,93,18,93,18,93,32,105,35,97,76,85,104,95,22,118,107,78,108,67,124,40,73,1,82,83,14,27,4,31,13,61,61,21,61,31,121,121,98,47,41,58,64,64,64,61,19,79,120,10,89,77,15,63,63,116,120,55,55,13,55,95,98,98,121,98,98,98,98,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/CASP7_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/CASP7_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e87555cce8b3e284371d100f420b3426c1c623a4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CASP7_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP7_HUMAN_Roychowdhury_2020 +89,58,99,91,15,26,25,25,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,98,121,121,98,95,95,42,41,116,52,52,4,116,4,116,102,63,3,81,81,81,81,20,63,116,26,116,43,57,57,6,122,26,111,61,64,4,118,27,118,108,14,96,70,73,1,117,39,39,46,117,40,124,87,113,3,3,81,3,3,109,63,8,43,4,126,126,118,1,39,108,34,67,17,46,76,85,85,85,102,102,102,102,102,63,49,81,81,81,81,63,63,106,106,26,26,106,106,106,106,106,43,43,59,58,59,53,59,7,85,124,101,14,67,85,107,74,74,85,85,85,22,22,22,8,20,63,49,81,81,81,81,63,106,106,26,26,26,26,120,5,64,62,24,44,44,44,44,44,44,44,44,44,44,44,44,24,44,44,44,24,2,47,2,4,116,63,63,49,92,92,92,106,64,64,26,26,26,26,91,29,79,120,55,4,13,82,79,79,79,45,93,39,93,18,34,32,34,17,100,76,105,88,22,76,33,71,78,70,108,112,40,73,1,14,76,14,107,13,6,13,55,120,62,5,111,98,2,98,47,120,41,64,120,64,64,19,79,120,10,86,77,106,52,63,116,59,120,55,13,13,13 diff --git a/conf/data/proteingym_v1/struc_seq/128/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta b/conf/data/proteingym_v1/struc_seq/128/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0d4de4ab276e2c85bdac1b193f29cf0fb3d34c88 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta @@ -0,0 +1,2 @@ +>CATR_CHLRE_Tsuboyama_2023_2AMI +6,36,114,114,30,30,30,12,90,68,68,90,68,108,108,39,40,107,83,23,23,95,31,107,107,107,108,1,108,108,83,7,108,7,125,70,125,125,125,110,126,110,112,112,112,40,108,35,39,14,7,39,108,83,23,121,23,33,33,33,107,107,82,108,126,83,112,40,40,39,36,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta b/conf/data/proteingym_v1/struc_seq/128/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..773a511e784c6dbb8c27dfe84e5ecf8c13a21cf9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta @@ -0,0 +1,2 @@ +>CBPA2_HUMAN_Tsuboyama_2023_1O6X +25,21,89,103,54,48,38,80,80,59,19,33,71,108,71,33,30,68,108,70,90,40,40,30,30,123,28,28,2,53,10,10,38,86,120,59,111,61,61,61,64,99,80,38,65,10,51,51,53,110,71,78,30,70,70,126,70,68,108,125,70,39,36,78,10,10,86,38,38,86,21,21 diff --git a/conf/data/proteingym_v1/struc_seq/128/CBS_HUMAN_Sun_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/CBS_HUMAN_Sun_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..578de7c25548cf93325031733896cac9194f4b6e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CBS_HUMAN_Sun_2020.fasta @@ -0,0 +1,2 @@ +>CBS_HUMAN_Sun_2020 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,121,121,121,121,98,94,94,36,69,27,13,4,102,55,69,2,69,60,98,60,94,69,98,98,98,98,98,98,98,94,69,42,122,122,42,25,24,60,60,60,60,121,121,114,83,124,13,9,124,27,55,13,69,77,15,91,51,53,7,67,13,94,75,75,83,88,8,52,106,77,92,92,43,16,19,4,19,27,45,105,27,27,27,45,105,105,93,32,32,73,1,18,68,17,97,125,125,125,125,88,96,118,52,63,49,11,49,3,96,113,87,87,101,45,124,101,45,105,45,101,93,105,101,46,67,76,96,20,49,49,49,20,113,113,52,84,84,79,27,126,108,105,46,70,93,46,124,112,1,101,101,20,3,3,113,96,84,84,2,47,2,47,23,23,28,74,87,87,87,83,46,96,9,97,57,96,110,114,110,6,52,113,113,113,87,13,45,27,27,45,45,45,93,85,45,45,105,85,85,45,45,97,67,76,88,97,72,36,7,125,36,8,8,63,49,49,81,20,20,63,102,102,101,85,45,101,85,85,67,85,85,67,85,75,100,97,76,118,113,113,20,20,49,3,3,63,52,52,52,52,42,63,63,6,6,121,37,69,84,94,69,69,25,122,69,52,13,13,55,55,116,26,116,42,116,116,102,102,27,22,22,13,94,13,20,63,11,11,3,3,20,43,27,45,14,14,14,105,39,1,67,97,75,100,100,36,94,100,107,107,33,107,107,19,102,14,101,20,101,108,20,20,1,1,96,20,9,47,52,116,26,52,63,49,49,92,92,77,19,79,33,33,74,107,107,4,23,76,76,85,97,7,7,7,7,75,125,125,75,28,112,40,72,30,114,114,114,28,30,114,28,28,121,47,110,47,71,107,33,4,107,14,110,13,5,5,26,52,15,84,106,106,116,33,33,107,107,71,88,14,35,108,118,97,70,7,7,33,33,43,15,91,106,26,43,42,5,122,42,106,64,62,91,79,33,108,126,71,14,112,72,67,67,72,125,125,7,75,107,107,31,4,33,4,19,13,55,61,61,64,26,26,52,92,15,106,116,4,33,107,71,71,71,57,108,127,57,118,72,110,118,43,106,15,15,91,15,15,86,54,103,103,115,115,111,111,111,111,115,62,103,54,103,29,91,91,26,91,77,78,126,30,40,39,90,68,68,68,90,90,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta b/conf/data/proteingym_v1/struc_seq/128/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8067afc235f6d5d5014a8d87cde7572c98a4ae7c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta @@ -0,0 +1,2 @@ +>CBX4_HUMAN_Tsuboyama_2023_2K28 +25,5,5,58,59,58,103,66,0,103,103,25,25,41,66,58,66,103,29,115,115,115,25,2,98,111,60,60,115,115,0,66,66,66,41,2,110,72,72,127,70,110,7,70,126,78,70,12,12,126 diff --git a/conf/data/proteingym_v1/struc_seq/128/CCDB_ECOLI_Adkar_2012.fasta b/conf/data/proteingym_v1/struc_seq/128/CCDB_ECOLI_Adkar_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3c1c585cf414deefe9180c9b58f6623c0746ba3a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CCDB_ECOLI_Adkar_2012.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Adkar_2012 +64,61,41,58,29,0,29,29,58,115,25,24,5,5,5,0,0,0,0,16,5,5,60,24,60,24,53,25,53,89,115,0,0,0,0,0,66,66,66,60,37,2,121,121,98,119,94,13,85,85,79,79,16,66,89,115,25,25,111,66,66,66,16,0,79,47,41,66,65,0,80,53,66,58,115,0,29,29,103,103,58,58,31,110,72,114,70,90,67,85,1,67,67,85,67,67,67,100,125,100,125 diff --git a/conf/data/proteingym_v1/struc_seq/128/CCDB_ECOLI_Tripathi_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/CCDB_ECOLI_Tripathi_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4d9e66f8df21b0331e5af568c7b2d8e3aa77211b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CCDB_ECOLI_Tripathi_2016.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Tripathi_2016 +64,61,41,58,29,0,29,29,58,115,25,24,5,5,5,0,0,0,0,16,5,5,60,24,60,24,53,25,53,89,115,0,0,0,0,0,66,66,66,60,37,2,121,121,98,119,94,13,85,85,79,79,16,66,89,115,25,25,111,66,66,66,16,0,79,47,41,66,65,0,80,53,66,58,115,0,29,29,103,103,58,58,31,110,72,114,70,90,67,85,1,67,67,85,67,67,67,100,125,100,125 diff --git a/conf/data/proteingym_v1/struc_seq/128/CCR5_HUMAN_Gill_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/CCR5_HUMAN_Gill_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8bd273971fe87b932abcbe440e471b843d73fb18 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CCR5_HUMAN_Gill_2023.fasta @@ -0,0 +1,2 @@ +>CCR5_HUMAN_Gill_2023 +98,98,98,121,121,121,121,121,121,121,121,121,98,98,98,98,24,24,69,94,75,1,40,39,18,124,17,34,105,67,17,1,18,1,39,32,32,18,39,32,32,32,32,32,32,18,18,32,18,18,32,34,17,17,34,97,97,17,75,100,97,83,14,1,32,34,32,32,32,18,18,32,93,32,32,93,93,32,93,93,32,18,32,18,105,105,67,85,22,85,67,22,104,6,55,13,59,51,78,71,79,82,18,32,14,32,93,32,93,32,93,93,32,32,93,32,32,18,32,32,32,73,32,73,32,32,34,34,17,105,67,67,72,72,72,72,72,72,67,67,14,14,1,112,1,73,90,73,18,68,90,73,18,18,18,39,1,18,32,18,105,14,14,14,13,55,79,79,66,103,21,21,25,122,122,5,115,66,29,55,41,71,7,114,114,125,125,40,30,70,40,68,73,18,73,17,97,34,17,97,67,34,17,72,17,1,39,39,73,18,90,68,1,18,68,1,1,1,68,97,112,72,72,125,28,125,125,30,30,112,40,40,39,73,68,39,18,68,68,73,73,68,35,1,17,17,39,1,1,105,1,34,39,73,32,18,17,18,73,17,97,72,72,72,97,97,97,112,124,124,40,1,112,18,73,18,73,32,73,18,18,1,1,93,39,39,93,93,32,93,93,32,32,34,34,17,17,97,97,17,17,97,35,35,35,70,35,73,127,35,35,127,127,72,72,72,72,72,72,72,72,72,72,72,123,123,123,123,121,121,98,56,56,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta b/conf/data/proteingym_v1/struc_seq/128/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bcc11fd04eb6ec85eec9716adc3c9d2b7e4f99c6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta @@ -0,0 +1,2 @@ +>CD19_HUMAN_Klesmith_2019_FMC_singles +44,24,24,98,121,114,123,123,123,123,123,123,123,123,123,123,123,123,121,23,2,52,92,92,92,92,92,26,26,52,116,26,120,106,99,99,89,86,5,25,98,98,60,24,98,60,115,58,29,80,80,54,86,89,89,10,80,98,41,115,5,99,0,65,54,62,62,64,62,5,62,99,48,48,80,99,120,116,61,99,80,54,38,99,62,64,106,116,52,55,26,15,15,91,0,0,80,99,5,66,115,66,98,98,98,60,89,89,29,99,15,91,15,11,52,11,20,87,87,52,92,92,15,106,84,52,104,104,104,22,104,104,104,104,23,23,121,121,98,98,24,24,24,24,24,24,98,121,121,121,47,22,87,87,52,106,15,15,15,115,25,25,115,15,15,15,15,21,69,2,47,22,104,22,104,104,95,98,98,98,98,98,98,98,87,52,52,15,11,11,52,52,26,26,99,38,86,99,99,99,120,41,58,41,31,120,120,61,26,26,99,99,80,0,54,103,99,120,5,111,25,115,99,0,54,54,54,54,99,99,120,41,60,42,69,69,5,120,54,38,48,99,99,99,10,99,48,80,99,120,106,116,52,42,5,26,15,91,91,80,54,80,99,86,115,89,10,99,91,15,92,15,106,106,52,84,57,117,30,123,72,123,123,72,72,72,72,72,72,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,127,127,72,123,121,121,121,121,121,98,24,24,44,44,44,44,44,44,44,44,44,44,24,24,98,98,98,98,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,122,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/CP2C9_HUMAN_Amorosi_2021_abundance.fasta b/conf/data/proteingym_v1/struc_seq/128/CP2C9_HUMAN_Amorosi_2021_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..afe171a784253e0cf7c550d64829a5f85d36d375 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CP2C9_HUMAN_Amorosi_2021_abundance.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_abundance +30,30,12,12,12,12,90,90,90,90,90,90,90,90,90,90,90,90,90,126,126,12,30,110,94,114,69,42,120,120,120,120,120,41,59,4,4,19,4,31,59,13,95,41,7,76,14,107,107,14,14,70,7,118,108,70,118,118,7,74,104,4,33,106,64,91,120,58,59,61,19,19,91,91,92,91,43,82,118,83,71,57,118,107,76,76,107,76,97,76,74,107,4,4,59,19,120,64,79,82,97,67,22,74,97,1,45,76,22,22,118,76,22,55,104,42,37,36,22,118,36,40,108,108,68,73,73,73,68,70,67,1,7,76,97,105,67,108,7,72,17,14,70,68,32,105,18,18,1,1,68,18,1,68,68,14,71,70,36,88,59,53,58,59,53,82,14,105,105,1,32,93,105,93,105,45,105,45,27,22,45,14,85,118,6,76,110,94,124,28,114,30,30,126,40,90,18,39,18,18,18,1,73,18,14,9,108,14,107,14,83,112,1,1,34,39,34,83,67,7,72,125,97,125,114,114,114,125,97,112,40,17,32,18,18,18,32,73,68,18,73,73,18,18,73,68,18,18,35,70,112,40,125,28,112,94,94,60,69,36,22,76,14,14,75,83,1,1,39,39,40,97,35,114,114,125,28,121,98,94,36,112,83,39,45,27,105,105,124,14,105,1,7,14,32,18,105,1,32,32,14,1,1,14,105,18,108,108,18,18,82,105,105,75,75,112,36,127,17,17,35,68,18,112,17,67,14,97,76,76,13,74,69,69,25,13,9,71,83,125,83,83,108,108,14,107,14,32,14,107,105,32,45,105,32,93,93,45,45,105,27,4,107,19,19,58,91,64,64,19,64,19,61,61,61,55,69,55,5,61,64,64,64,64,64,91,91,91,16,79,27,107,107,14,45,85,75,100,75,9,9,23,94,9,94,13,83,9,14,13,13,27,13,31,111,111,4,4,107,31,31,13,94,9,9,45,45,23,4,4,74,23,4,47,23,1,105,83,112,93,1,32,1,32,32,39,1,105,32,45,14,14,14,88,79,79,79,79,16,79,120,69,94,9,94,94,13,69,55,61,61,19,4,4,107,33,4,19,19,79,55,41,66,66,66,66,59,16,79,29 diff --git a/conf/data/proteingym_v1/struc_seq/128/CP2C9_HUMAN_Amorosi_2021_activity.fasta b/conf/data/proteingym_v1/struc_seq/128/CP2C9_HUMAN_Amorosi_2021_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bc43878318b59b24359f026c709fb874510217b8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CP2C9_HUMAN_Amorosi_2021_activity.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_activity +30,30,12,12,12,12,90,90,90,90,90,90,90,90,90,90,90,90,90,126,126,12,30,110,94,114,69,42,120,120,120,120,120,41,59,4,4,19,4,31,59,13,95,41,7,76,14,107,107,14,14,70,7,118,108,70,118,118,7,74,104,4,33,106,64,91,120,58,59,61,19,19,91,91,92,91,43,82,118,83,71,57,118,107,76,76,107,76,97,76,74,107,4,4,59,19,120,64,79,82,97,67,22,74,97,1,45,76,22,22,118,76,22,55,104,42,37,36,22,118,36,40,108,108,68,73,73,73,68,70,67,1,7,76,97,105,67,108,7,72,17,14,70,68,32,105,18,18,1,1,68,18,1,68,68,14,71,70,36,88,59,53,58,59,53,82,14,105,105,1,32,93,105,93,105,45,105,45,27,22,45,14,85,118,6,76,110,94,124,28,114,30,30,126,40,90,18,39,18,18,18,1,73,18,14,9,108,14,107,14,83,112,1,1,34,39,34,83,67,7,72,125,97,125,114,114,114,125,97,112,40,17,32,18,18,18,32,73,68,18,73,73,18,18,73,68,18,18,35,70,112,40,125,28,112,94,94,60,69,36,22,76,14,14,75,83,1,1,39,39,40,97,35,114,114,125,28,121,98,94,36,112,83,39,45,27,105,105,124,14,105,1,7,14,32,18,105,1,32,32,14,1,1,14,105,18,108,108,18,18,82,105,105,75,75,112,36,127,17,17,35,68,18,112,17,67,14,97,76,76,13,74,69,69,25,13,9,71,83,125,83,83,108,108,14,107,14,32,14,107,105,32,45,105,32,93,93,45,45,105,27,4,107,19,19,58,91,64,64,19,64,19,61,61,61,55,69,55,5,61,64,64,64,64,64,91,91,91,16,79,27,107,107,14,45,85,75,100,75,9,9,23,94,9,94,13,83,9,14,13,13,27,13,31,111,111,4,4,107,31,31,13,94,9,9,45,45,23,4,4,74,23,4,47,23,1,105,83,112,93,1,32,1,32,32,39,1,105,32,45,14,14,14,88,79,79,79,79,16,79,120,69,94,9,94,94,13,69,55,61,61,19,4,4,107,33,4,19,19,79,55,41,66,66,66,66,59,16,79,29 diff --git a/conf/data/proteingym_v1/struc_seq/128/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta b/conf/data/proteingym_v1/struc_seq/128/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c5fb099d520c434ba25c64546acb6869042eae40 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta @@ -0,0 +1,2 @@ +>CSN4_MOUSE_Tsuboyama_2023_1UFM +98,98,121,119,123,123,72,127,72,35,127,68,73,39,68,68,18,70,90,40,33,36,126,6,120,120,33,82,82,107,67,108,108,67,1,39,108,108,39,108,1,39,39,108,68,68,108,126,70,72,78,125,72,125,100,88,6,59,66,59,59,31,2,31,13,53,79,29,120,62,5,21 diff --git a/conf/data/proteingym_v1/struc_seq/128/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta b/conf/data/proteingym_v1/struc_seq/128/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d8e533e5104981694bbef8dbb1acf16ec1db91d8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta @@ -0,0 +1,2 @@ +>CUE1_YEAST_Tsuboyama_2023_2MYX +5,88,6,55,9,110,36,112,124,1,34,18,34,67,72,97,112,125,28,36,9,97,107,88,14,85,27,107,14,88,88,108,83,67,1,17,35,1,17,72,7,75,97,125,125,125,6,13,111,33,71,25 diff --git a/conf/data/proteingym_v1/struc_seq/128/D7PM05_CLYGR_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/D7PM05_CLYGR_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1619eae64e0776a7ecc17974629ecd7d191a4e2e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/D7PM05_CLYGR_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>D7PM05_CLYGR_Somermeyer_2022 +37,24,37,94,47,23,107,9,23,13,27,76,6,120,106,50,50,50,50,50,50,50,50,15,99,120,122,122,15,115,54,54,65,48,48,38,50,91,106,102,102,63,106,77,80,38,38,38,38,48,66,80,115,66,120,120,41,33,47,53,53,51,74,78,76,51,77,53,76,51,43,118,102,102,77,43,87,122,24,5,115,41,13,79,79,107,47,4,27,13,55,120,120,65,65,48,65,65,65,48,80,86,115,41,66,65,48,50,50,48,50,54,91,66,106,115,111,63,15,106,50,50,50,50,50,50,50,50,99,115,41,2,47,100,74,16,59,33,47,31,59,59,58,16,89,66,21,38,54,38,38,65,65,54,115,66,6,95,41,41,120,10,54,65,65,48,38,65,54,0,29,58,115,62,5,103,103,0,65,65,48,48,65,65,65,99,99,120,120,69,13,55,13,55,55,41,115,115,54,99,38,50,38,48,38,38,86,38,38,89,60,98,98,24,24,60,41,41,89,38,38,38,38,48,50,10,77,99,10,53,53,114,114,114,125 diff --git a/conf/data/proteingym_v1/struc_seq/128/DLG4_HUMAN_Faure_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/DLG4_HUMAN_Faure_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a92d25f3f42a52d50f94f7325488b796c5d5d39e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DLG4_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>DLG4_HUMAN_Faure_2021 +44,44,44,24,60,98,24,24,44,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,25,25,25,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,98,42,60,60,89,38,38,54,38,10,10,51,59,59,19,55,116,55,59,31,61,29,66,58,58,19,31,31,31,42,61,5,60,111,116,116,64,16,29,0,103,58,61,31,31,71,33,31,31,31,47,2,6,37,53,58,62,103,0,0,0,0,16,51,10,115,47,42,19,64,116,31,33,33,126,126,33,126,127,71,78,83,83,53,6,61,120,16,80,80,65,54,65,99,89,89,41,2,41,115,115,54,54,86,89,10,51,16,16,19,19,31,19,19,31,61,29,66,16,58,59,31,31,31,41,115,61,2,98,42,61,61,16,29,0,103,62,61,31,31,110,31,31,61,31,2,2,6,37,66,66,62,62,99,0,0,0,58,66,80,89,111,61,19,64,116,31,33,33,126,126,33,126,30,110,53,36,126,53,31,61,99,66,38,80,65,54,0,115,66,41,98,98,98,98,98,24,24,24,24,24,24,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,98,98,98,98,98,98,98,98,98,98,98,60,89,5,54,54,86,10,10,51,16,59,19,31,31,31,19,31,61,29,29,59,59,59,31,55,61,31,19,58,29,29,103,62,61,104,31,110,31,31,31,31,110,6,110,37,66,58,62,58,29,0,0,29,19,16,10,120,31,31,19,19,4,4,33,59,126,126,33,126,127,71,78,83,40,53,47,61,120,51,80,80,65,0,0,58,59,33,70,71,33,70,90,126,12,90,90,90,90,90,90,90,90,90,127,30,114,114,114,37,98,98,98,98,121,95,98,121,95,121,95,69,95,69,62,65,0,0,62,120,19,58,61,89,60,121,121,121,123,121,121,41,104,120,66,115,62,62,62,5,62,64,54,65,54,0,29,58,58,42,5,31,59,120,58,0,0,54,86,66,41,60,98,98,98,60,60,5,99,0,29,0,120,59,6,71,71,33,71,70,68,70,70,90,90,90,90,90,127,30,30,30,121,121,121,98,98,98,98,98,98,23,2,71,13,79,16,0,38,54,38,38,38,86,120,19,19,106,106,63,109,63,3,113,96,118,83,57,114,39,68,88,70,35,97,117,100,100,74,74,118,8,8,8,52,43,116,106,106,15,84,122,69,60,24,24,24,60,60,122,52,52,52,26,52,122,84,37,114,126,30,30,78,72,127,70,71,127,127,108,71,82,82,79,66,86,86,89,25,25,89,10,10,16,120,59,27,71,33,102,4,71,43,102,4,102,102,8,20,63,11,11,122,69,13,96,124,9,101,67,124,85,76,67,67,7,107,104,8,63,49,49,3,113,20,87,87,83,39,14,22,85,85,85,76,76,36,125,40,125,112,112,112,40,39,68,108,108,68,70,36,70,127,83,46,72,35,97,9,13,22,20,20,20,3,113,87,87,118,117,83,108,126,46,40,39,126,117,68,90,117,96,12,28,88,102,55,99,89,99,38,10,21,21,25,60,5,53 diff --git a/conf/data/proteingym_v1/struc_seq/128/DLG4_RAT_McLaughlin_2012.fasta b/conf/data/proteingym_v1/struc_seq/128/DLG4_RAT_McLaughlin_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c8130f611b7741b205912e2ca9eca6a3416eef74 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DLG4_RAT_McLaughlin_2012.fasta @@ -0,0 +1,2 @@ +>DLG4_RAT_McLaughlin_2012 +44,44,44,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,121,121,98,98,98,98,98,111,5,89,99,38,54,38,10,10,51,16,59,19,31,31,59,19,31,61,29,66,58,58,59,31,31,31,42,31,42,31,31,116,116,19,58,29,0,103,58,31,31,31,71,33,31,31,31,47,2,110,37,53,58,62,103,0,0,0,29,16,59,51,115,47,31,19,64,116,31,33,33,126,126,33,78,127,126,82,83,108,53,33,31,120,16,80,80,0,54,65,99,89,89,41,2,41,41,115,54,0,86,10,10,51,16,16,19,19,31,19,19,31,61,29,66,16,58,59,31,31,31,41,41,61,2,98,42,31,61,16,29,0,103,29,31,31,31,71,33,31,31,31,33,2,33,69,66,58,62,62,66,0,0,0,58,66,80,89,31,31,19,116,116,31,33,33,126,126,33,126,30,110,33,114,126,53,31,61,99,66,38,99,80,54,0,115,58,41,2,98,98,98,98,98,98,98,98,98,98,98,98,98,98,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,98,98,98,98,24,98,98,98,98,98,98,98,60,41,5,0,0,86,80,10,59,16,59,19,31,31,31,19,31,61,29,66,59,59,59,31,55,31,31,31,16,58,29,29,62,61,104,33,126,33,33,31,33,110,6,36,53,16,58,62,59,16,29,29,29,19,16,10,120,31,31,19,19,4,4,33,33,126,126,33,126,127,71,82,83,108,53,47,61,120,51,80,80,0,0,29,58,79,33,108,71,33,1,73,108,39,70,68,90,70,70,90,90,90,90,127,90,127,72,72,114,119,37,98,98,98,98,98,121,2,2,2,2,42,41,103,65,0,80,64,120,19,58,61,41,60,23,121,121,83,28,23,47,88,55,66,103,5,29,62,61,62,64,0,0,54,0,29,58,61,42,5,31,59,120,58,0,0,103,103,66,41,60,98,98,98,60,60,5,16,0,29,0,120,59,19,33,71,33,126,68,68,70,70,90,90,90,90,70,90,30,30,114,121,121,121,121,98,98,98,98,98,24,60,71,55,59,16,16,54,54,38,86,38,86,120,19,19,102,102,63,109,63,113,113,87,27,9,57,126,39,40,88,68,35,97,117,125,72,74,74,118,8,8,8,52,43,116,106,106,120,6,84,69,95,24,60,60,60,60,52,52,52,52,52,52,84,84,37,114,126,30,30,78,70,127,70,71,127,127,112,107,82,82,79,80,86,10,25,111,111,89,10,99,16,120,79,27,71,33,102,4,71,102,102,4,102,102,8,20,20,63,109,52,69,69,96,124,9,101,67,124,85,76,67,67,97,107,104,8,20,49,49,20,113,20,13,87,124,39,14,22,27,85,85,76,76,36,125,40,125,112,112,112,112,39,68,108,1,68,70,71,126,127,46,46,127,35,97,9,13,22,20,102,20,113,3,87,118,46,117,14,108,126,46,108,39,126,117,68,90,117,96,12,40,88,102,55,5,89,99,38,99,21,21,21,21,21,10 diff --git a/conf/data/proteingym_v1/struc_seq/128/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta b/conf/data/proteingym_v1/struc_seq/128/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1229fbc112d636a89c509226b6aa600f519d8ac3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta @@ -0,0 +1,2 @@ +>DN7A_SACS2_Tsuboyama_2023_1JIC +37,89,21,21,21,21,25,25,25,21,21,21,5,25,41,111,89,115,29,29,54,86,66,54,111,111,89,66,54,54,54,115,41,115,60,98,24,24,115,103,54,86,54,115,89,53,6,41,53,94,114,110,66,110,37 diff --git a/conf/data/proteingym_v1/struc_seq/128/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta b/conf/data/proteingym_v1/struc_seq/128/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..02fee9ca2254fdce2cd144adec0fd2160dd6a5db --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta @@ -0,0 +1,2 @@ +>DNJA1_HUMAN_Tsuboyama_2023_2LO1 +37,36,67,9,88,105,34,85,75,23,94,2,23,36,112,40,112,112,39,39,32,18,18,35,34,17,72,97,72,72,72,72,100,97,72,72,72,72,127,39,17,68,18,32,18,18,32,32,32,39,34,112,112,17,40,70,17,35,72,40,40,30,30,126,37 diff --git a/conf/data/proteingym_v1/struc_seq/128/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta b/conf/data/proteingym_v1/struc_seq/128/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5150a71f47a4d7f838392031d901afb9e4e2485b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta @@ -0,0 +1,2 @@ +>DOCK1_MOUSE_Tsuboyama_2023_2M0Y +21,21,62,62,41,69,5,58,58,0,29,29,58,58,61,61,61,5,5,60,42,42,5,5,5,62,64,64,61,62,29,29,0,0,0,29,103,103,89,5,111,89,29,29,29,29,115,66,41,2,41,37,42,62,62,103,29,120,66,61,58,29,16,16,0,55 diff --git a/conf/data/proteingym_v1/struc_seq/128/DYR_ECOLI_Nguyen_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/DYR_ECOLI_Nguyen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..166ed3cbdac515e9eef6ec61c3565d7519029dbf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DYR_ECOLI_Nguyen_2023.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Nguyen_2023 +11,11,92,3,3,63,92,92,106,122,5,26,26,26,61,5,42,13,95,5,5,58,33,59,126,126,78,30,127,70,117,7,30,117,113,8,8,63,63,81,3,3,113,113,57,87,84,75,75,36,114,6,42,52,42,8,109,63,109,3,3,113,84,122,122,25,60,24,24,24,122,122,3,11,113,84,57,110,114,117,113,57,114,96,113,110,37,122,11,11,11,81,81,3,113,87,43,57,57,84,119,7,118,84,7,57,113,92,92,50,92,50,50,50,91,15,15,42,122,42,42,26,61,116,61,6,60,37,37,89,60,66,66,10,38,48,54,86,38,65,62,62,61,61,60,2,61,58,64,62,91,50,38,65,50,54,91,66,0 diff --git a/conf/data/proteingym_v1/struc_seq/128/DYR_ECOLI_Thompson_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/DYR_ECOLI_Thompson_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..876a18a3cf6264bb465e6bda7e2f5a9752b0df1f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/DYR_ECOLI_Thompson_2019.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Thompson_2019 +11,11,92,3,3,63,92,92,106,122,5,26,26,26,61,5,42,13,95,5,5,58,33,59,126,126,78,30,127,70,117,7,30,117,113,8,8,63,63,81,3,3,113,113,57,87,84,75,75,36,114,6,42,52,42,8,109,63,109,3,3,113,84,122,122,25,60,24,24,24,122,122,3,11,113,84,57,110,114,117,113,57,114,96,113,110,37,122,11,11,11,81,81,3,113,87,43,57,57,84,119,7,118,84,7,57,113,92,92,50,92,50,50,50,91,15,15,42,122,42,42,26,61,116,61,6,60,37,37,89,60,66,66,10,38,48,54,86,38,65,62,62,61,61,60,2,61,58,64,62,91,50,38,65,50,54,91,66,0 diff --git a/conf/data/proteingym_v1/struc_seq/128/ENVZ_ECOLI_Ghose_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/ENVZ_ECOLI_Ghose_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8223929e60b2013d9ecd8386f541d055e5d10c0e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ENVZ_ECOLI_Ghose_2023.fasta @@ -0,0 +1,2 @@ +>ENVZ_ECOLI_Ghose_2023 +12,112,40,12,112,112,90,90,73,73,90,68,68,68,90,68,73,90,68,73,68,90,18,73,73,17,35,112,112,40,40,30,125,40,40,30,40,35,73,68,73,73,68,73,68,68,90,68,68,90,90,68,68,90,68,18,68,12,32,32 diff --git a/conf/data/proteingym_v1/struc_seq/128/ENV_HV1B9_DuenasDecamp_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/ENV_HV1B9_DuenasDecamp_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e53be275bae64d096ae4cb15569aec579983a186 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ENV_HV1B9_DuenasDecamp_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1B9_DuenasDecamp_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/128/ENV_HV1BR_Haddox_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/ENV_HV1BR_Haddox_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0f8e19221f927c24f49bee6a2e308eb06e30b973 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ENV_HV1BR_Haddox_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1BR_Haddox_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/128/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta b/conf/data/proteingym_v1/struc_seq/128/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4552e4ee82d4a1d974d366d5e01dd05d9893b645 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta @@ -0,0 +1,2 @@ +>EPHB2_HUMAN_Tsuboyama_2023_1F0M +6,110,37,53,71,108,36,75,97,35,97,17,35,17,35,97,67,17,17,17,67,17,17,17,97,112,126,126,83,28,121,124,112,124,112,112,40,125,36,124,28,112,17,124,112,30,30,30,30,40,40,68,40,1,18,90,73,112,68,68,40,73,68,12,68,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/ERBB2_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/ERBB2_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7f2bfb3d8c4852d8a2eb562af803c696f0d75c31 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ERBB2_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>ERBB2_HUMAN_Elazar_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/128/ESTA_BACSU_Nutschel_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/ESTA_BACSU_Nutschel_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ae762ddd49c0aa62db648df503c1a8b8e5a38e97 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ESTA_BACSU_Nutschel_2020.fasta @@ -0,0 +1,2 @@ +>ESTA_BACSU_Nutschel_2020 +12,12,12,12,12,12,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,12,30,30,30,123,121,121,121,121,121,98,60,116,63,20,49,49,3,3,20,102,116,55,4,41,15,33,87,96,67,34,105,75,35,35,112,40,40,30,114,88,88,88,87,102,101,20,113,43,59,19,47,47,31,4,27,45,34,124,83,124,67,17,83,46,17,68,126,96,108,90,46,108,72,39,83,126,118,43,20,20,49,49,49,49,20,20,101,20,20,101,46,101,85,85,67,22,22,67,97,76,22,4,116,102,63,63,63,49,3,49,20,20,101,101,101,22,85,67,22,104,104,116,116,55,4,4,31,2,98,42,116,106,106,106,92,3,3,20,20,113,113,87,95,87,22,47,87,4,22,20,8,102,61,106,92,92,92,49,3,113,3,3,57,87,8,101,118,101,45,93,124,34,36,46,17,68,117,96,17,70,20,20,14,20,118,77,106,64,64,58 diff --git a/conf/data/proteingym_v1/struc_seq/128/F7YBW7_MESOW_Ding_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/F7YBW7_MESOW_Ding_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..81b8f70570981fb335d99c88199669cc982e7756 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/F7YBW7_MESOW_Ding_2023.fasta @@ -0,0 +1,2 @@ +>F7YBW7_MESOW_Ding_2023 +98,24,24,44,24,44,44,44,44,24,114,114,30,30,30,40,12,68,68,70,35,97,35,72,72,72,97,35,72,97,35,40,40,35,68,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,30,30,30,114,37,37,24,44,44,37,114,30,12,12,12,90,90,90,90,90,90,90,30,30,30,114,121,98,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/F7YBW8_MESOW_Aakre_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/F7YBW8_MESOW_Aakre_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..45637de133022de10d969d5841477c3d74e586dc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/F7YBW8_MESOW_Aakre_2015.fasta @@ -0,0 +1,2 @@ +>F7YBW8_MESOW_Aakre_2015 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a/conf/data/proteingym_v1/struc_seq/128/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta b/conf/data/proteingym_v1/struc_seq/128/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d8ee8b856e59f71cdec88842f202570edbdd8acf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta @@ -0,0 +1,2 @@ +>FKBP3_HUMAN_Tsuboyama_2023_2KFV +24,53,24,94,37,9,36,112,94,23,124,9,23,23,121,28,83,124,1,39,105,124,1,40,105,88,78,6,14,33,71,7,76,75,125,35,34,75,67,36,36,124,112,112,36,75,124,112,28,124,40,124,1,40,32,18,18,32,1,35,35,108,78,127,72,110,78,33,59 diff --git a/conf/data/proteingym_v1/struc_seq/128/GAL4_YEAST_Kitzman_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/GAL4_YEAST_Kitzman_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..93442296e5d39b1c2ea4f927b78ccd5cca7c7111 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/GAL4_YEAST_Kitzman_2015.fasta @@ -0,0 +1,2 @@ +>GAL4_YEAST_Kitzman_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/128/GCN4_YEAST_Staller_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/GCN4_YEAST_Staller_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b55887ad8e98be2f1ec978aece07b96184cec160 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/GCN4_YEAST_Staller_2018.fasta @@ -0,0 +1,2 @@ +>GCN4_YEAST_Staller_2018 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b/conf/data/proteingym_v1/struc_seq/128/GDIA_HUMAN_Silverstein_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..da6dec53793b1f5c79a01175ab5f267162e8bfea --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/GDIA_HUMAN_Silverstein_2021.fasta @@ -0,0 +1,2 @@ +>GDIA_HUMAN_Silverstein_2021 +26,122,15,92,92,92,92,81,81,3,113,20,102,45,101,101,14,93,32,101,93,32,46,14,34,124,9,118,20,49,49,81,81,63,106,26,42,26,102,4,116,116,55,19,19,59,19,33,33,33,71,33,71,7,97,119,97,108,7,74,7,71,2,98,6,55,2,33,31,19,4,19,79,120,16,120,19,64,120,64,59,79,82,83,83,40,40,40,35,32,18,127,18,18,34,18,40,75,112,82,16,16,99,16,16,61,106,91,15,99,120,79,55,13,120,15,15,120,120,107,14,1,67,36,94,83,83,23,94,69,69,83,110,114,126,124,112,34,17,124,34,18,73,124,70,112,112,112,75,124,36,23,121,121,121,121,23,94,23,28,23,47,23,31,116,47,107,76,76,71,107,108,125,112,39,112,39,7,126,83,7,97,88,88,76,85,74,87,85,67,85,76,47,33,75,121,9,76,107,107,107,107,88,14,45,105,112,1,105,105,105,14,105,67,83,107,85,97,13,88,102,19,79,16,120,29,59,51,79,64,59,59,78,45,105,105,32,32,45,67,32,45,14,108,46,118,101,3,3,11,52,122,92,15,91,115,115,103,62,5,122,42,42,52,64,106,91,103,115,115,115,25,5,62,62,26,92,63,49,49,49,3,43,120,57,84,118,78,110,53,53,66,66,65,103,99,86,10,10,48,38,48,48,10,53,120,120,41,41,41,120,2,41,116,120,16,91,50,50,80,51,16,16,4,4,55,74,104,111,120,16,51,48,50,50,80,99,120,13,104,116,102,55,79,55,13,55,120,120,10,48,48,10,48,10,10,10,89,37,121,114,53,53,30,110,53,90,108,53,78,125,47,53,33,41,41,89,10,86,10,48,48,38,86,86,65,66,99,120,66,6,13,102,22,104,116,102,63,20,77,77,77,120,120,99,99,120,99,43,57,88,114,88,39,90,36,1,108,14,14,108,7,85,101,36,75,110,7,7,110,124,121,121,28,28,123,121,121,98,98,98,98,98,24,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/GFP_AEQVI_Sarkisyan_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/GFP_AEQVI_Sarkisyan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..41c8e2ec80c9c9bae1e914321f60d7c519837304 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/GFP_AEQVI_Sarkisyan_2016.fasta @@ -0,0 +1,2 @@ +>GFP_AEQVI_Sarkisyan_2016 +83,107,88,107,9,88,9,22,110,6,120,106,91,50,50,50,50,50,50,50,50,15,52,11,52,15,115,50,54,48,38,48,65,91,16,106,102,8,63,106,77,80,38,65,38,48,10,99,99,115,115,115,120,41,33,110,53,53,51,100,7,100,51,51,78,100,53,77,101,102,102,77,102,118,57,94,121,41,47,55,19,13,79,79,27,27,55,27,13,55,120,16,65,65,48,48,48,48,48,80,86,115,41,10,54,48,50,48,38,50,54,16,58,106,15,25,63,26,106,50,91,50,50,50,50,50,50,15,99,53,47,74,100,74,16,33,55,74,4,59,59,58,66,62,21,21,86,38,65,65,65,65,54,66,66,41,2,115,61,16,66,65,65,65,65,38,54,54,0,58,58,58,61,111,58,58,29,65,65,48,48,48,65,48,10,16,120,120,69,69,69,69,102,55,19,58,64,0,54,65,50,65,48,48,38,86,54,38,89,24,24,24,60,60,5,89,86,10,38,65,38,48,50,10,77,99,65,86,41,121,121,28,123,123,123,125,125,125 diff --git a/conf/data/proteingym_v1/struc_seq/128/GLPA_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/GLPA_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8a9ecd9418617cfabb0bb8ae72b8b21aafe0d036 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/GLPA_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>GLPA_HUMAN_Elazar_2016 +12,12,12,12,12,12,90,90,90,90,90,90,90,90,90,90,12,12,30,30,114,37,98,24,44,44,44,44,44,44,44,44,44,44,44,44,44,24,44,24,24,24,24,24,98,98,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,24,44,44,44,24,44,44,44,24,24,24,24,98,98,98,121,121,121,121,121,123,123,30,30,30,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,127,123,123,123,123,123,121,121,98,98,98,121,98,98,121,121,121,121,121,121,98,98,24,24,24,24,24,24,24,24,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/GRB2_HUMAN_Faure_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/GRB2_HUMAN_Faure_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1461435c37c773d6adf8b3e41948e8681e647b13 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/GRB2_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>GRB2_HUMAN_Faure_2021 +89,66,0,29,29,58,61,64,61,5,5,24,42,42,5,62,21,5,62,61,64,64,29,103,0,0,54,29,115,5,60,89,115,41,66,115,58,29,103,0,21,25,55,25,62,103,29,29,115,66,61,58,29,66,86,66,60,42,42,106,77,52,11,15,84,57,78,126,30,53,33,30,71,59,59,107,47,2,42,61,64,64,91,106,50,91,120,120,60,60,41,111,111,115,91,66,80,80,0,120,62,25,69,120,59,99,54,103,103,0,29,58,115,111,55,61,61,59,115,115,115,24,115,115,59,59,66,53,110,114,78,33,76,76,74,74,74,47,47,4,31,60,60,60,42,61,116,116,116,116,116,2,47,121,121,121,98,111,66,0,0,29,29,64,64,61,62,62,5,25,25,5,5,103,21,62,64,64,64,64,29,0,0,0,0,29,62,115,60,111,2,59,58,58,29,54,103,21,25,25,5,62,103,29,29,58,66,61,29,29,16,54,0,115,41,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta b/conf/data/proteingym_v1/struc_seq/128/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0ccbd61accd566d6eee2b4753f94db17c0130881 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta @@ -0,0 +1,2 @@ +>HCP_LAMBD_Tsuboyama_2023_2L6Q +125,40,35,126,14,1,108,82,14,1,70,82,14,108,71,107,67,72,97,107,33,79,79,66,79,33,59,69,111,115,58,115,103,79,82,85,76,112,108,35,30,17,73,90,73,73,73,68,18,73,12,40,39,39,30 diff --git a/conf/data/proteingym_v1/struc_seq/128/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta b/conf/data/proteingym_v1/struc_seq/128/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..751437378094991597931abf15ef7c5f51cbbe6c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta @@ -0,0 +1,2 @@ +>HECD1_HUMAN_Tsuboyama_2023_3DKM +12,12,108,40,12,36,88,30,33,16,64,64,64,64,0,0,80,120,115,115,41,41,2,2,95,95,42,58,31,74,74,104,31,80,0,0,0,29,29,61,58,61,111,58,115,58,0,0,66,0,29,61,116,64,66,0,0,29,58,59,31,31,31,31,31,61,89,80,16,99,38,86 diff --git a/conf/data/proteingym_v1/struc_seq/128/HEM3_HUMAN_Loggerenberg_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/HEM3_HUMAN_Loggerenberg_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..65d8301f8001ab0672ef54b716298ef814fe392e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HEM3_HUMAN_Loggerenberg_2023.fasta @@ -0,0 +1,2 @@ +>HEM3_HUMAN_Loggerenberg_2023 +44,44,44,44,44,44,44,24,24,98,98,98,98,121,121,98,98,42,109,11,109,109,49,3,113,43,84,57,40,112,82,117,39,82,78,108,68,108,108,127,35,112,125,72,35,97,125,119,57,113,113,109,3,81,11,113,57,57,110,23,2,37,121,37,60,110,6,47,23,94,28,28,23,75,75,7,76,88,70,126,96,78,127,125,82,108,72,7,117,113,43,77,77,51,51,51,79,13,13,13,9,9,102,120,41,61,2,43,120,51,79,79,79,79,120,79,33,79,61,64,16,58,99,79,19,43,47,104,31,55,104,42,89,43,69,98,52,43,52,52,63,109,92,11,11,84,84,27,102,102,101,27,27,27,75,9,67,9,88,118,87,63,3,11,11,11,69,110,110,126,70,126,6,118,70,88,8,47,23,23,104,8,63,63,77,92,77,51,16,79,4,107,14,97,34,17,72,72,97,23,4,19,120,120,29,58,62,26,13,13,4,120,120,19,82,79,79,19,79,51,16,77,51,51,79,79,110,82,112,40,83,82,1,14,46,27,101,13,13,79,4,13,79,27,45,45,45,93,93,45,45,93,45,45,45,32,105,105,14,47,94,27,27,102,79,16,16,99,80,86,66,115,111,5,89,79,10,80,38,80,80,79,79,27,27,27,85,9,102,79,51,80,10,38,10,10,59,120,13,55,13,13,55,61,19,61,55,111,2,69,60,60,98,104,27,27,102,79,87,102,55,55,13,4,71,126,9,45,105,105,45,93,93,45,124,18,105,82,1,17,114,78,39,127,125,126,82,1,108,107,107,108,108,14,83,70,70,1,39,39,1 diff --git a/conf/data/proteingym_v1/struc_seq/128/HIS7_YEAST_Pokusaeva_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/HIS7_YEAST_Pokusaeva_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..10d002b3d6ad1c6167b1f4536357f23e9fee7c60 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HIS7_YEAST_Pokusaeva_2019.fasta @@ -0,0 +1,2 @@ +>HIS7_YEAST_Pokusaeva_2019 +98,94,13,13,51,79,80,51,66,10,66,5,5,6,53,89,10,99,10,99,10,77,27,79,106,26,26,15,122,21,24,24,25,25,25,24,24,98,98,60,24,69,69,88,120,15,15,26,5,106,26,15,15,15,87,87,88,9,9,23,14,124,88,124,32,45,101,32,105,101,101,105,105,101,102,15,77,50,77,15,10,53,6,53,107,119,119,119,9,83,76,27,45,105,45,45,32,105,27,82,105,14,79,27,45,27,33,27,13,6,19,19,31,4,4,4,19,51,51,51,51,51,16,43,116,61,59,16,16,51,51,80,51,16,79,120,102,102,101,20,20,92,113,11,87,69,94,94,69,111,47,13,47,47,107,107,88,71,105,45,83,105,32,101,101,45,45,101,101,45,45,101,101,77,77,50,77,77,77,80,16,79,6,6,94,13,33,79,45,27,79,79,45,27,79,79,27,79,51,79,27,79,19,4,4,4,19,31,31,19,31,31,31,13,98,98,60,55,47,55 diff --git a/conf/data/proteingym_v1/struc_seq/128/HMDH_HUMAN_Jiang_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/HMDH_HUMAN_Jiang_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a89693b1d83f1039428141bbdb845f4a18e7f5ed --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HMDH_HUMAN_Jiang_2019.fasta @@ -0,0 +1,2 @@ +>HMDH_HUMAN_Jiang_2019 +12,39,34,32,32,34,32,18,32,93,93,93,93,93,32,32,1,1,35,1,39,68,68,39,73,90,90,73,73,90,73,73,17,40,36,114,114,114,121,37,98,60,60,95,95,95,60,41,41,41,60,98,98,98,121,121,123,123,30,30,127,39,68,90,18,32,32,18,32,32,73,73,32,73,68,39,73,90,68,73,68,90,17,17,40,40,40,70,30,39,39,17,90,32,32,68,68,18,32,90,18,18,32,18,18,32,32,32,32,1,112,112,40,30,23,23,28,28,28,112,17,1,32,93,93,32,93,93,93,93,93,34,105,1,39,40,93,73,18,32,32,93,32,93,45,124,124,94,36,112,36,112,32,93,93,93,93,93,93,93,32,18,124,1,32,18,17,68,68,18,32,18,32,32,32,18,18,32,18,32,32,17,17,34,112,112,112,112,40,35,17,32,93,34,32,32,32,32,32,93,93,32,18,93,1,18,17,34,105,93,1,93,93,32,93,32,32,73,68,18,39,90,90,114,30,114,37,37,24,44,24,69,94,121,28,28,72,72,35,35,72,114,114,114,121,98,2,2,110,114,30,12,12,68,90,90,18,18,90,73,18,73,68,68,73,90,68,68,90,90,68,70,12,30,114,37,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,25,25,21,115,115,115,2,121,98,114,114,114,30,30,30,30,127,12,12,12,30,30,30,114,40,1,112,30,18,18,68,90,73,73,90,90,17,35,127,35,35,72,72,72,72,72,30,90,68,90,12,12,30,30,114,37,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,44,44,24,44,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,24,44,122,25,42,122,25,60,69,94,36,40,70,30,126,7,70,7,71,23,74,47,47,74,47,23,104,104,104,110,17,36,36,67,17,75,35,17,35,72,72,97,72,72,34,124,75,67,83,23,9,76,83,108,75,75,124,105,85,105,32,34,67,32,68,34,97,97,28,28,23,28,75,28,75,22,75,74,69,60,94,95,98,94,94,74,74,47,47,119,119,47,6,95,2,9,9,9,13,5,122,5,62,62,16,16,16,27,79,19,27,118,79,77,52,52,55,79,19,79,79,79,79,59,41,47,28,28,27,79,22,105,45,27,105,93,45,45,45,27,27,107,82,102,4,79,77,10,10,10,65,64,64,91,16,120,33,80,51,80,80,16,59,31,33,33,126,33,78,78,90,39,78,70,17,112,36,40,40,35,35,36,70,73,1,82,105,18,14,14,14,124,9,121,59,79,59,79,0,80,10,10,80,10,10,51,59,51,66,80,10,80,80,80,0,16,64,19,19,19,4,55,55,117,70,107,79,14,1,14,45,1,18,18,14,18,73,32,70,127,17,112,36,94,82,51,51,80,120,33,16,16,59,10,51,47,102,88,9,85,9,85,74,102,102,22,118,19,19,19,19,19,80,48,10,48,51,80,79,79,79,107,107,27,74,76,105,105,85,67,14,79,82,1,14,82,108,17,14,76,72,97,88,76,97,97,100,97,72,125,125,97,22,4,13,13,27,14,14,14,112,14,105,93,14,79,14,27,27,79,27,9,9,27,14,85,27,45,27,27,27,45,27,79,79,16,80,51,51,51,16,120,2,13,55,4,79,16,80,48,48,10,80,16,16,4,102,102,27,4,4,4,104,104,22,22,107,83,39,67,14,85,14,82,45,7,107,45,124,85,85,13,19,4,33,2,33,33,4,107,107,4,79,83,14,82,78,83,1,82,82,45,45,82,45,32,45,93,32,93,105,105,34,1,34,124,72,72,127,127,72,97,28,40,28,28,23,121,121,121,121,121,30,30,114,114,114,114,121,98,98,98,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta b/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta new file mode 100644 index 0000000000000000000000000000000000000000..315a4d3c872679c144877b271674b15caf063b87 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2 +44,44,44,44,44,44,44,44,44,37,114,94,112,30,126,105,67,72,85,124,75,119,22,9,23,23,83,124,124,34,34,105,1,1,82,14,14,82,118,107,107,71,71,108,14,67,97,35,35,35,127,35,35,72,97,85,75,9,13,88,6,43,106,91,50,50,50,53,51,88,23,94,79,51,51,38,48,80,16,19,59,33,19,59,6,41,100,100,53,119,119,74,74,94,22,9,47,47,47,83,36,114,114,30,110,30,30,121,98,98,24,24,60,94,69,83,13,9,2,47,47,27,45,105,93,105,45,27,107,107,79,31,16,80,48,48,54,99,62,26,104,116,89,26,62,99,54,80,65,66,89,9,9,9,69,89,86,54,103,66,103,25,24,25,24,115,62,55,55,64,29,65,48,48,80,79,82,33,47,110,83,107,40,124,88,112,88,127,35,1,67,34,17,105,85,88,107,14,22,104,13,87,102,106,106,50,50,86,54,103,54,103,103,103,29,103,29,115,59,6,126,30,30,126,90,90,90,90,90,12,12,30,30,114,37,98,24,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,111,111,58,62,29,103,29,103,103,103,54,103,54,50,50,91,79,55,55,9,23,47,13,89,2,121,37,69,98,37,23,30,6,71,36,82,71,108,83,33,7,97,118,118,119,95,110,47,33,31,19,79,10,51,80,80,54,115,21,44,25,89,21,99,54,50,10,80,16,120,120,116,4,47,104,95,121,9,23,121,121,98,121,23,9,13,102,77,106,106,91,52,122,43,43,106,106,120,102,13,13,45,85,76,85,28,75,97,83,22,102,43,77,50,77,50,91,91,122,89,26,42,42,55,13,13,102,69,95,47,2,6,75,30,85,85,1,39,46,67,39,70,117,70,68,70,126,68,68,126,18,73,39,39,73,39,68,68,68,39,73,97,67,85,97,67,76,14,97,34,32,34,105,93,34,34,105,124,67,97,97,17,67,100,17,17,85,108,105,107,59,91,58,77,96,53,120,61,42,61,62,59,33,33,110,126,78,110,114,126,110,2,98,60,69,52,52,63,49,3,3,87,101,87,57,57,57,87,87,110,28,107,27,27,118,83,76,88,7,7,110,110,88,96,77,106,77,52,43,87,46,124,45,101,124,34,85,14,75,85,111,52,118,22,116,52,52,52,11,113,63,52,120,122,122,25,69,69,94,110,30,30,40,40,12,68,70,68,90,70,40,70,39,108,108,17,1,118,108,105,45,9,67,34,9,125,74,8,96,106,8,96,77,96,77,118,87,43,4,4,19,43,43,79,77,106,120,26,5,26,116,33,102,79,118,108,88,88,40,75,36,30,121,98,98,121,121,28,125,100,75,125,110,6,31,116,64,106,92,77,92,43,84,118,47,110,30,71,83,40,68,18,39,97,97,67,67,7,28,97,34,124,28,30,35,34,34,73,73,18,18,68,70,78,76,118,33,82,74,118,102,22,71,23,119,121,114,114,30,30,70,70,90,68,90,90,90,68,127,127,127,127,72,72,123,121,121,98,98,98,98,98,98,98,98,24,24,24,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Flynn_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Flynn_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f75e3a3b5cebc76d9001966293cc3bb1a1d4604f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Flynn_2019.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Flynn_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Mishra_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Mishra_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2b81a8534c94b9bafd5565e1fe741260408f2578 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HSP82_YEAST_Mishra_2016.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Mishra_2016 +44,44,44,44,44,44,44,44,44,37,114,94,112,30,126,105,67,72,85,124,75,119,22,9,23,23,83,124,124,34,34,105,1,1,82,14,14,82,118,107,107,71,71,108,14,67,97,35,35,35,127,35,35,72,97,85,75,9,13,88,6,43,106,91,50,50,50,53,51,88,23,94,79,51,51,38,48,80,16,19,59,33,19,59,6,41,100,100,53,119,119,74,74,94,22,9,47,47,47,83,36,114,114,30,110,30,30,121,98,98,24,24,60,94,69,83,13,9,2,47,47,27,45,105,93,105,45,27,107,107,79,31,16,80,48,48,54,99,62,26,104,116,89,26,62,99,54,80,65,66,89,9,9,9,69,89,86,54,103,66,103,25,24,25,24,115,62,55,55,64,29,65,48,48,80,79,82,33,47,110,83,107,40,124,88,112,88,127,35,1,67,34,17,105,85,88,107,14,22,104,13,87,102,106,106,50,50,86,54,103,54,103,103,103,29,103,29,115,59,6,126,30,30,126,90,90,90,90,90,12,12,30,30,114,37,98,24,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,111,111,58,62,29,103,29,103,103,103,54,103,54,50,50,91,79,55,55,9,23,47,13,89,2,121,37,69,98,37,23,30,6,71,36,82,71,108,83,33,7,97,118,118,119,95,110,47,33,31,19,79,10,51,80,80,54,115,21,44,25,89,21,99,54,50,10,80,16,120,120,116,4,47,104,95,121,9,23,121,121,98,121,23,9,13,102,77,106,106,91,52,122,43,43,106,106,120,102,13,13,45,85,76,85,28,75,97,83,22,102,43,77,50,77,50,91,91,122,89,26,42,42,55,13,13,102,69,95,47,2,6,75,30,85,85,1,39,46,67,39,70,117,70,68,70,126,68,68,126,18,73,39,39,73,39,68,68,68,39,73,97,67,85,97,67,76,14,97,34,32,34,105,93,34,34,105,124,67,97,97,17,67,100,17,17,85,108,105,107,59,91,58,77,96,53,120,61,42,61,62,59,33,33,110,126,78,110,114,126,110,2,98,60,69,52,52,63,49,3,3,87,101,87,57,57,57,87,87,110,28,107,27,27,118,83,76,88,7,7,110,110,88,96,77,106,77,52,43,87,46,124,45,101,124,34,85,14,75,85,111,52,118,22,116,52,52,52,11,113,63,52,120,122,122,25,69,69,94,110,30,30,40,40,12,68,70,68,90,70,40,70,39,108,108,17,1,118,108,105,45,9,67,34,9,125,74,8,96,106,8,96,77,96,77,118,87,43,4,4,19,43,43,79,77,106,120,26,5,26,116,33,102,79,118,108,88,88,40,75,36,30,121,98,98,121,121,28,125,100,75,125,110,6,31,116,64,106,92,77,92,43,84,118,47,110,30,71,83,40,68,18,39,97,97,67,67,7,28,97,34,124,28,30,35,34,34,73,73,18,18,68,70,78,76,118,33,82,74,118,102,22,71,23,119,121,114,114,30,30,70,70,90,68,90,90,90,68,127,127,127,127,72,72,123,121,121,98,98,98,98,98,98,98,98,24,24,24,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/HXK4_HUMAN_Gersing_2022_activity.fasta b/conf/data/proteingym_v1/struc_seq/128/HXK4_HUMAN_Gersing_2022_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c00d11648cf40e4dfd3cf78033785705b0fd57b6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HXK4_HUMAN_Gersing_2022_activity.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2022_activity +12,12,12,12,12,12,12,90,73,90,68,18,73,90,68,18,18,90,68,18,112,124,124,45,124,36,124,40,124,93,32,73,32,32,18,32,18,73,18,14,105,45,76,85,27,85,76,76,76,76,23,85,67,45,83,27,79,79,79,16,64,16,16,79,27,14,94,55,79,82,59,64,91,16,77,77,77,77,15,122,55,55,21,103,10,10,10,50,80,54,0,103,115,115,111,111,111,111,115,115,103,86,54,86,48,89,38,53,89,33,74,22,22,76,22,22,22,76,85,105,46,85,32,34,17,105,39,73,126,78,108,70,78,7,70,72,7,72,74,118,8,8,109,109,63,49,20,20,20,63,52,42,64,64,64,61,19,61,102,102,58,58,58,61,61,61,5,60,69,13,104,104,22,104,104,104,42,61,79,59,79,33,78,34,34,75,18,18,112,36,17,75,28,83,118,8,63,49,49,101,101,20,101,106,102,16,79,27,101,79,45,14,101,27,14,97,118,88,96,20,102,77,77,77,106,102,43,102,102,79,79,51,51,80,16,51,59,59,111,4,55,88,94,88,37,37,2,111,58,58,58,16,16,16,79,79,27,107,27,45,105,85,85,97,97,97,100,119,9,67,112,112,39,1,9,14,105,76,23,74,47,2,2,23,22,107,27,85,27,27,14,45,45,27,27,107,107,45,14,14,105,32,105,18,18,1,67,17,34,75,75,34,124,105,124,13,13,75,9,9,94,47,23,83,124,9,14,14,45,1,108,14,14,105,93,124,105,1,124,9,112,28,112,28,112,112,112,1,108,97,1,105,125,40,83,36,88,71,83,88,83,1,83,112,39,18,32,18,32,32,32,93,32,93,93,105,93,93,93,93,93,93,32,93,93,105,32,32,124,46,39,68,71,117,125,7,7,125,96,8,8,96,49,49,49,77,20,3,20,43,102,27,87,95,76,67,28,105,105,97,97,105,34,124,18,93,105,75,34,105,46,101,96,87,3,3,81,109,3,3,20,87,46,82,101,51,79,14,20,77,79,101,101,82,83,14,112,70,90,68,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/HXK4_HUMAN_Gersing_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/128/HXK4_HUMAN_Gersing_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fbefe975d183b8510623c506218b426dc91745c4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/HXK4_HUMAN_Gersing_2023_abundance.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2023_abundance +12,12,12,12,12,12,12,90,73,90,68,18,73,90,68,18,18,90,68,18,112,124,124,45,124,36,124,40,124,93,32,73,32,32,18,32,18,73,18,14,105,45,76,85,27,85,76,76,76,76,23,85,67,45,83,27,79,79,79,16,64,16,16,79,27,14,94,55,79,82,59,64,91,16,77,77,77,77,15,122,55,55,21,103,10,10,10,50,80,54,0,103,115,115,111,111,111,111,115,115,103,86,54,86,48,89,38,53,89,33,74,22,22,76,22,22,22,76,85,105,46,85,32,34,17,105,39,73,126,78,108,70,78,7,70,72,7,72,74,118,8,8,109,109,63,49,20,20,20,63,52,42,64,64,64,61,19,61,102,102,58,58,58,61,61,61,5,60,69,13,104,104,22,104,104,104,42,61,79,59,79,33,78,34,34,75,18,18,112,36,17,75,28,83,118,8,63,49,49,101,101,20,101,106,102,16,79,27,101,79,45,14,101,27,14,97,118,88,96,20,102,77,77,77,106,102,43,102,102,79,79,51,51,80,16,51,59,59,111,4,55,88,94,88,37,37,2,111,58,58,58,16,16,16,79,79,27,107,27,45,105,85,85,97,97,97,100,119,9,67,112,112,39,1,9,14,105,76,23,74,47,2,2,23,22,107,27,85,27,27,14,45,45,27,27,107,107,45,14,14,105,32,105,18,18,1,67,17,34,75,75,34,124,105,124,13,13,75,9,9,94,47,23,83,124,9,14,14,45,1,108,14,14,105,93,124,105,1,124,9,112,28,112,28,112,112,112,1,108,97,1,105,125,40,83,36,88,71,83,88,83,1,83,112,39,18,32,18,32,32,32,93,32,93,93,105,93,93,93,93,93,93,32,93,93,105,32,32,124,46,39,68,71,117,125,7,7,125,96,8,8,96,49,49,49,77,20,3,20,43,102,27,87,95,76,67,28,105,105,97,97,105,34,124,18,93,105,75,34,105,46,101,96,87,3,3,81,109,3,3,20,87,46,82,101,51,79,14,20,77,79,101,101,82,83,14,112,70,90,68,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/I6TAH8_I68A0_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/I6TAH8_I68A0_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b4e5554fabd3746ef18c73d21c74020526cd8ea8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/I6TAH8_I68A0_Doud_2015.fasta @@ -0,0 +1,2 @@ +>I6TAH8_I68A0_Doud_2015 +44,44,44,44,44,44,24,98,98,98,98,98,98,98,24,24,44,44,60,37,114,107,71,14,107,14,14,14,105,108,105,32,93,93,93,93,32,93,93,93,32,18,34,34,40,72,97,126,36,119,28,43,87,14,82,79,14,27,118,1,83,71,14,18,1,82,93,32,83,14,18,68,127,127,68,97,35,35,125,97,97,125,119,119,24,98,98,53,88,13,79,79,16,66,115,59,58,58,115,115,25,25,111,115,58,103,103,103,103,103,51,82,82,83,112,14,73,70,18,34,105,93,34,93,124,72,75,35,34,34,18,18,32,17,1,18,32,45,45,105,105,45,45,9,45,45,27,102,118,76,71,74,85,14,7,67,105,105,105,1,85,27,45,27,27,107,45,27,14,107,14,14,23,121,28,112,112,34,108,83,9,9,27,45,107,14,14,14,105,93,105,32,32,1,73,1,112,108,35,67,75,72,72,7,100,67,76,100,100,75,100,97,97,97,97,17,90,68,73,73,68,18,32,73,18,45,1,82,27,27,13,82,112,112,93,34,17,32,32,18,17,112,34,124,36,9,9,124,112,108,36,112,1,108,32,32,1,32,93,1,34,93,27,45,79,27,55,4,19,19,19,19,79,27,45,45,93,93,45,45,105,32,14,124,1,67,125,125,97,112,14,14,45,27,14,83,107,79,19,33,33,74,107,13,71,14,9,88,9,9,27,79,79,102,77,89,115,5,42,6,6,13,9,9,13,88,45,45,45,45,45,45,45,27,27,27,27,27,4,4,107,33,6,107,4,59,19,4,4,4,7,14,4,55,55,42,55,13,88,88,55,55,13,6,89,24,25,24,2,60,66,5,61,62,16,50,77,77,82,79,46,22,4,19,19,19,64,64,58,64,19,19,19,19,5,19,120,120,120,84,84,31,33,55,55,4,79,19,19,19,19,19,61,64,120,19,120,16,19,120,104,43,110,110,83,1,30,40,112,28,121,121,121,121,23,28,121,30,40,68,32,68,68,32,73,12,82,82,82,79,120,26,62,5,26,58,19,120,120,106,26,26,64,19,59,33,23,47,23,23,55,95,42,42,26,5,42,60,60,60,69,2,41,2,55,79,19,19,102,102,79,42,42,42,95,57,57,104 diff --git a/conf/data/proteingym_v1/struc_seq/128/IF1_ECOLI_Kelsic_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/IF1_ECOLI_Kelsic_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8d7d1dd180685f75d9f8f1c8ed7f49c3ddcd61fb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/IF1_ECOLI_Kelsic_2016.fasta @@ -0,0 +1,2 @@ +>IF1_ECOLI_Kelsic_2016 +37,119,98,95,31,58,58,103,0,0,0,0,103,29,103,103,115,25,25,5,15,62,0,0,0,103,58,115,115,61,58,91,91,91,15,84,113,117,119,37,114,72,125,125,37,37,120,62,62,62,103,103,0,0,0,91,91,58,31,2,111,26,52,91,91,50,91,91,15,103,54,103 diff --git a/conf/data/proteingym_v1/struc_seq/128/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta b/conf/data/proteingym_v1/struc_seq/128/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a8997cba3f36f6793ab89af933c052af133e32c6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta @@ -0,0 +1,2 @@ +>ILF3_HUMAN_Tsuboyama_2023_2L33 +4,4,14,47,2,2,110,107,108,1,67,14,76,75,125,7,114,119,60,89,86,10,38,38,38,86,86,21,115,89,24,60,25,89,89,66,66,66,10,10,66,53,42,25,60,115,51,51,51,51,51,10,77,80,6,6,51,51,82,82,51,82,107,107,88,67,7,7,7,125,100 diff --git a/conf/data/proteingym_v1/struc_seq/128/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta b/conf/data/proteingym_v1/struc_seq/128/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..69c13bf9e50b798641c0ac2cba2b9c1d06d2e226 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta @@ -0,0 +1,2 @@ +>ISDH_STAAW_Tsuboyama_2023_2LHR +30,125,125,72,72,97,35,35,34,17,124,75,112,83,28,40,40,40,34,17,1,18,34,73,35,34,97,97,112,112,28,28,30,97,35,72,127,35,73,68,73,73,73,68,73,73,68,68,68,68,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/KCNE1_HUMAN_Muhammad_2023_expression.fasta b/conf/data/proteingym_v1/struc_seq/128/KCNE1_HUMAN_Muhammad_2023_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e3f471eee9570bc52fc58457ffccaf11490e55a0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/KCNE1_HUMAN_Muhammad_2023_expression.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_expression +98,98,98,121,123,123,123,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,72,123,121,121,98,98,121,121,123,114,30,127,90,90,90,90,90,127,127,127,127,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,12,30,30,30,28,121,28,123,28,123,123,123,123,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,30,30,114,114,37,98,98,98,121,121,121,123,121,121,121,98,98,98,24,24,24,24,24,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/KCNE1_HUMAN_Muhammad_2023_function.fasta b/conf/data/proteingym_v1/struc_seq/128/KCNE1_HUMAN_Muhammad_2023_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..91a5d1f299f1b25fec857acaee201b93d5a3707c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/KCNE1_HUMAN_Muhammad_2023_function.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_function +98,98,98,121,123,123,123,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,72,123,121,121,98,98,121,121,123,114,30,127,90,90,90,90,90,127,127,127,127,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,12,30,30,30,28,121,28,123,28,123,123,123,123,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,30,30,114,114,37,98,98,98,121,121,121,123,121,121,121,98,98,98,24,24,24,24,24,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/KCNH2_HUMAN_Kozek_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/KCNH2_HUMAN_Kozek_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cd914fedef518a0ed70490f336033409661a5ea3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/KCNH2_HUMAN_Kozek_2020.fasta @@ -0,0 +1,2 @@ +>KCNH2_HUMAN_Kozek_2020 +114,94,83,13,13,69,13,69,94,94,75,75,36,28,70,127,90,70,126,90,70,126,126,127,125,36,6,53,66,66,99,16,58,59,58,58,2,4,59,31,58,29,58,66,6,53,36,53,110,74,74,33,74,126,7,110,121,121,59,58,19,47,31,79,23,47,94,2,59,59,115,89,103,66,53,126,126,78,71,39,126,78,68,70,110,108,35,126,59,6,66,59,0,51,0,66,0,29,58,31,31,31,61,61,115,62,0,103,54,0,65,80,80,16,16,19,42,104,116,116,19,58,64,58,0,65,65,65,65,0,103,54,21,21,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,122,122,44,44,44,44,44,44,44,44,44,44,122,44,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,56,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,37,37,37,30,127,127,90,90,90,90,90,127,72,125,28,28,28,23,13,104,104,47,13,9,94,94,69,60,69,55,60,52,102,104,43,57,94,117,72,125,70,72,90,90,68,90,90,18,73,90,73,18,32,35,73,32,32,17,73,34,105,34,34,34,1,97,97,28,28,28,28,114,37,37,98,24,24,98,98,98,121,28,121,28,30,30,127,127,90,68,90,90,73,18,68,73,18,73,68,73,73,90,108,46,14,101,22,102,79,55,55,13,13,69,69,55,106,43,43,107,1,36,46,112,39,7,39,72,30,72,72,70,72,17,17,34,112,34,34,34,112,112,40,28,121,28,28,121,121,114,114,40,18,127,40,18,73,73,34,18,34,105,17,18,32,73,17,32,73,127,127,35,127,72,36,40,40,36,112,73,73,68,73,73,68,68,73,68,68,18,73,73,73,32,18,32,93,32,32,93,32,32,1,39,1,70,40,12,126,28,30,114,121,121,98,94,47,83,14,14,71,71,107,71,71,108,71,7,33,33,33,41,2,2,111,2,41,4,33,78,126,126,126,14,32,1,18,32,32,32,124,32,93,67,67,34,34,34,72,100,119,95,9,83,13,71,33,33,126,108,108,40,70,73,32,73,68,32,18,18,18,18,73,68,73,68,90,68,73,90,90,18,73,90,68,73,73,90,68,35,127,127,35,35,90,127,73,90,90,68,68,90,90,68,73,90,127,40,72,127,125,125,30,30,30,30,30,40,12,70,68,73,90,12,73,73,12,125,35,35,72,125,112,112,40,28,30,30,114,40,40,40,40,40,40,40,40,40,18,34,18,18,34,18,17,97,1,17,76,88,97,100,23,13,9,83,107,9,23,83,30,40,112,40,105,1,32,93,1,93,9,82,51,48,48,10,58,59,64,64,16,99,80,29,29,64,64,64,64,29,66,16,66,38,50,99,16,29,64,29,29,54,29,29,26,42,115,58,115,115,21,54,99,29,62,120,106,15,15,106,106,87,94,75,119,95,37,53,120,58,64,64,64,64,29,0,0,99,29,62,62,64,0,99,48,48,51,59,53,108,108,83,70,68,17,73,127,35,40,127,72,112,39,72,39,83,112,83,88,107,102,15,122,122,52,64,64,19,2,98,2,2,121,98,98,98,98,24,24,24,44,24,44,44,44,44,44,44,44,44,44,44,44,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,21,21,21,21,25,122,122,122,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,122,25,21,21,21,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,98,98,98,121,37,98,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,98,121,114,30,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,12,30,30,30,37,37,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta b/conf/data/proteingym_v1/struc_seq/128/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9a16201aebc09791fa8bd83ce16a484a6d7c9903 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_function +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,24,98,98,121,121,123,123,121,23,23,2,42,60,89,120,120,58,120,61,16,61,61,111,25,44,24,24,98,98,121,123,30,30,72,72,127,127,127,127,127,18,17,35,34,112,75,112,112,112,30,40,39,70,90,68,68,90,90,68,73,68,90,18,18,32,73,32,18,18,32,18,39,35,39,76,97,127,28,28,23,23,28,121,121,98,98,121,60,2,47,33,59,4,82,75,97,1,1,112,1,18,124,14,32,32,97,124,34,34,97,72,125,119,95,2,23,31,59,41,47,2,71,40,35,40,126,90,73,18,18,73,18,18,73,73,73,68,90,73,68,90,73,68,90,73,18,73,39,39,28,40,30,36,110,110,28,6,6,107,6,120,16,99,99,106,91,50,50,99,62,115,99,25,25,41,16,103,0,54,50,38,48,99,115,120,61,60,41,41,16,29,29,0,16,10,99,65,54,65,65,103,103,115,58,111,111,111,111,111,115,115,103,54,103,103,54,103,66,41,61,47,95,123,123,23,47,55,41,120,5,62,5,61,120,38,38,48,66,16,16,59,47,23,2,2,95,104,23,22,107,107,6,33,13,94,36,75,13,13,10,10,80,65,48,48,38,80,99,66,59,19,31,2,31,55,59,51,80,10,99,99,99,77,10,43,55,77,106,91,106,91,15,15,99,41,61,55,115,103,21,21,25,25,25,21,103,59,59,33,74,31,55,55,120,64,62,91,120,31,41,41,59,33,33,107,33,71,71,71,70,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,30,30,30,114,98,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta b/conf/data/proteingym_v1/struc_seq/128/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta new file mode 100644 index 0000000000000000000000000000000000000000..610e95335d2cd966dc5a2ade8f35162a18dc6219 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_surface +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,24,98,98,121,121,123,123,121,23,23,2,42,60,89,120,120,58,120,61,16,61,61,111,25,44,24,24,98,98,121,123,30,30,72,72,127,127,127,127,127,18,17,35,34,112,75,112,112,112,30,40,39,70,90,68,68,90,90,68,73,68,90,18,18,32,73,32,18,18,32,18,39,35,39,76,97,127,28,28,23,23,28,121,121,98,98,121,60,2,47,33,59,4,82,75,97,1,1,112,1,18,124,14,32,32,97,124,34,34,97,72,125,119,95,2,23,31,59,41,47,2,71,40,35,40,126,90,73,18,18,73,18,18,73,73,73,68,90,73,68,90,73,68,90,73,18,73,39,39,28,40,30,36,110,110,28,6,6,107,6,120,16,99,99,106,91,50,50,99,62,115,99,25,25,41,16,103,0,54,50,38,48,99,115,120,61,60,41,41,16,29,29,0,16,10,99,65,54,65,65,103,103,115,58,111,111,111,111,111,115,115,103,54,103,103,54,103,66,41,61,47,95,123,123,23,47,55,41,120,5,62,5,61,120,38,38,48,66,16,16,59,47,23,2,2,95,104,23,22,107,107,6,33,13,94,36,75,13,13,10,10,80,65,48,48,38,80,99,66,59,19,31,2,31,55,59,51,80,10,99,99,99,77,10,43,55,77,106,91,106,91,15,15,99,41,61,55,115,103,21,21,25,25,25,21,103,59,59,33,74,31,55,55,120,64,62,91,120,31,41,41,59,33,33,107,33,71,71,71,70,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,30,30,30,114,98,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/KKA2_KLEPN_Melnikov_2014.fasta b/conf/data/proteingym_v1/struc_seq/128/KKA2_KLEPN_Melnikov_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8af1bd70b7cd29aa7fbdc39ebb4c1644874e4ad1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/KKA2_KLEPN_Melnikov_2014.fasta @@ -0,0 +1,2 @@ +>KKA2_KLEPN_Melnikov_2014 +44,98,98,98,121,121,98,98,121,121,23,60,121,28,28,121,123,100,53,74,41,115,103,103,86,54,54,21,89,24,98,60,25,89,86,54,54,54,0,103,5,25,24,115,115,103,0,65,65,65,10,89,89,41,2,121,119,94,83,53,78,39,108,82,108,14,71,126,40,78,114,30,36,114,71,43,120,120,120,59,54,89,66,89,99,41,61,5,89,66,86,10,80,54,103,103,62,26,61,31,19,79,13,31,55,94,83,36,83,1,112,45,32,32,45,105,18,18,14,105,14,39,107,33,33,71,33,59,2,47,79,13,79,77,51,43,88,30,30,112,34,90,17,32,18,73,17,112,35,72,112,124,124,94,47,94,47,47,83,121,121,23,95,74,23,7,112,70,30,39,18,90,73,18,34,40,112,124,9,69,42,42,91,43,59,79,79,79,13,22,107,107,107,19,19,19,19,19,5,5,55,13,55,64,64,19,55,107,107,83,13,79,16,59,16,79,27,83,85,85,45,105,67,105,105,85,85,105,97,67,105,67,67,97,72,34,17,67,93,32,105,67,34,34,75,125,119,95,75,75,112,124,124,17,32,32,32,18,1,93,45,124,93,45 diff --git a/conf/data/proteingym_v1/struc_seq/128/LGK_LIPST_Klesmith_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/LGK_LIPST_Klesmith_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..68802bb1fb28e6bdb84ef42fc1ec216b1d538434 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/LGK_LIPST_Klesmith_2015.fasta @@ -0,0 +1,2 @@ +>LGK_LIPST_Klesmith_2015 +24,98,98,98,121,121,121,121,13,13,79,79,16,16,91,77,77,77,77,51,120,84,47,107,6,55,58,58,66,80,80,0,80,0,65,54,91,58,58,61,55,26,26,15,91,50,99,86,54,103,80,66,0,59,58,33,33,126,30,39,126,70,68,1,18,12,36,75,97,36,9,125,125,114,30,30,30,108,70,90,1,107,108,1,85,108,1,85,82,67,39,78,82,39,127,78,126,72,70,119,125,7,125,76,9,52,106,20,77,77,77,77,77,52,102,55,79,55,55,5,5,5,42,60,25,25,60,25,55,55,55,61,42,102,118,27,102,79,85,101,27,27,105,85,101,102,102,77,77,106,120,79,79,79,59,33,107,107,6,82,82,13,107,87,120,88,53,53,13,76,51,120,43,13,106,26,26,42,26,26,26,92,50,92,92,77,19,43,33,19,106,91,77,50,50,16,64,61,42,42,42,42,116,116,116,5,5,120,120,10,122,99,51,79,33,27,107,27,67,105,85,14,105,14,71,1,39,36,125,7,119,7,76,76,14,107,28,105,124,124,85,85,101,101,22,46,117,108,70,1,39,40,68,34,39,72,28,28,69,88,119,94,57,84,122,52,120,120,41,22,94,95,107,67,17,39,39,18,73,90,18,73,35,73,39,40,12,125,30,117,71,14,46,46,105,105,85,105,105,105,105,67,14,1,32,39,14,17,17,88,83,75,119,119,53,41,2,104,63,63,63,81,92,3,3,113,43,102,118,8,88,67,35,34,1,97,97,17,17,97,35,35,46,125,96,96,109,3,3,113,113,57,104,104,55,87,71,57,43,53,82,13,51,51,108,77,51,82,79,20,79,9,79,45,85,87,102,26,55,55,120,120,55,122,89,41,41,115,61,26,55,79,79,79,16,77,16,79,118,76,22,82,126,68,85,67,112,9,9,45,9,27,102,47,98,2,84,42,52,63,26,116,102,106,106,15,15,15,122,25,122,15,15,61,58,55,25,122,25 diff --git a/conf/data/proteingym_v1/struc_seq/128/LYAM1_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/LYAM1_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..28726c33f15c8dde6d626df6f6ea52b010b1329b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/LYAM1_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>LYAM1_HUMAN_Elazar_2016 +44,44,44,44,44,44,24,24,98,114,30,30,30,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,127,127,123,88,55,120,16,91,99,99,10,15,86,80,16,79,79,59,82,71,16,4,71,33,4,118,71,118,43,59,4,79,120,116,6,69,6,71,126,36,118,108,40,46,118,88,88,89,69,42,61,26,29,26,99,16,64,64,29,58,58,58,111,111,115,58,58,58,58,19,55,19,41,115,58,61,5,111,6,26,116,120,116,52,84,122,41,2,104,31,104,95,31,31,58,58,0,15,106,61,55,31,31,95,31,116,102,118,116,26,120,29,59,61,58,61,16,16,64,99,16,91,120,16,120,29,16,120,95,95,69,19,19,4,104,19,61,61,58,103,62,120,43,16,26,19,64,64,64,19,19,19,19,19,61,5,55,19,19,55,31,19,116,116,116,26,5,25,21,15,15,26,64,91,62,54,86,38,89,89,89,61,61,5,64,116,116,64,99,80,80,86,99,91,29,64,64,19,64,64,0,54,103,103,86,54,103,99,64,64,116,116,116,26,120,103,21,21,62,99,91,29,91,64,106,116,116,122,5,25,25,99,15,26,64,91,62,99,86,38,89,89,89,41,61,120,64,116,116,116,62,80,80,86,99,91,29,29,64,58,58,29,0,103,103,103,103,54,103,99,106,106,116,102,116,106,120,66,21,21,62,99,29,29,64,58,41,2,121,121,121,121,121,121,121,98,121,121,121,121,123,30,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,30,30,30,114,37,98,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta b/conf/data/proteingym_v1/struc_seq/128/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cd48fc82ebb2151433f50f80eea3cc42761452c9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta @@ -0,0 +1,2 @@ +>MAFG_MOUSE_Tsuboyama_2023_1K1V +36,30,124,94,94,124,75,88,40,30,40,30,30,112,40,30,7,40,28,114,30,30,30,30,30,30,70,90,18,73,90,18,39,73,70,112,112,12,12,125,39 diff --git a/conf/data/proteingym_v1/struc_seq/128/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta b/conf/data/proteingym_v1/struc_seq/128/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b05a769047534f327f4a2c6c29cd6dcdfb5dc925 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta @@ -0,0 +1,2 @@ +>MBD11_ARATH_Tsuboyama_2023_6ACV +21,54,86,54,54,21,103,89,25,5,115,103,0,0,0,54,115,115,111,111,98,98,98,111,111,115,66,103,0,66,0,59,59,31,89,51,66,53,66,53,36,40,114,78,70,70,36,114,30,30,114,37,37,110,37,110,40,94,2,88,94,89,25,115,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/MET_HUMAN_Estevam_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/MET_HUMAN_Estevam_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a204ca1614903840c784655983f54eae52bd7299 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MET_HUMAN_Estevam_2023.fasta @@ -0,0 +1,2 @@ +>MET_HUMAN_Estevam_2023 +12,12,12,18,68,12,73,46,71,118,102,52,42,26,122,42,120,80,66,80,99,58,41,58,103,115,29,62,61,31,55,5,58,0,0,0,0,0,29,115,58,31,111,111,115,66,29,103,0,54,0,0,103,5,115,55,2,121,123,30,30,30,126,40,68,107,1,18,108,79,14,107,6,13,6,6,69,6,116,43,55,64,42,59,91,106,77,120,15,89,25,24,25,5,89,99,80,65,65,99,29,64,116,31,59,19,27,107,27,107,83,83,83,23,121,121,23,83,28,124,40,124,1,124,1,14,32,32,14,101,32,1,46,105,18,83,9,108,35,125,7,67,107,13,13,47,107,107,27,4,19,19,19,19,61,31,31,4,102,79,19,79,116,55,47,83,13,47,4,71,2,107,31,71,107,47,4,47,47,98,98,98,98,98,2,47,4,13,27,9,107,14,45,85,9,88,75,75,125,94,119,33,82,14,9,27,27,45,45,14,93,105,14,105,34,27,45,45,9,9,124,83,83,23,23,2,2,98,23,28,23,75,40,83,112,97,125,75,36,125,36,119,94,13,60,110,94,60,94,83,23,114,40,1,83,12,34,34,9,45,124,9,9,83,9,9,94,9,124,124,32,18,39,40,32,73,73,73,18,73,68,1,73,112,40,112,36 diff --git a/conf/data/proteingym_v1/struc_seq/128/MK01_HUMAN_Brenan_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/MK01_HUMAN_Brenan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..87f5184c3b47bdbfd1b83543d5928f3850e2a29b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MK01_HUMAN_Brenan_2016.fasta @@ -0,0 +1,2 @@ +>MK01_HUMAN_Brenan_2016 +24,98,98,98,121,121,98,98,98,42,25,25,61,62,111,25,61,5,89,21,10,42,111,59,66,115,0,54,86,54,54,62,62,62,61,61,62,62,0,0,54,0,58,66,58,4,31,111,61,103,0,65,65,65,86,16,59,82,9,105,124,112,9,45,124,124,105,105,32,112,108,14,39,82,6,88,104,6,69,116,55,43,6,120,120,41,0,120,10,10,89,111,111,2,83,94,2,55,31,115,80,38,65,65,65,86,91,29,61,59,59,79,107,33,79,22,36,94,88,88,83,88,36,30,40,108,1,112,108,18,1,14,105,32,124,101,14,67,9,102,22,22,102,104,13,33,13,13,47,107,4,107,59,58,19,19,19,5,5,111,55,79,19,64,120,116,47,82,14,13,13,47,104,55,5,41,2,41,41,41,41,47,121,121,121,121,98,98,98,60,69,13,13,9,105,85,13,37,75,83,23,47,2,2,13,88,107,9,9,45,45,45,45,93,32,9,105,32,124,83,85,9,9,75,36,36,83,83,107,107,13,83,83,83,83,83,83,76,76,85,4,4,22,104,42,4,33,94,114,28,28,124,23,83,83,23,23,1,108,112,39,40,70,124,83,114,94,69,55,61,26,42,74,74,76,100,119,9,75,75,75,83,112,40,70,1,1,70,1,34,83,45,124,45,45,22,83,9,13,9,9,45,105,1,112,124,105,124,28,1,67,67,124,75,36,112,28,23,94,37,37,9,13,118,104,52,55,104,104,104,111,98,94,69,88,98,94,83,83,112,112,39,1,18,68,73,18,112,68,39,83,37,94,69,69,98,98,98,24,69 diff --git a/conf/data/proteingym_v1/struc_seq/128/MLAC_ECOLI_MacRae_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/MLAC_ECOLI_MacRae_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9d6b20013c6139d4c2b87f2994ed02a507c3c218 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MLAC_ECOLI_MacRae_2023.fasta @@ -0,0 +1,2 @@ +>MLAC_ECOLI_MacRae_2023 +44,44,44,24,24,24,98,98,98,121,121,121,121,121,121,121,121,121,121,121,121,121,23,107,88,110,59,53,30,126,78,70,39,39,108,70,39,1,75,127,35,97,125,127,127,125,72,72,35,72,127,7,67,124,35,34,32,34,34,1,17,1,39,14,76,22,118,43,43,14,32,76,124,93,93,105,17,105,34,72,97,112,28,83,112,40,30,30,112,105,40,18,32,32,93,32,32,93,32,32,93,18,93,32,18,34,45,124,105,124,37,94,94,60,53,66,54,38,10,38,21,60,60,24,60,98,98,111,41,66,0,65,65,54,65,65,65,54,115,41,2,60,24,60,54,54,65,65,65,65,65,0,29,58,59,31,47,47,31,59,19,16,120,79,16,80,80,65,66,89,53,53,27,14,83,112,34,34,17,73,17,97,72,97,97,97,7,70,97,67,105,97,1,32,18,18,18,32,32,124,124,45,9,13,9,13,88,69,69,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/MSH2_HUMAN_Jia_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/MSH2_HUMAN_Jia_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2c21381993c33cd0cdcd349250cca2364c49cfff --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MSH2_HUMAN_Jia_2020.fasta @@ -0,0 +1,2 @@ +>MSH2_HUMAN_Jia_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/128/MTH3_HAEAE_RockahShmuel_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/MTH3_HAEAE_RockahShmuel_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..29696fa9a6ce67365ec0fcf175ee7ae7b0568b82 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MTH3_HAEAE_RockahShmuel_2015.fasta @@ -0,0 +1,2 @@ +>MTH3_HAEAE_RockahShmuel_2015 +11,11,81,81,81,3,84,113,87,107,101,45,101,101,9,105,105,45,105,1,101,96,113,3,11,109,109,109,8,104,104,119,88,27,118,83,9,13,88,94,94,8,52,109,109,109,11,84,84,87,87,36,94,88,28,36,94,60,52,52,63,109,109,49,81,81,3,113,57,88,13,74,23,74,22,22,22,74,74,23,23,100,97,100,97,97,75,97,112,112,112,18,39,117,18,32,112,46,34,34,22,102,63,43,77,92,50,92,15,77,59,66,47,23,76,23,28,97,97,72,90,35,127,90,90,73,78,70,73,82,78,112,14,82,82,51,80,86,86,38,66,66,58,79,19,61,4,4,27,102,102,116,116,58,66,10,48,38,48,80,16,59,59,6,47,69,33,9,69,55,5,33,19,61,61,42,61,116,4,116,102,22,4,107,14,97,100,107,23,37,87,102,52,26,52,52,42,42,116,42,31,104,2,121,2,104,104,102,47,13,4,116,102,116,52,55,69,94,88,55,4,4,19,55,19,64,64,64,61,116,104,4,102,116,102,26,102,102,13,107,107,102,55,102,102,61,64,116,55,55,55,116,64,62,62,64,61,5,111,4,19,58,58,59,31,2,121,2,2,2,31,19,106,106,79,102,14,27,107,27,27,45,27,27,27,85,23,6,69,13,13,45,9,33,33,4,19,27,9,45,27,45,27,45,45,27,27,27,45,85,45,45,105,93,45,45,1,1,14,82,108,126,71,108,70,126,36,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/MTHR_HUMAN_Weile_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/MTHR_HUMAN_Weile_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..21d5cc866be165191ce798bc932dc2e111484935 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MTHR_HUMAN_Weile_2021.fasta @@ -0,0 +1,2 @@ +>MTHR_HUMAN_Weile_2021 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,121,121,98,98,98,98,24,60,98,23,47,121,121,121,23,23,30,117,96,96,30,70,46,39,70,108,46,39,125,108,46,101,63,49,81,81,81,11,20,13,27,13,83,124,124,112,124,112,39,112,18,73,35,67,35,35,108,118,88,107,102,63,49,49,81,81,3,11,113,84,95,74,104,74,87,83,22,23,23,9,9,88,87,9,45,101,87,85,67,118,13,27,14,76,13,102,63,49,81,3,81,20,52,43,5,42,6,110,71,30,40,112,40,68,39,108,70,39,46,76,108,14,83,102,8,49,81,81,3,113,84,42,122,25,60,24,24,24,25,60,25,25,25,60,6,104,6,102,87,14,27,27,46,67,67,76,76,7,72,7,100,74,8,8,20,49,81,49,81,3,113,87,87,47,2,2,2,23,2,23,23,83,126,28,83,68,39,46,1,1,46,87,9,112,22,20,113,109,81,81,81,11,11,84,69,36,108,112,36,57,39,68,108,108,70,39,108,125,72,40,125,108,118,113,20,49,81,3,81,11,87,46,14,14,108,71,126,114,126,12,127,125,125,72,127,119,119,37,37,114,37,30,30,40,72,127,35,70,35,72,7,7,7,7,76,108,108,108,14,14,108,14,1,1,14,1,73,18,108,108,68,70,126,126,30,70,108,117,118,96,20,49,81,81,11,84,11,69,57,28,85,9,9,67,39,1,14,112,17,39,125,33,71,94,13,69,4,42,42,5,26,122,52,55,42,47,4,4,107,104,104,102,104,26,52,26,52,43,84,88,83,57,74,7,110,97,97,76,107,107,71,6,107,47,31,104,104,42,42,26,26,120,15,60,2,2,121,95,98,47,47,47,47,47,98,95,119,119,23,124,124,23,94,94,9,2,114,40,40,74,94,7,74,74,9,9,119,88,88,88,36,40,112,83,124,112,32,45,124,67,85,13,124,45,6,47,4,107,42,31,55,47,22,88,104,13,27,9,22,55,42,42,104,22,6,23,6,88,76,7,7,35,68,68,1,17,18,105,14,34,105,14,82,82,79,16,120,66,66,58,58,99,115,66,115,58,120,61,42,4,74,55,116,61,120,120,61,115,115,62,99,29,62,62,66,80,38,38,80,51,59,51,78,71,14,78,39,73,18,40,73,73,112,127,97,36,119,71,6,53,51,10,48,10,10,16,6,41,53,89,10,86,10,89,115,60,98,2,2,53,120,91,29,29,0,54,103,115,25,25,89,25,21,99,99,26,106,15,120,43,53,71,36,36,78,108,68,83,40,1,93,83,67,67,34,34,35,124,124,97,9,75,88,28,28,121,110,110,88,36,7,40,67,17,70,82,82,83,33,59,51,80,48,48,48,80,66,66,58,58,41,69,6,6,110,36,112,127,73,32,73,18,18,34,18,112,112,30,114,121,121,98,98,98,24,24,24,24,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta b/conf/data/proteingym_v1/struc_seq/128/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4e9fba53cf6d41ee8ffffe7b879e678e8da7539b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta @@ -0,0 +1,2 @@ +>MYO3_YEAST_Tsuboyama_2023_2BTT +5,5,21,103,0,103,62,58,61,61,61,5,5,98,98,42,42,5,115,5,5,64,64,61,62,64,29,0,0,0,29,103,115,41,60,111,53,41,115,103,0,0,66,16,31,58,111,61,62,103,29,29,115,115,61,58,0,66,54,54,21 diff --git a/conf/data/proteingym_v1/struc_seq/128/NCAP_I34A1_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/NCAP_I34A1_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7d87992551adb29fd7ab2af6875b68b300548b32 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NCAP_I34A1_Doud_2015.fasta @@ -0,0 +1,2 @@ +>NCAP_I34A1_Doud_2015 +44,44,44,44,24,24,24,24,2,2,98,24,24,24,24,24,24,24,98,28,28,107,14,14,107,14,14,1,105,108,105,32,93,93,93,93,32,32,93,93,18,18,34,1,35,127,7,72,36,119,28,116,79,14,82,79,14,27,88,1,83,126,108,18,1,82,93,32,45,14,18,17,90,127,35,17,35,72,125,97,97,125,36,119,24,98,98,53,9,82,79,79,51,66,115,16,29,58,115,115,25,25,115,66,103,103,103,103,54,0,51,82,82,83,39,1,73,70,18,34,105,93,1,93,124,72,75,97,34,124,18,18,32,112,124,18,32,45,45,105,14,45,45,45,45,45,27,102,118,76,71,76,85,67,7,67,105,105,105,1,85,27,45,27,27,27,14,27,14,14,14,14,124,23,23,112,28,112,83,83,9,13,27,27,107,14,14,14,105,32,105,32,32,1,73,39,1,108,39,76,75,28,72,125,100,67,76,100,100,97,100,97,97,40,97,17,90,68,73,73,68,18,18,73,18,93,105,45,27,27,107,107,112,40,105,112,17,32,32,18,34,112,34,124,36,9,9,124,112,126,36,112,1,1,32,32,1,93,32,1,34,93,27,27,102,27,4,27,19,19,19,19,79,27,45,45,93,93,45,45,105,32,124,124,67,97,125,125,97,124,124,1,45,27,14,83,107,59,58,59,33,110,107,13,71,83,9,88,88,9,79,79,51,102,77,99,115,89,42,6,6,6,88,9,13,88,45,45,45,45,93,105,45,27,27,27,27,27,4,4,107,6,33,4,4,59,19,4,31,4,71,107,4,55,55,42,55,13,88,47,55,55,13,6,89,24,60,98,2,60,66,25,61,99,58,50,77,77,82,13,82,4,4,19,19,19,64,64,29,64,19,19,19,55,61,58,19,19,43,43,43,118,4,55,55,19,4,4,19,19,19,19,61,64,5,55,58,16,19,19,43,43,57,118,107,46,114,97,34,28,121,124,75,28,75,124,34,28,112,73,32,17,68,18,18,126,82,82,102,43,19,106,64,26,64,58,120,120,120,26,26,26,64,19,58,33,47,33,23,9,55,69,42,26,26,122,42,60,98,98,2,121,23,98,4,19,19,19,102,4,55,42,116,42,104,57,57,104 diff --git a/conf/data/proteingym_v1/struc_seq/128/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta b/conf/data/proteingym_v1/struc_seq/128/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a2775261451e221fd77a4fa8f20fe925734c1e27 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta @@ -0,0 +1,2 @@ +>NKX31_HUMAN_Tsuboyama_2023_2L9R +44,44,37,94,110,30,70,40,40,90,68,73,68,90,40,40,127,72,125,36,75,83,110,36,40,40,40,108,68,1,17,97,39,83,108,108,97,39,39,36,1,40,90,73,39,68,90,68,68,90,90,90,90,90,90,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/NPC1_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/128/NPC1_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7e9423231208bc5e5aa9b31cdd0a1be453ae6301 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NPC1_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/128/NPC1_HUMAN_Erwood_2022_RPE1.fasta b/conf/data/proteingym_v1/struc_seq/128/NPC1_HUMAN_Erwood_2022_RPE1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a916539fcae23b9864a1fd059499fad9862ad524 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NPC1_HUMAN_Erwood_2022_RPE1.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_RPE1 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diff --git a/conf/data/proteingym_v1/struc_seq/128/NRAM_I33A0_Jiang_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/NRAM_I33A0_Jiang_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d7d0ee50c68912cb56656cc5c3f785fb85852a1d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NRAM_I33A0_Jiang_2016.fasta @@ -0,0 +1,2 @@ +>NRAM_I33A0_Jiang_2016 +30,30,12,12,12,12,12,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,30,30,123,121,121,98,98,98,24,24,24,24,24,24,98,98,121,98,121,121,121,23,98,98,47,55,13,19,19,4,19,19,19,116,62,106,26,62,62,62,99,86,54,80,99,16,43,102,102,55,13,118,4,13,23,118,31,4,19,19,0,0,91,54,50,50,50,15,55,55,13,26,15,99,65,50,65,16,29,16,59,19,19,4,4,27,13,47,4,4,107,55,55,69,94,13,55,55,120,120,62,0,65,54,66,91,99,26,116,116,16,64,29,61,58,103,99,0,0,29,62,62,106,106,91,92,50,92,91,19,19,19,19,106,91,0,91,91,99,62,66,61,61,55,58,58,54,54,0,0,0,66,19,99,120,62,58,62,54,65,80,29,120,64,19,61,26,99,91,91,92,63,92,11,50,15,16,116,4,61,19,64,54,50,65,99,91,62,5,116,26,116,116,5,62,103,54,38,38,54,103,0,64,120,29,99,103,115,115,86,89,38,86,21,21,25,5,62,62,91,91,15,91,15,15,54,91,16,116,19,64,0,65,50,103,91,62,64,64,116,116,64,19,64,29,29,0,65,65,66,115,61,5,89,41,66,86,38,29,29,16,19,19,19,64,116,26,64,116,61,61,31,55,61,61,19,19,64,64,29,64,19,116,116,116,19,19,19,64,106,91,91,91,65,86,66,120,104,116,120,16,54,0,65,91,64,64,116,116,42,116,116,64,64,64,91,54,0,54,16,120,52,116,19,19,19,19,19,19,116,120,5,62,91,15,15,91,106,26,64,116,61,64,64,91,92,50,15,50,50,50,120,79,79,13,79,94,9,6,43,55,120,29,54,65,38,38,38,99,99,29,62,89,89,89,89,60,60,69,13,4,120,16,0,16,16,80,80,54,65,99,99,5,62,122,5,122,15,11,26,106,26,120,55,13,55,55,69,69,13,13,69,2 diff --git a/conf/data/proteingym_v1/struc_seq/128/NUD15_HUMAN_Suiter_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/NUD15_HUMAN_Suiter_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9612d28935bccacbf0950c10385b1b622892e027 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NUD15_HUMAN_Suiter_2020.fasta @@ -0,0 +1,2 @@ +>NUD15_HUMAN_Suiter_2020 +44,44,44,44,24,98,98,24,42,69,52,63,63,92,92,77,106,91,92,91,77,120,84,2,120,55,33,59,106,103,0,0,29,29,58,31,41,60,116,61,26,19,120,16,91,51,77,77,92,106,61,25,2,110,110,77,77,71,53,77,82,74,6,19,4,22,4,79,31,59,59,43,15,99,77,15,91,15,64,106,59,106,43,43,89,37,110,37,88,116,106,106,92,91,92,77,92,92,91,91,120,120,41,2,41,41,41,66,58,31,59,33,4,31,31,19,58,58,115,0,54,120,120,41,6,111,2,2,104,94,88,104,102,33,4,59,77,79,88,88,33,112,67,36,97,23,23,55,60,2,69,2,60,94,88,94,23,123,94,69,120,122,122,69 diff --git a/conf/data/proteingym_v1/struc_seq/128/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta b/conf/data/proteingym_v1/struc_seq/128/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d42bd1329392bd09b6ab4666d3dc7e194c1d5ddd --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta @@ -0,0 +1,2 @@ +>NUSA_ECOLI_Tsuboyama_2023_1WCL +108,67,1,126,83,83,1,67,105,97,97,1,1,83,83,112,39,112,39,112,1,108,14,83,112,36,36,67,108,108,14,75,94,85,67,75,7,30,112,28,112,9,28,36,83,94,47,114,114,40,30,30,108,1,39,105,34,1,32,1,1,1,39,39,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta b/conf/data/proteingym_v1/struc_seq/128/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta new file mode 100644 index 0000000000000000000000000000000000000000..40778742793b1f6379854058595c5eac296c9cc1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta @@ -0,0 +1,2 @@ +>NUSG_MYCTU_Tsuboyama_2023_2MI6 +21,89,62,62,62,62,0,0,0,29,58,61,2,95,61,61,115,58,0,0,0,103,29,29,115,53,111,2,6,6,53,58,0,0,0,29,29,58,25,25,5,103,115,103,0,103,29,41,115,61,66,0,0,86,54 diff --git a/conf/data/proteingym_v1/struc_seq/128/OBSCN_HUMAN_Tsuboyama_2023_1V1C.fasta b/conf/data/proteingym_v1/struc_seq/128/OBSCN_HUMAN_Tsuboyama_2023_1V1C.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b723ae3bcb6f6fe64ab23cf14537d89d591343f4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/OBSCN_HUMAN_Tsuboyama_2023_1V1C.fasta @@ -0,0 +1,2 @@ +>OBSCN_HUMAN_Tsuboyama_2023_1V1C +21,86,54,0,103,62,29,61,62,62,21,25,98,98,121,60,42,120,89,21,21,64,64,64,62,64,0,65,38,65,54,21,66,60,111,2,59,120,58,0,54,38,54,103,115,111,111,111,25,25,115,103,54,86,29,66,120,66,61,58,66,80,54,38,21 diff --git a/conf/data/proteingym_v1/struc_seq/128/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta b/conf/data/proteingym_v1/struc_seq/128/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8ab224464bc71cb352d9a6f784fff4cffc698aa6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta @@ -0,0 +1,2 @@ +>ODP2_GEOSE_Tsuboyama_2023_1W4G +24,98,52,104,87,118,57,30,40,46,83,97,97,39,72,127,70,72,70,7,88,94,94,88,107,47,47,87,84,84,52,116,27,9,117,125,83,83,112,126,36,39,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/OPSD_HUMAN_Wan_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/OPSD_HUMAN_Wan_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b388718053e382ee9e6d4619e08a0f4c5f3ffbeb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/OPSD_HUMAN_Wan_2019.fasta @@ -0,0 +1,2 @@ +>OPSD_HUMAN_Wan_2019 +69,111,115,115,115,21,26,61,120,41,55,55,41,69,69,95,121,98,119,95,95,5,116,55,42,55,27,4,71,95,22,108,72,97,70,17,67,18,68,32,18,73,18,18,18,17,32,1,35,1,32,34,70,18,32,73,73,32,73,39,73,34,35,17,17,28,28,112,40,67,67,67,34,32,32,32,18,32,93,32,32,93,93,93,105,105,105,105,1,105,105,1,45,45,32,124,45,45,105,45,85,27,27,27,108,71,71,70,71,102,78,14,82,27,14,105,45,45,105,93,93,105,1,93,32,93,18,93,32,32,32,32,32,1,1,1,75,74,97,67,76,119,121,98,98,37,98,36,88,83,97,40,1,73,68,18,18,73,18,18,32,1,1,1,105,1,105,108,67,85,27,76,85,22,67,74,102,79,106,106,43,47,27,102,27,27,79,79,79,79,13,13,104,76,95,74,22,85,76,76,76,70,76,108,35,97,97,72,72,72,97,97,72,97,1,39,39,18,18,32,18,18,32,18,39,34,18,73,39,18,73,68,73,35,35,35,127,72,72,127,127,127,35,35,70,68,73,73,68,18,73,73,18,73,68,68,73,68,90,39,17,39,1,17,67,67,67,97,97,70,1,67,39,108,88,83,83,110,69,69,69,69,110,13,47,71,14,83,83,39,67,67,105,67,17,105,105,105,93,32,17,18,32,17,39,17,39,39,18,70,70,68,1,39,28,67,34,108,83,124,14,7,100,7,7,7,47,23,121,121,121,123,123,123,123,123,121,121,121,121,121,98,98,98,24,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/OTC_HUMAN_Lo_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/OTC_HUMAN_Lo_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..abcb45ae946e563020a71edbcc4a2d4afd320520 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/OTC_HUMAN_Lo_2023.fasta @@ -0,0 +1,2 @@ +>OTC_HUMAN_Lo_2023 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,98,98,98,121,121,121,121,121,121,121,121,121,121,121,23,71,22,22,8,63,63,49,8,8,102,85,45,94,85,108,67,112,83,1,124,124,93,93,124,124,32,105,124,67,17,100,100,76,100,100,100,100,119,22,22,22,22,8,8,8,63,49,49,81,81,11,11,11,11,84,57,114,124,45,101,112,18,105,118,76,1,101,101,22,85,8,8,113,3,81,11,11,84,84,95,84,104,95,57,95,95,95,95,119,85,46,46,46,46,67,7,118,118,22,43,49,63,49,49,49,109,3,113,57,57,117,126,46,96,108,32,46,101,85,105,46,101,20,49,20,49,113,20,8,8,52,102,22,118,118,85,105,105,93,32,105,105,93,18,46,36,108,97,88,36,88,118,20,63,63,49,49,49,3,20,63,52,52,116,118,118,20,45,85,46,124,105,45,101,101,45,101,20,20,20,49,49,49,20,63,102,116,102,102,52,101,85,30,40,1,112,68,73,34,124,39,124,46,112,17,46,46,20,20,20,49,11,113,113,113,102,101,20,49,20,102,102,63,63,49,49,81,81,122,122,102,88,2,95,23,23,28,72,72,97,70,127,108,67,30,83,27,107,22,102,87,96,117,117,9,101,8,22,118,101,8,8,8,63,20,3,3,113,87,84,122,84,60,52,104,52,113,57,57,57,57,57,23,74,104,20,113,96,96,117,1,46,45,93,32,93,93,93,32,93,93,32,45,101,45,22,20,102,13,104,104,13,9,13,88,13,9,14,13,27 diff --git a/conf/data/proteingym_v1/struc_seq/128/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta b/conf/data/proteingym_v1/struc_seq/128/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta new file mode 100644 index 0000000000000000000000000000000000000000..459e565f1ea546062d7e702761eed456844a203d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta @@ -0,0 +1,2 @@ +>OTU7A_HUMAN_Tsuboyama_2023_2L2D +24,36,36,112,17,40,34,1,112,17,34,34,112,97,112,40,112,112,39,39,39,34,18,18,18,32,34,17,35,34,34,34,18,39,35,17,1,12,68,1,70,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/OXDA_RHOTO_Vanella_2023_activity.fasta b/conf/data/proteingym_v1/struc_seq/128/OXDA_RHOTO_Vanella_2023_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bcc23d71e8096af7827efb7755e3cd907b11a849 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/OXDA_RHOTO_Vanella_2023_activity.fasta @@ -0,0 +1,2 @@ +>OXDA_RHOTO_Vanella_2023_activity +69,55,69,87,11,3,81,3,3,63,20,101,45,45,101,45,93,105,101,32,18,46,46,124,108,46,96,20,49,81,81,81,11,52,84,8,124,75,23,9,22,95,104,110,104,79,27,22,55,55,16,79,120,79,120,88,47,71,76,7,7,7,125,125,1,9,124,17,34,105,93,32,18,14,68,39,82,78,70,7,78,125,119,6,71,33,53,77,50,16,50,91,50,50,15,84,53,53,53,23,104,42,110,28,28,100,76,59,23,33,120,58,62,66,0,38,10,115,41,60,10,10,53,2,42,84,120,99,54,91,29,16,16,77,120,33,33,27,83,1,14,1,39,18,18,1,39,18,1,112,40,46,46,101,3,81,81,11,11,63,113,57,33,87,37,37,3,113,57,104,63,52,77,81,49,63,113,113,16,59,102,4,47,22,4,13,13,102,22,47,13,4,43,16,16,0,0,0,38,54,80,54,0,16,19,55,61,120,43,91,92,92,50,77,120,43,84,37,69,42,43,91,91,91,16,120,5,26,5,120,99,54,80,16,10,99,29,103,29,29,66,115,89,89,89,89,53,126,30,6,53,70,117,53,78,108,78,33,67,40,53,78,76,47,79,4,47,107,107,107,107,2,47,4,61,0,54,103,54,80,99,89,16,16,16,16,19,61,61,31,120,64,106,91,77,50,50,10,86,89,89,53,2,47,23,2,6,33,13,13,55,60,2,95,95,98,60,98,24,89,89,86,50,50,77,77,92,92,106,106,19,102,16,55,13,27,27,9,93,93,32,32,93,32,18,1,14,73,68,117,117,70,72,117,108,125,125,88,88,28,94,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/OXDA_RHOTO_Vanella_2023_expression.fasta b/conf/data/proteingym_v1/struc_seq/128/OXDA_RHOTO_Vanella_2023_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..01285629bd619bef4a016900fdbfb64a1cd48940 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/OXDA_RHOTO_Vanella_2023_expression.fasta @@ -0,0 +1,2 @@ +>OXDA_RHOTO_Vanella_2023_expression +69,55,69,87,11,3,81,3,3,63,20,101,45,45,101,45,93,105,101,32,18,46,46,124,108,46,96,20,49,81,81,81,11,52,84,8,124,75,23,9,22,95,104,110,104,79,27,22,55,55,16,79,120,79,120,88,47,71,76,7,7,7,125,125,1,9,124,17,34,105,93,32,18,14,68,39,82,78,70,7,78,125,119,6,71,33,53,77,50,16,50,91,50,50,15,84,53,53,53,23,104,42,110,28,28,100,76,59,23,33,120,58,62,66,0,38,10,115,41,60,10,10,53,2,42,84,120,99,54,91,29,16,16,77,120,33,33,27,83,1,14,1,39,18,18,1,39,18,1,112,40,46,46,101,3,81,81,11,11,63,113,57,33,87,37,37,3,113,57,104,63,52,77,81,49,63,113,113,16,59,102,4,47,22,4,13,13,102,22,47,13,4,43,16,16,0,0,0,38,54,80,54,0,16,19,55,61,120,43,91,92,92,50,77,120,43,84,37,69,42,43,91,91,91,16,120,5,26,5,120,99,54,80,16,10,99,29,103,29,29,66,115,89,89,89,89,53,126,30,6,53,70,117,53,78,108,78,33,67,40,53,78,76,47,79,4,47,107,107,107,107,2,47,4,61,0,54,103,54,80,99,89,16,16,16,16,19,61,61,31,120,64,106,91,77,50,50,10,86,89,89,53,2,47,23,2,6,33,13,13,55,60,2,95,95,98,60,98,24,89,89,86,50,50,77,77,92,92,106,106,19,102,16,55,13,27,27,9,93,93,32,32,93,32,18,1,14,73,68,117,117,70,72,117,108,125,125,88,88,28,94,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f8d2a3e70a3ed42cd31e671df956a6c03408f907 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_Null_Etoposide +44,44,44,44,24,24,24,98,98,98,98,104,104,27,27,9,101,13,87,9,88,87,87,57,60,60,37,60,60,84,60,69,2,60,60,25,25,25,24,122,25,122,122,84,57,28,107,28,23,104,22,47,87,87,55,116,2,60,98,98,98,98,2,2,2,121,2,2,98,98,60,24,5,41,41,55,60,41,89,60,60,2,121,121,121,121,121,98,94,69,94,94,94,98,94,94,69,69,21,86,21,99,62,62,29,19,61,115,29,103,54,38,86,25,25,25,69,13,13,9,13,55,55,26,120,106,6,42,47,118,52,15,91,106,106,26,26,64,106,103,54,86,65,54,38,0,29,115,41,5,115,5,5,61,115,99,38,48,48,38,86,99,66,66,41,2,121,41,55,52,87,26,64,116,19,4,33,110,4,13,23,83,9,9,13,13,9,87,89,13,13,19,62,62,99,99,38,66,89,115,42,25,89,86,86,80,41,2,2,47,55,69,5,62,86,38,38,38,99,86,21,5,25,25,60,60,25,115,89,86,54,54,54,65,91,26,64,19,116,52,104,104,74,6,104,116,74,104,55,58,16,50,50,48,48,38,80,80,58,55,55,89,16,16,29,29,99,86,50,77,50,50,77,26,42,43,4,79,13,83,71,88,68,90,90,90,90,90,126,71,71,110,6,6,23,123,121,121,98,98,98,24,24,44,44,44,44,44,44,44,44,44,44,21,115,41,41,95,60,98,98,98,98,24,24,24,24,44,44,44,44,37,37,114,30,30,30,114,12,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,30,72,72,28,121,121,98,121,121,98,98,24,24,24,24,24,24,98,98,121,121,123,123,123,127,125,28,119,121,98,60,60,98,60,60,24,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2d2963126e2a19e4fe8a19ccc2ae3d8202533d54 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_Null_Nutlin +44,44,44,44,24,24,24,98,98,98,98,104,104,27,27,9,101,13,87,9,88,87,87,57,60,60,37,60,60,84,60,69,2,60,60,25,25,25,24,122,25,122,122,84,57,28,107,28,23,104,22,47,87,87,55,116,2,60,98,98,98,98,2,2,2,121,2,2,98,98,60,24,5,41,41,55,60,41,89,60,60,2,121,121,121,121,121,98,94,69,94,94,94,98,94,94,69,69,21,86,21,99,62,62,29,19,61,115,29,103,54,38,86,25,25,25,69,13,13,9,13,55,55,26,120,106,6,42,47,118,52,15,91,106,106,26,26,64,106,103,54,86,65,54,38,0,29,115,41,5,115,5,5,61,115,99,38,48,48,38,86,99,66,66,41,2,121,41,55,52,87,26,64,116,19,4,33,110,4,13,23,83,9,9,13,13,9,87,89,13,13,19,62,62,99,99,38,66,89,115,42,25,89,86,86,80,41,2,2,47,55,69,5,62,86,38,38,38,99,86,21,5,25,25,60,60,25,115,89,86,54,54,54,65,91,26,64,19,116,52,104,104,74,6,104,116,74,104,55,58,16,50,50,48,48,38,80,80,58,55,55,89,16,16,29,29,99,86,50,77,50,50,77,26,42,43,4,79,13,83,71,88,68,90,90,90,90,90,126,71,71,110,6,6,23,123,121,121,98,98,98,24,24,44,44,44,44,44,44,44,44,44,44,21,115,41,41,95,60,98,98,98,98,24,24,24,24,44,44,44,44,37,37,114,30,30,30,114,12,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,30,72,72,28,121,121,98,121,121,98,98,24,24,24,24,24,24,98,98,121,121,123,123,123,127,125,28,119,121,98,60,60,98,60,60,24,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0f7d9ae549759d65f3914e0de6b24db7dea80242 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_WT_Nutlin +44,44,44,44,24,24,24,98,98,98,98,104,104,27,27,9,101,13,87,9,88,87,87,57,60,60,37,60,60,84,60,69,2,60,60,25,25,25,24,122,25,122,122,84,57,28,107,28,23,104,22,47,87,87,55,116,2,60,98,98,98,98,2,2,2,121,2,2,98,98,60,24,5,41,41,55,60,41,89,60,60,2,121,121,121,121,121,98,94,69,94,94,94,98,94,94,69,69,21,86,21,99,62,62,29,19,61,115,29,103,54,38,86,25,25,25,69,13,13,9,13,55,55,26,120,106,6,42,47,118,52,15,91,106,106,26,26,64,106,103,54,86,65,54,38,0,29,115,41,5,115,5,5,61,115,99,38,48,48,38,86,99,66,66,41,2,121,41,55,52,87,26,64,116,19,4,33,110,4,13,23,83,9,9,13,13,9,87,89,13,13,19,62,62,99,99,38,66,89,115,42,25,89,86,86,80,41,2,2,47,55,69,5,62,86,38,38,38,99,86,21,5,25,25,60,60,25,115,89,86,54,54,54,65,91,26,64,19,116,52,104,104,74,6,104,116,74,104,55,58,16,50,50,48,48,38,80,80,58,55,55,89,16,16,29,29,99,86,50,77,50,50,77,26,42,43,4,79,13,83,71,88,68,90,90,90,90,90,126,71,71,110,6,6,23,123,121,121,98,98,98,24,24,44,44,44,44,44,44,44,44,44,44,21,115,41,41,95,60,98,98,98,98,24,24,24,24,44,44,44,44,37,37,114,30,30,30,114,12,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,30,72,72,28,121,121,98,121,121,98,98,24,24,24,24,24,24,98,98,121,121,123,123,123,127,125,28,119,121,98,60,60,98,60,60,24,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Kotler_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Kotler_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9bc4a80a79a113d2c2b18019310475571eaba0a8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/P53_HUMAN_Kotler_2018.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Kotler_2018 +44,44,44,44,24,24,24,24,98,98,98,104,104,27,27,94,101,13,13,9,87,87,57,57,60,25,37,122,122,122,122,69,60,60,60,25,25,25,24,122,122,122,122,60,57,117,107,28,23,22,104,4,22,102,55,116,42,60,60,24,24,60,2,2,69,94,47,69,69,69,60,60,69,55,6,55,69,120,41,41,60,2,121,121,121,121,98,98,94,69,94,94,94,69,69,13,55,55,21,86,89,99,62,58,58,19,61,5,29,103,54,38,86,21,25,25,69,94,13,9,13,55,55,106,120,120,6,42,126,88,52,15,106,106,106,26,26,64,106,29,54,54,54,54,38,0,29,115,41,5,120,42,5,61,58,16,80,48,48,38,99,99,66,66,31,2,121,31,55,87,87,116,64,116,19,4,4,110,47,4,23,83,9,45,13,13,9,87,120,13,13,19,91,64,99,80,54,103,41,115,42,25,89,99,99,16,41,2,2,47,69,69,5,62,103,38,38,38,99,99,5,5,25,25,60,60,25,115,21,86,54,54,54,65,91,26,16,19,8,52,104,74,74,2,104,116,74,104,55,120,16,50,50,48,48,80,80,80,19,19,55,58,16,16,58,29,99,86,50,50,50,50,77,116,43,43,4,79,13,83,126,88,68,90,68,90,90,90,70,71,71,71,33,33,31,121,121,121,98,98,98,24,24,24,44,44,44,44,44,44,44,44,44,44,21,58,59,31,2,60,98,24,60,24,24,24,44,44,44,44,44,37,37,37,30,30,30,114,12,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,30,125,72,123,121,121,95,98,121,98,24,24,24,24,24,24,24,24,98,37,114,123,125,72,127,30,28,119,121,95,60,60,69,69,60,69,25,24,25 diff --git a/conf/data/proteingym_v1/struc_seq/128/P84126_THETH_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/P84126_THETH_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6df5e16e814a886ae8c474c5415d390ff3063b60 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/P84126_THETH_Chan_2017.fasta @@ -0,0 +1,2 @@ +>P84126_THETH_Chan_2017 +69,55,47,6,9,36,94,83,83,28,108,14,124,40,40,1,17,39,36,36,30,30,36,37,69,25,25,4,116,116,102,55,116,116,52,8,63,102,9,102,20,102,101,13,43,87,20,49,49,20,3,102,102,19,19,19,33,31,19,31,19,31,55,55,94,85,9,1,105,101,101,45,1,101,27,105,124,22,20,8,49,49,81,49,63,43,4,4,4,4,19,19,4,118,101,105,45,101,85,93,45,101,85,112,118,43,102,63,49,81,3,81,52,87,87,88,88,124,88,36,46,45,27,101,102,27,14,102,20,63,49,3,81,113,113,46,9,27,107,85,34,85,46,67,34,85,76,76,67,46,117,7,14,101,101,20,20,81,20,49,96,87,46,112,36,46,46,39,67,46,124,17,97,46,8,8,49,49,81,3,11,52,31,55,4,47,55,47,31,111,6,13,70,87,96,1,39,117,46,40,35,40,7,72,72,125,117,57,87,63,20,49,3,11,122,122,84,88,83,36,40,36,57,126,40,118,57,33,102,20,63,49,81,81,11,52,52,87,13,87,27,14,83,45,105,124,105,85,85,124,85,107,13,9 diff --git a/conf/data/proteingym_v1/struc_seq/128/PABP_YEAST_Melamed_2013.fasta b/conf/data/proteingym_v1/struc_seq/128/PABP_YEAST_Melamed_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..df11f281ee54fa539fda17253234d7dce0a681d1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PABP_YEAST_Melamed_2013.fasta @@ -0,0 +1,2 @@ +>PABP_YEAST_Melamed_2013 +114,114,30,30,40,127,127,127,68,127,90,35,12,30,125,37,98,24,44,44,44,44,44,44,44,44,44,44,44,24,24,98,121,121,23,23,13,79,66,10,38,80,80,120,120,61,19,55,47,33,53,110,30,78,78,127,35,82,76,75,108,83,104,79,120,66,10,10,16,58,31,47,2,47,9,2,47,31,58,58,99,99,48,80,80,79,13,13,82,124,14,82,9,97,108,78,125,7,88,33,55,31,116,4,69,42,111,116,19,16,51,10,10,10,2,121,114,123,123,28,28,28,72,13,107,4,120,51,38,80,99,120,120,42,19,31,47,33,59,71,28,53,33,70,39,71,82,75,108,107,104,79,61,99,51,99,16,61,58,2,111,6,42,59,41,61,58,99,16,38,80,120,79,19,4,107,14,83,79,82,40,14,82,126,108,88,43,55,42,42,55,2,111,111,55,120,16,51,10,120,10,6,110,126,30,30,30,12,90,90,90,90,12,12,110,71,71,59,59,66,80,38,80,99,120,120,41,41,31,47,110,33,110,30,53,78,70,68,71,82,83,108,83,104,79,58,66,51,103,58,61,61,95,2,111,111,31,41,61,58,99,80,38,80,16,79,116,19,33,107,107,79,82,39,14,82,7,7,88,120,55,55,55,55,60,5,5,42,120,120,51,10,120,66,6,114,30,30,30,30,12,90,90,90,90,90,90,90,90,90,90,90,90,12,12,30,30,7,107,13,13,79,120,16,38,80,80,120,120,41,19,55,47,33,59,33,71,33,59,126,97,71,82,124,83,9,104,59,64,66,51,66,16,61,58,2,111,111,2,31,41,61,58,99,16,80,16,16,79,116,4,107,14,14,79,82,97,14,82,83,76,13,53,55,42,55,55,60,25,5,61,120,80,51,51,51,10,6,110,114,30,30,30,12,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,70,90,127,127,72,127,72,125,123,121,119,24,98,24,24,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,98,121,114,114,30,70,127,90,90,90,90,68,90,90,68,73,68,90,32,18,68,18,32,73,18,32,34,17,17,112,112,40,40,112,30,1,17,18,32,18,18,32,73,32,32,112,30,112,18,30,40,34,112,35,73,32,40,127,35,127,68,73,68,127,73,73,73,73,73,18,73,68,73,68,90,90,90,90,90,90,90,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/PAI1_HUMAN_Huttinger_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/PAI1_HUMAN_Huttinger_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bc93da5c09308b24ea39e1d883936031db3bf568 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PAI1_HUMAN_Huttinger_2021.fasta @@ -0,0 +1,2 @@ +>PAI1_HUMAN_Huttinger_2021 +44,44,44,44,24,24,24,24,98,98,98,98,98,98,98,121,121,123,123,123,123,121,23,2,22,85,45,105,105,45,14,45,105,105,105,14,105,93,14,14,93,32,82,34,18,36,82,112,70,110,88,53,53,86,89,48,10,77,14,14,79,101,1,46,78,14,1,46,105,105,45,45,85,45,71,82,27,14,9,34,105,34,67,1,93,105,45,76,97,23,121,23,23,85,108,67,97,34,39,97,1,67,72,97,71,121,28,121,23,47,2,55,115,99,99,77,51,77,43,77,106,106,116,52,122,26,41,47,53,110,114,82,110,7,97,83,125,108,1,124,125,6,87,77,11,106,118,118,4,4,108,71,108,70,118,71,70,12,71,126,108,108,53,71,7,6,53,88,7,113,43,71,33,43,107,23,94,69,55,13,83,47,55,116,106,106,92,77,77,77,77,50,50,99,15,99,58,64,58,64,61,58,61,61,41,16,29,29,103,0,91,29,19,120,55,55,52,115,120,103,103,29,29,29,29,99,62,15,99,29,103,103,0,54,54,66,66,59,31,31,111,59,58,0,65,65,65,65,0,16,16,19,55,31,47,19,0,65,65,65,80,10,66,66,115,60,98,6,6,82,88,33,53,88,124,9,112,39,14,14,30,82,108,30,53,53,126,53,115,103,103,29,91,91,15,50,91,91,62,103,62,103,86,50,86,10,120,51,82,71,67,17,105,112,34,93,32,18,105,107,27,22,4,4,4,4,4,4,13,120,79,79,55,41,89,60,60,31,116,106,52,106,77,77,77,50,50,50,38,86,62,29,61,61,64,62,115,5,25,25,25,25,24,60,98,60,24,24,24,24,122,15,92,11,92,92,50,91,116,120,10,48,48,65,54,51,79,79,27,14,45,45,79,16,77,80,10,10,99,10,120,62 diff --git a/conf/data/proteingym_v1/struc_seq/128/PA_I34A1_Wu_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/PA_I34A1_Wu_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4e8df73de3e1e575e987efded28b187632daa8d9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PA_I34A1_Wu_2015.fasta @@ -0,0 +1,2 @@ +>PA_I34A1_Wu_2015 +17,39,30,97,112,36,114,83,112,40,30,40,39,1,68,39,18,1,40,112,39,72,70,125,125,7,100,67,119,119,9,67,124,124,105,1,32,32,1,32,124,1,73,40,78,126,39,83,79,4,58,58,58,58,61,58,111,13,69,61,29,58,58,111,111,98,98,98,98,98,41,41,58,58,58,58,59,79,79,13,105,83,112,83,30,40,126,36,68,70,71,40,68,83,36,40,72,75,36,9,118,88,55,60,69,4,106,106,106,106,19,19,19,4,102,43,106,106,92,20,92,20,96,118,117,57,53,110,30,117,78,90,90,117,125,127,30,94,23,2,98,52,106,15,77,92,50,77,87,117,87,9,69,43,89,10,89,89,60,89,89,2,114,114,114,30,40,83,40,73,32,112,73,18,46,39,68,17,35,35,35,35,35,35,97,72,35,35,72,97,17,83,124,9,23,75,83,28,112,75,9,9,60,44,24,25,94,114,114,30,125,23,107,23,23,71,71,47,23,2,98,98,110,23,71,71,126,126,126,30,127,30,30,30,114,114,121,121,121,123,123,127,30,30,30,30,30,30,114,114,121,98,98,2,69,41,115,115,103,59,13,9,69,69,9,13,88,27,13,55,26,26,106,26,26,116,104,104,2,25,69,59,115,94,88,5,5,99,0,51,10,51,99,99,103,89,21,99,25,60,94,94,53,88,112,78,79,73,71,78,88,36,110,53,89,103,62,29,80,10,10,10,10,79,55,55,69,94,88,83,33,108,40,82,82,68,68,70,68,70,126,68,90,126,73,68,70,36,75,28,119,2,2,94,94,69,59,58,103,66,41,6,112,97,35,88,75,75,82,51,88,100,119,119,98,24,24,24,37,37,119,119,119,121,28,123,121,121,98,121,98,24,24,24,24,24,5,5,64,64,26,26,6,118,117,117,108,70,70,39,32,1,14,105,45,27,27,4,19,16,19,59,55,25,44,44,44,44,25,69,114,94,36,40,40,114,30,39,70,70,68,39,68,90,17,93,83,1,1,45,79,79,27,27,45,45,82,14,32,14,27,105,1,14,9,1,73,108,82,108,90,88,118,100,7,4,104,4,61,120,16,80,80,51,16,16,51,99,16,16,16,19,31,58,58,66,0,80,80,16,29,0,0,38,80,80,16,61,55,104,47,98,47,110,31,41,41,16,86,38,48,48,65,54,99,80,99,89,79,53,100,125,119,7,74,74,120,104,120,120,59,80,80,80,80,0,29,0,103,103,115,115,111,111,115,115,103,103,103,29,0,80,65,0,80,80,10,48,38,53,82,107,71,14,1,1,105,32,18,32,32,32,32,18,32,73,73,18,18,90,68,18,68,90,68,39,70,70,70,7,7,127,125,125,125,97,97,67,67,100,76,85,67,75,74,23,59,53,115,115,59,61,6,111,111,111,111,5,115,58,59,33,82,105,82,45,93,93,93,93,32,93,93,18,32,93,34,105,45,83,105,40,112,83,112,39,1,18,73,39,73,18,90,90,73,90,90,126,1,35,40,112,112,72,72,125,88,78,120,59,53,33,110,114,127,40,36,39,18,32,45,124,124,27,19,116,13,88,67,112,9,40,73,1,108,12,68,36,39,39,124,36,126,18,124,124 diff --git a/conf/data/proteingym_v1/struc_seq/128/PHOT_CHLRE_Chen_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/PHOT_CHLRE_Chen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..acb368f233684893db1f37c807e3e61c36af9bdc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PHOT_CHLRE_Chen_2023.fasta @@ -0,0 +1,2 @@ +>PHOT_CHLRE_Chen_2023 +24,24,25,69,120,51,80,80,80,66,58,58,41,58,2,31,59,31,58,29,58,66,51,53,33,53,33,88,13,33,74,71,110,2,98,121,31,61,31,31,31,19,47,60,58,59,41,89,66,66,53,126,12,78,78,90,12,78,90,70,110,78,70,7,59,53,10,51,54,66,54,66,0,29,58,31,31,31,61,55,58,58,0,0,54,65,65,38,65,99,29,61,41,111,111,111,31,59,58,58,0,38,48,48,48,0,103,66,59,110,28,30,110,94,125,126,88,94 diff --git a/conf/data/proteingym_v1/struc_seq/128/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta b/conf/data/proteingym_v1/struc_seq/128/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4be553242ef3abf12e78bf1dc9be6456fdfb4537 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta @@ -0,0 +1,2 @@ +>PIN1_HUMAN_Tsuboyama_2023_1I6C +60,41,60,111,59,115,66,54,0,115,111,111,2,111,111,111,115,103,103,66,115,59,31,31,31,89,66,21,103,21,115,25,60,60,24,98,98,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta b/conf/data/proteingym_v1/struc_seq/128/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2bfa132d35470d4f46efd06e873c937615e3120b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta @@ -0,0 +1,2 @@ +>PITX2_HUMAN_Tsuboyama_2023_2L7M +44,37,88,110,30,70,67,40,70,68,18,68,90,39,35,127,125,36,97,75,112,110,83,39,108,108,108,39,105,1,97,17,67,67,1,97,39,39,40,1,40,90,68,39,68,90,68,35,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta b/conf/data/proteingym_v1/struc_seq/128/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8af2ece7f8bd7feda2b1b8bf8dc3d4b259d9aa08 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta @@ -0,0 +1,2 @@ +>PKN1_HUMAN_Tsuboyama_2023_1URF +110,36,36,30,39,112,40,90,73,73,68,68,18,73,90,73,73,68,73,73,18,68,18,18,73,73,73,73,73,18,17,35,34,39,112,75,112,28,28,40,40,40,68,39,17,73,73,73,18,68,18,73,68,18,18,73,68,73,73,68,68,18,73,90,73,18,68,18,1,124,1 diff --git a/conf/data/proteingym_v1/struc_seq/128/POLG_CXB3N_Mattenberger_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/POLG_CXB3N_Mattenberger_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e5339bc252425e8d6df62b9d54f34172bb75cefe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/POLG_CXB3N_Mattenberger_2021.fasta @@ -0,0 +1,2 @@ +>POLG_CXB3N_Mattenberger_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/128/POLG_DEN26_Suphatrakul_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/POLG_DEN26_Suphatrakul_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d4a1d029993b857108f4dab572f266a1a7010855 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/POLG_DEN26_Suphatrakul_2023.fasta @@ -0,0 +1,2 @@ +>POLG_DEN26_Suphatrakul_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/128/POLG_HCVJF_Qi_2014.fasta b/conf/data/proteingym_v1/struc_seq/128/POLG_HCVJF_Qi_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..009a0d42f30c4a60ab0c66aa5628460184340202 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/POLG_HCVJF_Qi_2014.fasta @@ -0,0 +1,2 @@ +>POLG_HCVJF_Qi_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/128/POLG_PESV_Tsuboyama_2023_2MXD.fasta b/conf/data/proteingym_v1/struc_seq/128/POLG_PESV_Tsuboyama_2023_2MXD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..269f9b63aff7c7bea7bcfcb5beafed7e359319d2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/POLG_PESV_Tsuboyama_2023_2MXD.fasta @@ -0,0 +1,2 @@ +>POLG_PESV_Tsuboyama_2023_2MXD +121,112,30,30,127,39,68,90,68,68,68,90,40,125,72,35,40,125,119,119,36,126,40,70,30,39,68,68,39,17,35,97,97,97,97,97,97,97,67,40,112,35,97,68,73,68,90,12,68,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/PPARG_HUMAN_Majithia_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/PPARG_HUMAN_Majithia_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b833100578e0a5df0adb35579e50f49d4f77d5be --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PPARG_HUMAN_Majithia_2016.fasta @@ -0,0 +1,2 @@ +>PPARG_HUMAN_Majithia_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/128/PPM1D_HUMAN_Miller_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/PPM1D_HUMAN_Miller_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6850868421e1a01dbd94a4bfa0d20d7cb4ae495d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PPM1D_HUMAN_Miller_2022.fasta @@ -0,0 +1,2 @@ +>PPM1D_HUMAN_Miller_2022 +98,94,13,13,79,51,48,48,48,48,10,51,80,120,58,79,55,61,2,69,5,120,99,51,10,51,48,38,38,99,120,16,41,2,121,121,121,121,121,121,121,98,98,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,121,123,123,123,121,121,27,55,79,120,80,38,48,48,48,48,80,80,51,51,79,55,53,82,82,51,43,14,82,78,72,18,1,82,97,1,1,45,14,1,14,83,83,94,75,75,75,36,36,28,83,82,1,1,82,82,14,1,45,45,1,105,14,39,17,108,35,127,35,71,110,110,6,2,31,31,111,47,69,47,2,47,31,79,51,51,80,80,65,48,48,48,38,99,120,69,89,99,48,38,38,54,99,99,99,10,0,54,10,0,66,0,66,66,41,41,98,98,98,41,66,66,66,80,103,86,21,5,61,120,55,19,79,36,72,28,76,71,7,76,82,14,85,107,83,13,79,59,58,61,61,69,69,116,61,61,16,29,29,103,29,21,115,60,98,5,60,60,25,5,60,24,24,25,60,115,103,103,62,62,115,19,58,64,19,16,16,79,82,4,79,69,55,47,47,31,47,23,47,47,4,27,4,102,79,79,80,99,10,10,10,99,89,89,16,16,120,120,29,16,65,48,48,48,80,10,53,79,82,79,23,14,67,71,33,59,71,14,51,108,39,39,39,68,70,70,127,72,125,72,72,100,100,119,119,119,110,47,82,51,53,108,82,82,108,39,14,107,39,108,14,7,70,7,125,36,13,27,55,120,79,80,10,48,48,48,80,80,66,69,53,66,41,98,121,121,121,2,121,69,41,41,89,38,10,48,51,16,79,79,16,16,99,10,10,78,78,30,114,123,123,123,123,121,121,98,98,98,98,98,98,98,98,98,24,24,24,44,44,24,24,24,24,24,24,98,24,24,24,24,24,24,24,98,98,98,98,98,98,98,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,98,98,98,98,98,121,98,121,98,121,121,121,121,121,121,121,121,121,98,98,98,98,98,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,98,98,98,24,24,24,24,24,24,24,24,24,24,24,24,24,24,24,98,98,98,98,98,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta b/conf/data/proteingym_v1/struc_seq/128/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..584e7a060c0e2fea31977677b25ebb405b6140b8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta @@ -0,0 +1,2 @@ +>PR40A_HUMAN_Tsuboyama_2023_1UZC +94,75,9,75,9,112,112,40,40,112,32,18,73,32,73,73,39,34,97,35,67,124,124,9,36,94,23,28,39,40,28,83,112,72,67,17,35,72,17,28,112,34,75,75,32,40,30,30,30,112,32,68,68,18,18,73,68,73,36,68,68,40,40 diff --git a/conf/data/proteingym_v1/struc_seq/128/PRKN_HUMAN_Clausen_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/PRKN_HUMAN_Clausen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2e6ba14de88acc618586648031598ff415b7ecac --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PRKN_HUMAN_Clausen_2023.fasta @@ -0,0 +1,2 @@ +>PRKN_HUMAN_Clausen_2023 +15,15,15,15,91,92,77,87,13,87,55,106,103,15,66,21,69,5,6,4,47,107,33,88,14,107,108,97,40,108,108,97,72,7,72,108,107,83,55,120,120,58,50,50,120,69,13,69,89,59,58,59,4,31,47,31,104,47,47,47,52,52,52,15,15,106,15,77,77,51,120,120,111,111,25,24,98,98,121,98,121,98,98,98,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,122,122,44,44,44,44,44,24,60,24,98,24,24,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,98,55,47,19,58,120,0,66,16,58,61,31,98,111,69,69,79,29,0,0,16,10,80,120,120,58,16,61,31,59,31,55,61,58,115,29,29,21,58,19,41,59,110,94,42,89,95,95,104,61,55,58,29,29,58,58,58,2,2,98,41,41,58,29,29,16,19,10,10,0,99,99,99,5,60,60,60,25,5,41,5,99,62,66,16,51,120,120,0,58,115,66,2,23,31,59,19,19,4,4,116,102,116,31,31,41,58,59,59,19,58,31,31,31,4,19,79,19,59,59,82,46,88,83,112,88,108,39,46,46,83,105,9,9,124,88,33,58,58,58,111,31,31,61,59,58,31,41,41,13,19,55,2,31,2,41,58,33,31,23,88,36,23,83,83,85,1,14,39,40,34,127,72,18,17,68,70,73,70,35,108,108,35,71,71,7,71,110,88,33,4,61,42,31,2,94,55,55,55,79,55,55,41,60,2,98,60,111,115,58,58,61,31,31,2,98,121,47,31,55,55,61,61,58,58,41,31,47,55,42,115,58,115,25,44,60,2,98,121,47,23,23,23,47,121,121,98,124,45,9,9,13,107,83,83,39,107,4,107,107,4,4,4,107,23,121,123,123,123,123,56,56,60,115,41,59,58,61,31,31,2,31,41,41,115,115,25,111,5,61,61,61,58,58,58,111,111,2,121,121,2,2,41,58,19,19,61,31,47,42,55,58,59,6,69,53,31,55,120,19,19,19,19,19,61 diff --git a/conf/data/proteingym_v1/struc_seq/128/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta b/conf/data/proteingym_v1/struc_seq/128/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta new file mode 100644 index 0000000000000000000000000000000000000000..04c842b68f2e4fb4441b5f1411b439aa20f10a78 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta @@ -0,0 +1,2 @@ +>PSAE_SYNP2_Tsuboyama_2023_1PSE +25,99,62,62,62,29,0,0,0,16,59,31,2,121,2,2,42,31,41,42,29,0,29,0,29,62,64,111,60,98,98,111,41,61,61,62,29,0,0,62,5,61,41,5,5,60,60,60,98,24,24,60,60,5,5,62,29,0,29,58,61,61,41,58,66,0,86,65 diff --git a/conf/data/proteingym_v1/struc_seq/128/PTEN_HUMAN_Matreyek_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/PTEN_HUMAN_Matreyek_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7d9a30dc9914212e422bb3067612aabc0b832bd9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PTEN_HUMAN_Matreyek_2021.fasta @@ -0,0 +1,2 @@ +>PTEN_HUMAN_Matreyek_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/128/PTEN_HUMAN_Mighell_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/PTEN_HUMAN_Mighell_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a2911bc50fa12f92b3236cd89d6493f09dca8dd8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/PTEN_HUMAN_Mighell_2018.fasta @@ -0,0 +1,2 @@ +>PTEN_HUMAN_Mighell_2018 +45,124,105,17,46,85,101,97,85,102,71,6,19,19,62,5,41,41,98,60,2,47,55,19,16,16,15,82,116,42,63,11,92,106,106,52,52,8,95,95,114,119,119,74,87,67,101,118,74,74,97,7,76,17,97,125,7,7,72,74,118,76,22,102,20,20,81,49,11,11,11,11,122,11,122,69,94,119,119,75,46,9,74,57,113,3,109,49,11,52,84,84,102,116,13,27,69,71,110,83,93,1,68,1,73,68,90,96,68,90,117,118,114,28,23,107,118,87,20,49,81,3,113,52,84,102,102,102,22,87,20,45,45,45,93,93,93,105,34,105,34,97,72,97,17,97,105,32,1,17,1,45,14,105,14,27,14,4,79,19,59,59,107,4,107,45,27,22,22,88,118,45,85,124,93,32,32,32,1,1,40,34,97,125,125,119,119,6,89,89,89,99,80,0,0,0,0,65,48,80,80,99,64,64,116,61,5,60,116,64,61,5,29,0,54,54,80,99,15,10,5,89,89,115,103,54,21,21,103,62,21,5,15,26,25,5,21,62,120,38,103,62,115,115,58,29,29,0,80,10,89,66,99,80,38,65,54,103,62,103,115,60,98,24,24,115,89,89,99,0,66,80,16,10,51,51,89,89,102,120,120,41,2,98,98,98,121,121,98,98,24,24,24,24,24,121,121,114,28,14,87,6,87,120,64,103,54,115,115,111,111,111,111,115,103,0,0,16,38,80,79,4,13,79,79,27,13,4,27,23,28,23,121,23,47,31,47,47,47,31,19,10,38,48,65,65,0,0,99,99,25,24,98,98,98,98,98,98,24,24,44,44,44,44,44,44,24,24,24,24,24,24,98,98,98,98,98,121,121,121,121,98,98,23,121,23,121,121,121,121,98,98,98,98,121,121,98,98,98,98,98,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/Q2N0S5_9HIV1_Haddox_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/Q2N0S5_9HIV1_Haddox_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5419199508aa00fee8feb6355483eeed402e9c60 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q2N0S5_9HIV1_Haddox_2018.fasta @@ -0,0 +1,2 @@ +>Q2N0S5_9HIV1_Haddox_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/128/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta b/conf/data/proteingym_v1/struc_seq/128/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b8d14514197dc108902c494b8b1c1af3184d83b7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q53Z42_HUMAN_McShan_2019_binding-TAPBPR.fasta @@ -0,0 +1,2 @@ +>Q53Z42_HUMAN_McShan_2019_binding-TAPBPR 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diff --git a/conf/data/proteingym_v1/struc_seq/128/Q53Z42_HUMAN_McShan_2019_expression.fasta b/conf/data/proteingym_v1/struc_seq/128/Q53Z42_HUMAN_McShan_2019_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3784d19644a3a409630d0c31b23cac3134c29ea4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q53Z42_HUMAN_McShan_2019_expression.fasta @@ -0,0 +1,2 @@ +>Q53Z42_HUMAN_McShan_2019_expression 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diff --git a/conf/data/proteingym_v1/struc_seq/128/Q59976_STRSQ_Romero_2015.fasta b/conf/data/proteingym_v1/struc_seq/128/Q59976_STRSQ_Romero_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..88d9bf2c2d1c363476e9deebf3e7a06a33ceb9fc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q59976_STRSQ_Romero_2015.fasta @@ -0,0 +1,2 @@ +>Q59976_STRSQ_Romero_2015 +44,44,44,44,24,24,24,24,24,98,69,2,69,69,41,59,58,82,102,55,102,63,63,20,49,109,81,3,11,8,4,102,22,22,22,22,22,4,22,47,22,4,22,4,107,107,4,107,107,27,107,23,107,94,9,27,27,47,47,13,47,27,4,22,22,27,27,85,76,76,97,97,34,17,127,35,17,73,112,45,105,32,1,45,101,20,49,49,81,81,3,96,102,102,4,27,107,27,4,22,107,27,69,2,27,107,14,83,107,14,39,18,46,39,68,18,46,108,17,46,46,97,67,46,101,63,49,81,81,81,20,87,113,87,47,27,107,76,74,83,76,72,70,112,124,105,105,105,105,34,105,34,32,93,93,32,93,124,105,1,105,45,85,67,67,14,22,22,118,102,63,49,49,81,20,20,109,113,46,45,85,9,105,85,27,85,85,27,13,4,4,27,27,76,22,22,107,27,27,83,85,45,45,105,105,93,93,93,93,93,93,93,45,45,93,93,101,105,1,46,88,67,67,22,4,2,52,8,63,63,81,109,109,3,113,8,63,96,87,43,43,120,55,47,47,71,88,53,33,78,82,82,108,1,46,76,67,45,9,75,76,85,85,22,22,45,27,22,22,22,22,76,97,36,112,17,75,97,67,124,97,76,67,112,123,75,98,9,9,121,114,124,45,27,45,105,85,45,22,102,63,109,49,49,81,81,109,113,52,106,52,106,106,77,43,33,19,42,2,2,95,42,84,42,120,41,55,9,9,94,13,2,13,47,27,14,45,75,27,2,4,79,55,77,52,61,26,26,122,26,26,19,58,19,116,116,42,102,102,124,105,87,46,18,18,46,14,39,35,76,76,97,72,100,74,118,8,63,63,49,81,81,81,49,63,106,19,58,41,120,115,120,115,111,111,111,52,31,43,57,117,110,118,40,39,82,108,112,34,124,105,124,18,1,83,1,39,83,114,1,112,76,96,20,63,49,49,109,63,11,106,63,64,16,19,19,19,79,27,47,79,79,33,19,120,26,106,102,4,106,19,41,13,9,94,94,59,120,106,102,59,118,108,14,105,1,45,1,124,45,13,124,88,6,59,82,33,47,23,23,23,23,123,123,127,127,35,127,127,90,68,90,90,90,90,30,30,30,30,114,114 diff --git a/conf/data/proteingym_v1/struc_seq/128/Q6WV13_9MAXI_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/Q6WV13_9MAXI_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4ebfb11096131f7aaa4e6a65c7e3ec0bb8f08417 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q6WV13_9MAXI_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>Q6WV13_9MAXI_Somermeyer_2022 +6,5,77,91,54,50,50,50,50,48,50,15,15,89,89,122,122,15,115,50,65,65,65,65,54,80,77,120,106,52,106,106,77,80,65,65,65,65,54,0,54,103,29,58,58,58,33,47,59,53,71,119,53,78,117,10,10,74,53,77,46,118,106,77,106,77,25,25,69,69,110,13,33,33,107,33,33,33,71,6,6,6,59,38,48,48,48,48,48,48,80,0,41,61,10,80,48,38,48,48,48,86,15,21,15,122,122,15,15,15,15,50,50,50,50,50,50,50,10,120,2,2,121,121,31,58,47,47,47,31,19,31,58,103,103,103,86,48,48,48,48,48,54,115,80,61,41,58,99,80,48,48,48,48,38,65,54,103,29,29,58,58,58,29,29,0,54,65,48,48,48,48,48,38,80,16,16,19,19,59,71,71,36,13,33,125,119,110,5,54,38,38,48,48,48,38,38,86,38,38,66,29,58,66,99,80,38,38,38,80,48,77,77,50,38,86,21,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/Q837P4_ENTFA_Meier_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/Q837P4_ENTFA_Meier_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0ed7eedba8aafadf7a16d569a06b1e1305a414d2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q837P4_ENTFA_Meier_2023.fasta @@ -0,0 +1,2 @@ +>Q837P4_ENTFA_Meier_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/128/Q837P5_ENTFA_Meier_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/Q837P5_ENTFA_Meier_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f8caccb6feb32a6bf16ee7aa5cbaceccb4663a98 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q837P5_ENTFA_Meier_2023.fasta @@ -0,0 +1,2 @@ +>Q837P5_ENTFA_Meier_2023 +68,12,18,18,17,17,73,18,73,73,18,68,73,18,18,18,18,32,32,18,93,93,93,18,32,32,93,18,32,32,32,18,32,32,32,32,32,32,18,18,18,17,35,35,35,127,35,35,127,35,35,68,68,73,73,90,73,73,68,68,18,18,73,18,18,73,18,18,18,18,18,32,32,18,32,32,32,18,32,32,32,18,32,32,32,73,32,18,68,68,32,18,68,112,105,126,110,88,71,76,22,74,7,76,28,72,72,72,72,72,34,97,127,32,32,35,35,32,32,32,18,32,32,32,17,93,32,34,105,105,105,1,35,67,105,32,1,32,32,32,73,32,32,93,18,34,32,17,34,34,34,72,72,17,35,127,18,32,68,73,18,18,90,18,18,18,90,73,18,68,73,18,32,73,73,73,73,73,73,73,68,73,73,68,68,73,73,90,73,73,68,68,73,73,127,68,35,127,127,127,127,127,72,127,72,127,127,127,127,127,127,127,35,68,90,73,73,68,68,73,73,68,73,73,73,73,18,73,68,73,73,68,68,73,73,90,68,73,68,90,73,18,73,90,18,32,73,73,18,18,68,68,73,68,90,90,35,35,127,35,72,72,72,72,35,17,17,17,18,32,32,32,32,93,32,32,32,32,32,32,93,32,32,73,32,32,73,18,73,73,68,68,68,73,73,68,18,73,18,73,73,73,68,68,32,39,12,124,34,124,83,13,110,55,55,42,42,42,122,122,42,42,42,104,116,106,106,16,99,54,86,103,29,29,29,115,115,2,47,98,60,60,25,120,55,19,120,29,62,103,86,38,15,15,77,102,63,49,92,92,3,113,87,87,57,9,87,88,87,117,83,118,57,7,71,87,118,22,36,88,42,42,21,62,62,29,66,10,79,61,120,89,53,31,5,42,104,104,104,117,6,102,9,22,102,20,20,20,87,87,87,27,9,55,13,59,19,19,59,79,107,33,9,45,124,67,85,124,97,100,112,97,40,30,67,105,34,34,105,32,93,105,32,32,32,34,97,67,67,28,28,28,23,47,107,107,4,4,19,59,61,59,42,59,2,2,110,28,71,9,83,9,9,105,93,45,45,93,93,101,45,105,45,102,20,20,63,49,3,3,57,87,101,9,9,83,39,28,40,30,112,39,70,18,1,1,17,17,67,67,97,97,101,118,102,20,49,49,81,49,3,57,87,88,96,28,57,113,57,118,63,106,77,92,92,77,43,87,55,79,55,15,120,41,77,53,43,118,7,53,110,72,100,119,110,72,57,88,72,127,108,70,68,90,68,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/Q8WTC7_9CNID_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/Q8WTC7_9CNID_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5957460cd84283b36e109377ea63aa568598314f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/Q8WTC7_9CNID_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>Q8WTC7_9CNID_Somermeyer_2022 +83,107,88,88,9,88,9,27,110,6,89,106,50,50,50,50,50,50,50,50,15,99,120,122,122,15,115,50,54,48,48,38,65,65,16,106,102,8,63,106,77,80,65,65,65,48,10,99,99,115,120,120,120,41,33,23,53,53,51,125,7,72,51,51,53,76,51,51,101,27,102,77,102,118,57,2,37,41,47,104,19,13,79,79,107,13,55,27,13,55,19,16,65,65,48,48,48,48,48,80,66,115,41,66,54,48,50,48,38,50,54,16,66,106,15,25,63,26,106,50,91,50,50,50,50,50,50,62,99,53,47,74,100,74,16,33,6,6,55,59,59,58,16,62,115,21,86,54,65,65,65,65,65,66,66,41,2,115,61,16,66,65,65,65,65,38,54,54,0,29,58,58,62,5,103,103,0,65,65,48,48,48,48,48,10,16,120,120,69,69,69,55,55,4,19,19,120,0,54,65,50,65,48,38,38,86,54,86,86,24,24,24,60,60,5,89,89,10,65,65,38,48,50,10,77,99,65,86,41,98,121,28,123,123,123,123,125,125 diff --git a/conf/data/proteingym_v1/struc_seq/128/R1AB_SARS2_Flynn_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/R1AB_SARS2_Flynn_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6a5ae0deaeb6552ad84e357b3b76478b2074cd4d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/R1AB_SARS2_Flynn_2022.fasta @@ -0,0 +1,2 @@ +>R1AB_SARS2_Flynn_2022 +37,36,88,69,55,62,86,21,53,53,7,87,19,19,13,79,58,29,0,65,80,120,5,60,42,106,106,29,0,16,0,58,61,29,0,65,80,99,120,79,27,42,13,75,74,23,74,22,74,104,104,22,7,67,30,30,67,75,30,36,88,37,5,5,69,120,0,65,80,58,16,25,89,86,54,29,58,58,115,86,21,16,16,19,19,120,80,80,0,0,29,29,58,58,61,19,13,102,102,63,92,92,92,15,26,26,26,61,116,61,16,103,54,54,29,29,64,106,91,16,19,19,115,21,21,86,54,54,99,64,64,61,55,64,29,29,103,103,21,62,5,26,116,61,26,29,29,0,0,91,15,15,11,5,92,15,92,92,91,91,0,29,29,64,5,62,5,111,111,25,115,62,29,29,64,62,29,120,120,5,120,62,120,5,5,5,120,42,104,42,25,60,60,120,69,55,55,43,79,19,27,9,45,14,105,105,14,105,34,105,112,83,124,88,36,28,119,69,88,83,88,6,33,13,83,71,83,110,112,14,88,39,39,14,71,35,14,104,71,104,118,85,83,30,40,124,1,70,73,32,97,35,34,39,72,17,17,125,67,76,14,107,6,107,14,83,14,105,67,75,97,97,67,100,119,95,95,69,2,2,94,69,69,60,60,60,13,47,107,79,82,85,105,112,88,124,67,125,94,36,125,125,119,6,5,122 diff --git a/conf/data/proteingym_v1/struc_seq/128/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta b/conf/data/proteingym_v1/struc_seq/128/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0a1d341a057450c089ba8ebe9f65d9d141ae712b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RAD_ANTMA_Tsuboyama_2023_2CJJ.fasta @@ -0,0 +1,2 @@ +>RAD_ANTMA_Tsuboyama_2023_2CJJ +69,110,114,114,36,83,39,70,1,1,39,1,1,105,97,124,83,23,23,2,23,28,112,124,1,108,1,124,105,45,14,14,9,47,83,126,39,108,108,1,39,68,68,68,90,90,90,90,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/RAF1_HUMAN_Zinkus-Boltz_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/RAF1_HUMAN_Zinkus-Boltz_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f19a1d98aa22b3d7e0301aaa5de14ca7d47f8603 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RAF1_HUMAN_Zinkus-Boltz_2019.fasta @@ -0,0 +1,2 @@ +>RAF1_HUMAN_Zinkus-Boltz_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/128/RASH_HUMAN_Bandaru_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/RASH_HUMAN_Bandaru_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1750a12de6350359f62e691740fac53c73b4ee63 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RASH_HUMAN_Bandaru_2017.fasta @@ -0,0 +1,2 @@ +>RASH_HUMAN_Bandaru_2017 +15,11,92,92,49,92,3,3,63,43,43,61,19,43,87,102,79,9,46,13,85,75,67,6,100,36,75,36,94,25,25,60,25,5,61,5,120,89,50,115,50,15,50,103,115,6,55,25,122,15,15,15,92,92,92,50,77,77,43,4,104,110,114,28,28,127,70,124,34,35,101,101,34,101,20,101,20,49,81,3,3,113,43,87,47,4,6,71,118,96,126,126,117,68,90,126,117,90,18,46,112,105,34,124,75,114,36,95,102,96,49,3,3,3,3,20,8,87,47,104,23,47,2,47,118,71,110,30,40,117,117,90,126,117,7,70,46,96,96,20,113,3,113,96,87,88,13,23,9,46,96,46,39,126,96,46,126,46,96,96,39,46,46,1,68,39,39,127,72,72,72,125,123,123,56,121,121,121,121,121,98,98,98,24,24,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RASK_HUMAN_Weng_2022_abundance.fasta b/conf/data/proteingym_v1/struc_seq/128/RASK_HUMAN_Weng_2022_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..20a43e0f16b39f2be49a37f1e17fb50d8b2bcb47 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RASK_HUMAN_Weng_2022_abundance.fasta @@ -0,0 +1,2 @@ +>RASK_HUMAN_Weng_2022_abundance +15,11,92,92,49,92,3,3,63,43,43,61,61,43,87,102,79,9,46,13,76,75,67,6,100,36,75,75,94,25,25,60,25,5,61,5,120,89,50,115,50,15,50,66,115,6,55,25,122,15,15,15,92,92,92,50,77,77,43,104,104,110,114,28,28,127,70,124,34,35,87,46,34,101,20,20,20,49,81,3,3,113,43,87,104,4,6,71,33,96,126,126,117,68,90,126,117,90,18,46,112,34,34,124,75,114,119,95,87,96,49,3,3,3,3,20,8,87,2,104,47,47,2,47,118,71,110,30,40,117,117,70,126,117,7,70,117,96,87,20,113,3,113,96,96,88,13,23,124,117,96,46,39,126,96,46,126,46,96,96,39,46,46,39,68,39,68,90,90,90,90,90,90,90,90,90,90,90,30,30,114,114,121,98,24,24,24,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta b/conf/data/proteingym_v1/struc_seq/128/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1151b376b4022e8b20c6e91d3f2981cf16f91eaf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RASK_HUMAN_Weng_2022_binding-DARPin_K55.fasta @@ -0,0 +1,2 @@ +>RASK_HUMAN_Weng_2022_binding-DARPin_K55 +15,11,92,92,49,92,3,3,63,43,43,61,61,43,87,102,79,9,46,13,76,75,67,6,100,36,75,75,94,25,25,60,25,5,61,5,120,89,50,115,50,15,50,66,115,6,55,25,122,15,15,15,92,92,92,50,77,77,43,104,104,110,114,28,28,127,70,124,34,35,87,46,34,101,20,20,20,49,81,3,3,113,43,87,104,4,6,71,33,96,126,126,117,68,90,126,117,90,18,46,112,34,34,124,75,114,119,95,87,96,49,3,3,3,3,20,8,87,2,104,47,47,2,47,118,71,110,30,40,117,117,70,126,117,7,70,117,96,87,20,113,3,113,96,96,88,13,23,124,117,96,46,39,126,96,46,126,46,96,96,39,46,46,39,68,39,68,90,90,90,90,90,90,90,90,90,90,90,30,30,114,114,121,98,24,24,24,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta b/conf/data/proteingym_v1/struc_seq/128/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta new file mode 100644 index 0000000000000000000000000000000000000000..613b4171f240e25feb693a24d3316c63ca952bf7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RBP1_HUMAN_Tsuboyama_2023_2KWH.fasta @@ -0,0 +1,2 @@ +>RBP1_HUMAN_Tsuboyama_2023_2KWH +114,30,30,12,12,39,68,90,73,73,68,73,73,73,68,73,73,68,68,73,73,90,40,40,127,30,30,123,30,30,30,127,35,68,90,73,73,68,73,73,73,68,73,73,73,68,73,73,12,112,112,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta b/conf/data/proteingym_v1/struc_seq/128/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta new file mode 100644 index 0000000000000000000000000000000000000000..99d517561c32e8ea19ee35d96b1374c1a73bc5be --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RCD1_ARATH_Tsuboyama_2023_5OAO.fasta @@ -0,0 +1,2 @@ +>RCD1_ARATH_Tsuboyama_2023_5OAO +114,30,40,112,112,112,67,40,28,76,83,7,30,30,40,39,90,68,18,68,90,35,35,127,35,35,72,72,72,72,35,72,70,30,70,39,68,70,39,17,70,72,108,76,7,72,70,108,39,90,68,73,73,12,73,36,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/RCRO_LAMBD_Tsuboyama_2023_1ORC.fasta b/conf/data/proteingym_v1/struc_seq/128/RCRO_LAMBD_Tsuboyama_2023_1ORC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..395ad43cc03391329444cd735d07829bba8a1078 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RCRO_LAMBD_Tsuboyama_2023_1ORC.fasta @@ -0,0 +1,2 @@ +>RCRO_LAMBD_Tsuboyama_2023_1ORC +21,21,10,51,51,71,74,110,108,7,97,70,39,39,108,97,67,97,76,88,88,110,7,97,97,39,40,67,17,127,40,108,70,30,125,33,66,66,80,10,86,86,115,111,111,111,111,53,66,80,54,66,115,29,25,25,115,21,86,54,54,53,25 diff --git a/conf/data/proteingym_v1/struc_seq/128/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta b/conf/data/proteingym_v1/struc_seq/128/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ea7b99fcf86c50b26c5cfdf84f548c72ced15814 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RD23A_HUMAN_Tsuboyama_2023_1IFY.fasta @@ -0,0 +1,2 @@ +>RD23A_HUMAN_Tsuboyama_2023_1IFY +12,40,112,68,68,17,34,40,73,17,39,40,125,125,39,40,40,40,67,18,1,34,67,105,105,124,1,67,32,34,32,34,17,34,67,97,67,67,97,72,75,67,74,69 diff --git a/conf/data/proteingym_v1/struc_seq/128/RDRP_I33A0_Li_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/RDRP_I33A0_Li_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1446498e710f84e559b117f2483bd85c10055fa2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RDRP_I33A0_Li_2023.fasta @@ -0,0 +1,2 @@ +>RDRP_I33A0_Li_2023 +44,44,37,37,114,40,123,100,72,123,123,72,72,72,33,88,76,76,112,17,17,83,23,23,36,98,55,55,5,99,103,21,5,51,16,82,14,51,82,1,39,14,45,32,1,45,27,67,85,102,22,55,55,61,115,103,115,59,55,27,27,55,55,58,58,120,4,102,102,87,104,84,52,69,24,24,69,55,27,27,102,102,101,101,46,39,39,93,18,73,18,32,73,17,73,34,72,97,97,72,72,17,34,97,18,18,34,68,73,73,17,12,40,14,71,71,71,71,108,107,9,9,83,107,47,19,19,19,79,107,27,27,55,102,19,19,33,4,107,71,14,107,1,68,39,39,73,126,71,108,35,88,88,112,35,39,17,1,124,107,107,108,108,14,108,105,32,73,18,18,35,68,124,124,36,107,13,79,79,51,51,80,80,10,54,86,54,103,103,103,115,111,111,111,47,2,111,111,111,115,103,103,103,66,86,38,86,86,86,54,10,53,53,82,107,78,82,27,79,101,45,101,79,106,91,16,120,66,54,62,120,115,55,69,25,25,25,21,120,51,99,15,106,106,79,14,105,14,85,32,32,34,32,18,93,32,32,32,32,105,32,93,45,23,124,45,27,79,107,79,27,27,36,36,110,126,40,117,71,126,108,14,70,68,108,78,90,12,78,78,30,126,53,53,94,69,51,10,10,10,38,38,38,54,66,59,59,79,19,27,27,27,27,27,76,45,105,105,18,32,32,32,34,32,93,34,67,75,112,28,30,30,39,112,39,73,18,18,32,32,105,93,45,45,82,102,102,102,16,79,79,79,19,79,41,103,21,115,111,111,2,111,111,111,115,21,103,59,4,27,47,94,9,9,23,121,119,36,94,94,36,40,40,40,112,40,40,18,32,73,17,105,14,13,79,79,79,82,4,106,79,19,79,55,27,27,27,79,59,47,9,93,14,1,18,14,107,14,32,46,14,18,105,79,14,45,82,33,104,74,107,47,2,47,33,82,79,51,51,51,79,33,79,33,16,58,16,80,80,51,80,10,51,53,82,53,126,78,51,70,70,78,78,90,68,108,39,108,105,14,27,22,45,27,27,79,59,41,89,60,89,99,89,38,10,38,10,61,120,29,80,115,115,5,55,120,19,61,58,59,59,55,4,107,76,67,107,14,14,94,107,14,14,83,13,55,69,33,9,79,79,27,27,107,4,14,85,108,32,93,17,35,75,67,125,23,7,74,83,72,108,40,40,1,108,90,1,14,70,39,108,108,126,70,105,105,70,97,85,9,85,9,9,85,22,104,98,98,98,23,28,75,75,125,17,67,67,70,124,76,40,28,71,107,4,13,13,107,27,27,27,45,85,85,22,104,13,69,94,83,45,95,94,83,83,88,107,13,13,119,23,9,83,83,83,83,71,70,126,110,76,125,71,71,23,47,47,2,41,60,69,60,5,69,88,74,74,95,43,60,55,115,41,103,66,115,59,13,55,25,25,21,103,103,103,58,33,55,33,13,55,19,4,79,58,41,62,5,24,24,98,119,121,123,123,94,23,53,78,28,125,35,127,90,90,90,90,90,90,90,90,68,73,68,73,17,39,35,35,17,72,100,100,76,74,74,95,119,60,98,94,36,114,40,39,39,112,18,18,73,68,18,73,90,73,39,39,35,97,40,97,72,125,125,40,97,30,30,40,39,68,68,18,18,68,73,73,68,90,68,68,12,12,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/REV_HV1H2_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/REV_HV1H2_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..00af6b88927cf2274eea9e88a2de79ff69456570 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/REV_HV1H2_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>REV_HV1H2_Fernandes_2016 +44,24,98,37,114,30,30,70,70,90,68,68,90,90,68,68,90,68,68,68,90,68,39,30,30,36,94,94,13,69,94,24,37,114,114,30,30,114,70,90,40,40,90,90,40,68,90,68,40,90,90,68,68,90,68,68,68,90,73,35,127,127,17,72,72,123,121,121,121,98,98,98,98,98,98,121,121,121,121,121,121,123,121,121,121,121,98,98,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta b/conf/data/proteingym_v1/struc_seq/128/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6c7acf3c080576720e4874866a347a7c007922f7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RFAH_ECOLI_Tsuboyama_2023_2LCL.fasta @@ -0,0 +1,2 @@ +>RFAH_ECOLI_Tsuboyama_2023_2LCL +44,21,62,62,5,62,62,29,0,0,58,58,61,41,95,64,61,89,120,29,0,29,0,29,62,62,115,66,41,41,115,103,0,0,0,103,103,21,25,25,25,21,103,103,0,103,103,115,115,61,61,58,99,86,54 diff --git a/conf/data/proteingym_v1/struc_seq/128/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta b/conf/data/proteingym_v1/struc_seq/128/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7a06ff0edb05cf3aad405b380565965c6f733aa1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RL20_AQUAE_Tsuboyama_2023_1GYZ.fasta @@ -0,0 +1,2 @@ +>RL20_AQUAE_Tsuboyama_2023_1GYZ +73,1,1,1,1,108,14,1,1,7,7,40,36,108,70,70,108,14,1,75,18,34,105,67,105,34,45,75,119,28,114,112,112,30,124,17,97,35,17,34,72,72,72,127,35,17,35,90,18,18,90,34,34,93,32,34,32,124,75 diff --git a/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Mavor_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Mavor_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fa76aa1944f89191818c8c420c12302f0320b434 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Mavor_2016.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Mavor_2016 +122,15,15,92,92,50,50,122,111,52,111,15,15,50,86,21,89,42,6,4,4,33,107,71,71,107,108,97,36,36,97,72,119,125,125,7,7,88,13,120,53,66,91,91,15,5,89,25,115,59,58,4,19,33,4,47,31,107,6,47,104,52,122,15,11,91,92,50,50,50,89,115,5,60,24,24,98,28,28,30,70,70,30,72,72,72,125,7,33,71,33,31,58,58,58,58,31,47,2,120,58,58,58,59,58,42,58,31,31,31,6,2,121,121,2,2,47,47,31,59,58,58,58,29,5,5,25,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Roscoe_2013.fasta b/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Roscoe_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..942be5b5bdc4490b9554d8a3abc1479398700d7a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Roscoe_2013.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Roscoe_2013 +122,15,15,92,92,50,50,122,111,52,111,15,15,50,86,21,89,42,6,4,4,33,107,71,71,107,108,97,36,36,97,72,119,125,125,7,7,88,13,120,53,66,91,91,15,5,89,25,115,59,58,4,19,33,4,47,31,107,6,47,104,52,122,15,11,91,92,50,50,50,89,115,5,60,24,24,98,28,28,30,70,70,30,72,72,72,125,7,33,71,33,31,58,58,58,58,31,47,2,120,58,58,58,59,58,42,58,31,31,31,6,2,121,121,2,2,47,47,31,59,58,58,58,29,5,5,25,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Roscoe_2014.fasta b/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Roscoe_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0d63f494e4a0addc53ec3ddc3454d45400ec7575 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RL40A_YEAST_Roscoe_2014.fasta @@ -0,0 +1,2 @@ +>RL40A_YEAST_Roscoe_2014 +122,15,15,92,92,50,50,122,111,52,111,15,15,50,86,21,89,42,6,4,4,33,107,71,71,107,108,97,36,36,97,72,119,125,125,7,7,88,13,120,53,66,91,91,15,5,89,25,115,59,58,4,19,33,4,47,31,107,6,47,104,52,122,15,11,91,92,50,50,50,89,115,5,60,24,24,98,28,28,30,70,70,30,72,72,72,125,7,33,71,33,31,58,58,58,58,31,47,2,120,58,58,58,59,58,42,58,31,31,31,6,2,121,121,2,2,47,47,31,59,58,58,58,29,5,5,25,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/RNC_ECOLI_Weeks_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/RNC_ECOLI_Weeks_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..29dd6185f60eedd0c7070046a668ae1332124293 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RNC_ECOLI_Weeks_2023.fasta @@ -0,0 +1,2 @@ +>RNC_ECOLI_Weeks_2023 +112,114,12,12,40,40,126,17,17,67,67,124,105,97,76,7,71,110,83,36,40,1,83,27,45,45,45,27,27,104,74,104,116,95,74,107,45,45,105,93,32,32,18,18,32,73,32,32,73,73,18,32,73,32,34,1,97,72,72,110,119,119,110,110,30,126,36,83,1,40,14,32,105,97,17,105,67,67,105,67,1,1,32,18,18,18,18,18,93,93,124,124,27,27,22,22,118,76,7,76,7,125,72,97,36,36,34,124,32,105,45,105,105,93,93,93,93,105,93,32,32,105,45,105,45,83,71,7,67,108,70,1,18,68,17,32,18,35,18,17,127,72,125,112,125,114,36,110,88,13,94,94,36,83,1,39,39,1,39,108,71,70,108,71,7,70,7,7,110,6,6,16,54,0,65,54,65,86,54,21,115,89,89,111,60,115,66,66,66,16,0,0,66,59,60,2,60,24,115,66,59,16,51,51,51,10,51,51,71,33,51,79,14,82,79,82,14,14,88,1,72,125,125,72,35,72 diff --git a/conf/data/proteingym_v1/struc_seq/128/RPC1_BP434_Tsuboyama_2023_1R69.fasta b/conf/data/proteingym_v1/struc_seq/128/RPC1_BP434_Tsuboyama_2023_1R69.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6be6194a63e5470816d96196cc2cc4915c2cbe10 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RPC1_BP434_Tsuboyama_2023_1R69.fasta @@ -0,0 +1,2 @@ +>RPC1_BP434_Tsuboyama_2023_1R69 +75,75,67,17,112,105,108,68,97,112,72,35,67,7,40,67,108,108,67,85,14,14,1,1,45,14,108,108,108,67,105,67,17,67,67,67,75,75,75,75,23,28,28,83,112,124,1,45,1,14,34,45,97,67,97,108,114,83,124,124,124 diff --git a/conf/data/proteingym_v1/struc_seq/128/RPC1_LAMBD_Li_2019_high-expression.fasta b/conf/data/proteingym_v1/struc_seq/128/RPC1_LAMBD_Li_2019_high-expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..500e918d2a6fc18ebba75783ff8383ad08bc3c40 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RPC1_LAMBD_Li_2019_high-expression.fasta @@ -0,0 +1,2 @@ +>RPC1_LAMBD_Li_2019_high-expression +24,24,24,24,98,24,60,2,110,36,7,88,83,14,105,85,105,34,93,18,73,1,34,72,35,97,67,100,97,75,100,97,97,39,108,97,67,108,76,39,1,7,7,108,97,108,97,67,17,97,85,67,67,85,9,9,9,45,76,39,39,40,105,67,18,105,1,97,105,105,124,67,97,67,76,85,67,105,39,17,112,35,35,68,68,68,90,90,72,72,72,72,125,125,123,123,121,121,94,41,115,89,62,99,106,91,15,15,122,89,41,41,47,23,2,23,121,121,121,121,121,47,121,2,2,2,116,111,120,62,99,66,21,115,115,5,89,42,42,43,15,50,65,50,15,120,26,31,116,116,61,55,31,104,25,24,42,60,61,31,64,116,116,61,99,91,0,91,0,62,120,61,5,62,64,26,62,5,62,64,29,29,0,16,58,55,55,41,120,103,62,29,29,64,29,29,58,29,25,25,5,64,29,0,29,58,61,116,55,6,69,111,115,29,29,0,61,42,42,5,16,99,99,99,29,29,0,103,54,80,59,53,37,114,110,114,114 diff --git a/conf/data/proteingym_v1/struc_seq/128/RPC1_LAMBD_Li_2019_low-expression.fasta b/conf/data/proteingym_v1/struc_seq/128/RPC1_LAMBD_Li_2019_low-expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8083b6eb8a9a0ae50f7e8da4150dee362bd15fea --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RPC1_LAMBD_Li_2019_low-expression.fasta @@ -0,0 +1,2 @@ +>RPC1_LAMBD_Li_2019_low-expression +24,24,24,24,98,24,60,2,110,36,7,88,83,14,105,85,105,34,93,18,73,1,34,72,35,97,67,100,97,75,100,97,97,39,108,97,67,108,76,39,1,7,7,108,97,108,97,67,17,97,85,67,67,85,9,9,9,45,76,39,39,40,105,67,18,105,1,97,105,105,124,67,97,67,76,85,67,105,39,17,112,35,35,68,68,68,90,90,72,72,72,72,125,125,123,123,121,121,94,41,115,89,62,99,106,91,15,15,122,89,41,41,47,23,2,23,121,121,121,121,121,47,121,2,2,2,116,111,120,62,99,66,21,115,115,5,89,42,42,43,15,50,65,50,15,120,26,31,116,116,61,55,31,104,25,24,42,60,61,31,64,116,116,61,99,91,0,91,0,62,120,61,5,62,64,26,62,5,62,64,29,29,0,16,58,55,55,41,120,103,62,29,29,64,29,29,58,29,25,25,5,64,29,0,29,58,61,116,55,6,69,111,115,29,29,0,61,42,42,5,16,99,99,99,29,29,0,103,54,80,59,53,37,114,110,114,114 diff --git a/conf/data/proteingym_v1/struc_seq/128/RS15_GEOSE_Tsuboyama_2023_1A32.fasta b/conf/data/proteingym_v1/struc_seq/128/RS15_GEOSE_Tsuboyama_2023_1A32.fasta new file mode 100644 index 0000000000000000000000000000000000000000..47df39f7dfdc0d28cfde098f479a6b71c0412b3c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/RS15_GEOSE_Tsuboyama_2023_1A32.fasta @@ -0,0 +1,2 @@ +>RS15_GEOSE_Tsuboyama_2023_1A32 +40,32,32,68,73,32,18,73,73,73,68,73,73,68,68,73,68,90,35,35,127,72,35,72,127,127,127,127,127,127,90,73,73,68,68,73,18,90,73,73,73,73,18,18,35,17,17,35,97,35,72,35,72,17,17,35,40,39,112,12,30,39,40 diff --git a/conf/data/proteingym_v1/struc_seq/128/S22A1_HUMAN_Yee_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/128/S22A1_HUMAN_Yee_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..440c35e33ca49fa8295116d3e780c4e60f114fd1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/S22A1_HUMAN_Yee_2023_abundance.fasta @@ -0,0 +1,2 @@ +>S22A1_HUMAN_Yee_2023_abundance +12,12,32,124,36,83,45,71,76,14,27,107,83,14,108,108,14,112,40,39,32,18,18,32,93,93,93,32,32,93,93,32,32,93,105,34,34,105,45,45,76,85,22,13,5,64,99,16,29,89,55,74,119,112,67,35,67,112,40,17,112,112,39,30,40,30,7,97,107,23,76,13,6,79,71,23,23,121,121,28,28,23,107,79,55,79,16,58,29,16,89,55,95,23,23,94,121,121,23,23,85,27,71,22,47,119,119,119,114,114,121,110,2,98,41,66,66,103,66,120,5,5,5,89,120,120,89,5,26,52,102,118,85,88,6,75,75,119,97,36,33,119,72,97,97,17,17,17,18,93,93,93,93,93,93,93,93,93,32,93,34,32,32,17,32,32,97,97,34,34,67,97,14,14,108,39,34,32,18,32,32,32,18,32,93,18,32,18,93,32,32,32,32,105,112,112,28,124,112,40,34,32,93,93,93,93,93,93,93,93,93,93,93,34,32,32,32,32,32,32,18,14,93,124,14,45,14,67,14,7,7,40,40,68,1,73,73,32,32,93,32,32,32,32,32,18,32,32,32,93,32,73,18,32,34,97,108,27,46,46,83,1,105,32,18,32,32,18,39,18,18,18,35,18,17,35,112,75,125,97,83,83,14,108,1,67,67,17,34,34,34,17,17,18,73,97,17,1,39,40,105,83,1,14,14,14,1,83,9,14,9,14,14,83,40,124,39,12,112,17,73,30,112,112,114,37,98,69,25,69,36,36,125,114,75,75,97,97,17,97,40,112,40,40,1,1,73,32,93,32,93,93,93,93,93,93,32,32,93,32,1,34,93,32,1,105,93,112,9,67,112,28,28,124,32,40,34,93,73,32,93,32,93,32,32,18,32,32,18,18,18,32,18,72,67,108,7,74,7,71,85,14,105,93,93,93,93,93,93,93,93,93,32,93,93,93,32,32,34,124,75,40,28,112,30,30,112,68,40,112,18,32,18,32,93,93,93,93,93,93,93,93,32,93,32,18,1,93,18,1,9,105,14,27,27,45,85,22,13,88,14,124,40,105,1,32,32,32,93,32,32,93,93,93,32,32,32,93,93,105,32,105,1,34,17,97,97,28,72,72,72,39,35,105,32,18,32,32,18,18,93,93,32,93,32,32,18,32,93,124,124,124,13,47,31,47,42,2,47,13,22,47,71,88,71,47,9,83,28,94,95,2,121,98,98,121,121,121,98,121,121,121,98,98,98,98,98,98,24,24,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/S22A1_HUMAN_Yee_2023_activity.fasta b/conf/data/proteingym_v1/struc_seq/128/S22A1_HUMAN_Yee_2023_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..64f0a9ce87df6a9721892a9b8075abb99afa2690 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/S22A1_HUMAN_Yee_2023_activity.fasta @@ -0,0 +1,2 @@ +>S22A1_HUMAN_Yee_2023_activity +12,12,32,124,36,83,45,71,76,14,27,107,83,14,108,108,14,112,40,39,32,18,18,32,93,93,93,32,32,93,93,32,32,93,105,34,34,105,45,45,76,85,22,13,5,64,99,16,29,89,55,74,119,112,67,35,67,112,40,17,112,112,39,30,40,30,7,97,107,23,76,13,6,79,71,23,23,121,121,28,28,23,107,79,55,79,16,58,29,16,89,55,95,23,23,94,121,121,23,23,85,27,71,22,47,119,119,119,114,114,121,110,2,98,41,66,66,103,66,120,5,5,5,89,120,120,89,5,26,52,102,118,85,88,6,75,75,119,97,36,33,119,72,97,97,17,17,17,18,93,93,93,93,93,93,93,93,93,32,93,34,32,32,17,32,32,97,97,34,34,67,97,14,14,108,39,34,32,18,32,32,32,18,32,93,18,32,18,93,32,32,32,32,105,112,112,28,124,112,40,34,32,93,93,93,93,93,93,93,93,93,93,93,34,32,32,32,32,32,32,18,14,93,124,14,45,14,67,14,7,7,40,40,68,1,73,73,32,32,93,32,32,32,32,32,18,32,32,32,93,32,73,18,32,34,97,108,27,46,46,83,1,105,32,18,32,32,18,39,18,18,18,35,18,17,35,112,75,125,97,83,83,14,108,1,67,67,17,34,34,34,17,17,18,73,97,17,1,39,40,105,83,1,14,14,14,1,83,9,14,9,14,14,83,40,124,39,12,112,17,73,30,112,112,114,37,98,69,25,69,36,36,125,114,75,75,97,97,17,97,40,112,40,40,1,1,73,32,93,32,93,93,93,93,93,93,32,32,93,32,1,34,93,32,1,105,93,112,9,67,112,28,28,124,32,40,34,93,73,32,93,32,93,32,32,18,32,32,18,18,18,32,18,72,67,108,7,74,7,71,85,14,105,93,93,93,93,93,93,93,93,93,32,93,93,93,32,32,34,124,75,40,28,112,30,30,112,68,40,112,18,32,18,32,93,93,93,93,93,93,93,93,32,93,32,18,1,93,18,1,9,105,14,27,27,45,85,22,13,88,14,124,40,105,1,32,32,32,93,32,32,93,93,93,32,32,32,93,93,105,32,105,1,34,17,97,97,28,72,72,72,39,35,105,32,18,32,32,18,18,93,93,32,93,32,32,18,32,93,124,124,124,13,47,31,47,42,2,47,13,22,47,71,88,71,47,9,83,28,94,95,2,121,98,98,121,121,121,98,121,121,121,98,98,98,98,98,98,24,24,24,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta b/conf/data/proteingym_v1/struc_seq/128/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d6f2991f0efc444ea4047fe3c2ea0feef1ff3783 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SAV1_MOUSE_Tsuboyama_2023_2YSB.fasta @@ -0,0 +1,2 @@ +>SAV1_MOUSE_Tsuboyama_2023_2YSB +24,24,24,37,2,53,42,111,31,59,66,65,54,115,111,111,111,111,31,115,103,54,66,120,59,4,31,31,53,66,103,115,53,89,60,37,121,121,121,121,121,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/SBI_STAAM_Tsuboyama_2023_2JVG.fasta b/conf/data/proteingym_v1/struc_seq/128/SBI_STAAM_Tsuboyama_2023_2JVG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e8ca908c815000b63fba7415014e02134a13dbac --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SBI_STAAM_Tsuboyama_2023_2JVG.fasta @@ -0,0 +1,2 @@ +>SBI_STAAM_Tsuboyama_2023_2JVG +12,126,36,126,126,108,105,39,39,18,18,73,18,18,34,17,17,17,97,72,40,30,30,30,35,17,68,39,18,18,39,18,34,124,124,1,108,97,30,108,112,40,68,17,18,90,73,18,73,12,39,18,12,68,40,70 diff --git a/conf/data/proteingym_v1/struc_seq/128/SC6A4_HUMAN_Young_2021.fasta b/conf/data/proteingym_v1/struc_seq/128/SC6A4_HUMAN_Young_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e6750ebe943d5e3220c800fe607804e2cf87ea67 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SC6A4_HUMAN_Young_2021.fasta @@ -0,0 +1,2 @@ +>SC6A4_HUMAN_Young_2021 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,25,25,25,25,25,25,25,25,25,25,25,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,121,114,30,30,30,90,127,127,30,114,114,121,98,13,55,13,9,46,88,9,112,18,93,32,93,93,93,93,93,93,93,93,93,93,124,93,93,105,124,32,1,67,105,93,14,93,1,45,14,107,14,45,1,18,32,32,34,34,105,34,105,105,1,1,93,93,93,93,93,93,93,93,93,93,45,45,93,93,45,14,105,93,1,108,45,14,27,22,45,45,45,105,93,105,93,93,93,32,93,93,32,18,93,93,93,93,93,32,32,32,18,32,32,93,93,32,93,18,32,32,32,18,1,124,1,124,9,23,9,45,9,27,27,13,13,47,47,2,74,13,13,69,87,104,69,13,69,94,98,98,98,98,98,60,69,69,69,69,69,104,27,13,107,85,85,85,67,105,67,75,93,67,85,85,9,27,27,107,88,83,104,4,27,27,27,14,14,126,1,32,32,73,18,18,32,68,32,32,73,73,32,18,67,17,105,1,85,85,45,85,76,105,105,34,32,93,32,35,32,93,32,32,32,18,73,32,32,73,73,32,18,18,1,105,93,1,14,1,1,1,105,1,32,105,45,45,14,45,27,14,14,83,83,83,124,127,40,127,17,32,32,32,32,32,32,93,34,105,93,105,105,93,93,32,93,93,93,93,93,45,93,45,45,45,27,27,27,45,9,85,124,105,1,39,32,32,73,73,32,93,18,18,32,32,73,32,34,32,93,93,93,93,93,93,93,32,105,93,105,105,105,105,14,14,112,7,70,1,17,124,28,67,112,124,75,94,23,75,23,75,75,34,1,1,105,105,105,1,1,112,124,1,40,40,124,124,112,18,32,18,32,32,18,93,32,32,32,32,32,93,93,93,32,32,32,32,32,93,1,93,93,93,14,14,1,108,76,7,72,72,72,72,72,72,72,72,97,39,68,39,1,18,68,18,18,73,32,32,32,73,18,93,45,45,105,93,45,27,85,45,93,9,105,34,124,45,105,105,9,85,1,1,105,1,105,105,105,32,32,93,32,32,32,105,67,67,67,67,100,22,85,97,97,7,30,14,14,7,1,14,7,45,45,9,88,7,7,36,110,114,124,124,67,45,105,105,67,67,1,105,34,39,105,32,73,68,18,18,68,35,97,97,125,125,119,37,69,13,69,69,25,24,69,60,13,114,114,30,39,83,39,1,1,1,39,105,67,1,32,32,32,18,18,32,18,68,18,32,73,39,1,112,36,36,83,9,36,36,36,40,126,83,83,71,9,45,45,27,27,107,47,2,98,98,98,37,98,98,98,98,98,98,98,60,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta b/conf/data/proteingym_v1/struc_seq/128/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e57f0013f96a3d7e87b8dc88111174083f8fe008 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SCIN_STAAR_Tsuboyama_2023_2QFF.fasta @@ -0,0 +1,2 @@ +>SCIN_STAAR_Tsuboyama_2023_2QFF +12,112,68,12,32,34,68,73,18,18,68,32,18,90,68,18,73,90,18,34,17,17,112,97,125,28,28,30,30,112,17,70,34,18,18,39,73,32,73,18,18,18,39,1,32,39,40,32,18,124,39,39,32,32,39,73,32,73,18,32,73,68,18,32,12,68,34,73,12,36 diff --git a/conf/data/proteingym_v1/struc_seq/128/SCN5A_HUMAN_Glazer_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/SCN5A_HUMAN_Glazer_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1f1d8aafd1a2f9cae7a8ff8c2969a4eaa18c55b1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SCN5A_HUMAN_Glazer_2019.fasta @@ -0,0 +1,2 @@ +>SCN5A_HUMAN_Glazer_2019 +44,24,24,24,98,95,121,23,104,60,84,120,55,55,29,59,78,30,30,71,36,68,18,34,17,73,73,73,73,68,68,90,90,90,12,90,12,126,126,70,33,42,41,21,5,5,122,122,122,25,69,94,2,2,2,41,42,61,116,64,26,116,116,104,74,74,22,95,104,104,104,2,121,121,116,104,118,102,16,16,16,66,79,2,2,2,69,9,112,85,13,79,120,29,64,116,102,47,116,116,61,19,64,29,16,64,19,116,4,116,104,116,104,22,74,104,47,7,125,124,76,124,93,17,45,45,34,124,88,112,40,70,70,40,68,90,18,68,90,68,73,73,68,73,32,12,70,93,45,9,27,2,121,121,125,30,30,127,90,68,68,68,68,73,68,68,68,18,73,90,18,73,17,17,45,45,85,85,13,104,47,104,104,104,42,42,104,76,74,94,28,35,35,17,68,73,18,73,73,18,73,90,17,18,35,72,35,72,72,125,28,28,121,123,112,40,112,17,32,32,32,32,32,32,32,32,32,32,18,17,17,34,34,112,39,73,73,35,68,73,90,73,32,90,73,18,32,68,73,73,73,17,18,68,73,73,73,68,68,73,18,32,18,32,32,93,93,93,45,45,32,45,14,27,27,102,19,19,64,29,29,58,115,115,115,115,115,25,60,24,111,111,41,59,115,115,25,24,24,41,6,59,33,33,104,6,59,19,94,4,116,2,58,64,58,42,5,60,2,60,60,41,5,26,19,116,19,120,52,60,104,52,116,26,62,115,5,62,62,103,62,99,120,19,102,55,31,55,94,83,4,9,85,107,14,107,14,14,14,124,105,32,32,32,32,105,108,34,67,85,67,39,108,39,40,70,39,73,14,107,27,107,102,102,102,118,85,7,97,35,127,73,17,35,97,34,67,67,97,1,67,105,105,39,1,18,32,18,32,18,18,32,32,18,18,32,68,68,68,68,90,90,90,68,108,70,108,71,71,71,71,126,126,108,70,12,68,68,90,90,68,90,90,90,90,90,90,90,127,127,127,127,72,125,125,121,121,98,24,44,44,44,44,122,122,122,122,122,122,122,122,122,25,56,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,21,21,21,62,41,42,42,122,122,44,44,44,21,21,21,21,122,60,25,44,44,44,44,44,44,21,21,44,44,44,25,41,41,60,61,4,118,71,71,57,122,21,21,21,21,21,42,42,52,43,57,57,114,25,25,122,5,25,25,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,5,25,5,5,115,115,56,56,115,115,115,115,5,122,25,122,25,44,44,44,21,21,21,21,25,25,25,25,25,25,21,21,21,21,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,121,121,121,121,28,123,72,127,125,127,72,127,127,72,72,123,123,123,123,123,123,30,30,127,30,72,72,72,40,28,28,23,28,47,47,23,121,114,30,30,40,112,90,39,34,39,68,18,112,40,112,17,67,39,39,68,17,73,68,90,73,68,90,68,73,68,68,18,18,73,73,32,1,45,27,107,4,55,37,114,30,30,30,30,12,68,73,90,90,68,73,90,68,68,73,68,73,18,73,68,18,18,90,32,105,105,105,1,67,107,108,71,71,108,108,40,40,40,39,39,39,68,18,73,68,18,73,68,73,73,68,73,35,35,127,72,123,123,121,121,123,123,17,73,17,73,18,32,32,32,18,32,18,18,17,17,35,34,17,17,127,73,68,35,17,32,68,68,18,18,35,35,17,72,35,35,17,17,35,18,35,35,73,73,90,73,18,18,93,32,32,32,93,93,105,45,93,105,14,14,105,108,14,83,39,75,28,28,28,121,121,121,121,23,94,69,28,14,1,14,45,45,1,124,105,1,32,105,93,34,39,34,17,105,124,67,34,112,112,83,1,112,83,83,97,67,67,83,7,97,7,108,108,39,90,73,32,18,68,32,34,35,34,18,35,32,18,18,18,32,73,32,32,18,32,18,34,17,18,32,28,28,121,121,121,121,2,2,2,2,121,121,121,28,83,39,39,39,68,68,68,90,90,90,90,90,90,90,90,127,127,127,127,127,127,127,127,127,127,72,72,125,125,7,84,122,122,122,122,24,25,25,24,44,44,44,44,44,122,122,122,122,122,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,21,44,44,44,44,24,44,25,25,5,60,60,98,98,24,24,44,122,116,116,43,43,42,122,44,44,24,24,44,44,44,44,44,44,44,44,24,44,24,44,44,44,44,44,44,44,44,44,44,44,44,25,122,42,122,84,84,84,122,56,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,44,44,44,5,42,42,84,84,57,84,84,57,57,95,121,98,98,121,121,98,98,23,22,27,116,116,102,118,43,57,57,7,114,125,127,72,125,125,119,23,28,28,125,28,125,72,40,72,72,127,17,1,90,73,105,1,32,1,85,83,17,17,97,72,127,127,35,35,68,90,73,68,90,68,73,73,73,18,32,73,73,93,93,105,105,14,83,28,28,72,127,127,127,90,35,35,90,68,73,68,90,68,18,73,68,18,73,73,73,73,73,90,18,18,68,34,105,105,45,14,27,102,118,104,102,107,71,88,108,35,17,39,68,39,18,18,68,18,73,73,18,18,68,73,73,73,35,35,35,35,35,72,35,35,72,72,72,72,17,35,127,73,73,18,32,93,32,32,32,32,32,18,34,17,17,34,17,112,1,39,17,1,32,73,68,18,73,90,73,73,73,68,18,18,68,18,18,73,68,18,18,73,73,18,18,32,32,32,18,93,93,93,27,45,105,27,4,19,19,19,64,58,66,66,59,53,31,2,2,42,60,5,6,6,42,7,7,33,4,79,59,71,33,53,78,108,28,71,28,121,23,47,33,59,51,66,120,55,9,14,107,14,27,27,14,14,14,1,32,18,1,105,67,39,67,67,67,76,97,70,35,127,126,112,17,14,79,14,107,4,4,4,61,19,19,19,19,19,31,4,107,47,107,108,35,97,68,127,18,34,73,35,34,17,97,35,34,17,34,32,18,105,32,93,32,32,18,32,18,32,18,73,18,39,68,112,40,72,72,125,125,125,119,36,124,1,1,1,126,30,40,126,12,40,39,68,90,73,18,30,40,34,23,23,121,60,24,24,24,94,69,9,83,94,83,36,112,124,83,112,1,124,67,17,17,108,30,30,127,70,68,90,90,68,68,68,68,73,73,68,73,18,68,68,34,105,83,27,107,13,2,98,114,30,30,114,30,90,90,68,68,90,68,73,68,90,73,73,68,68,18,73,68,73,73,90,34,34,34,34,34,124,67,72,100,97,97,97,35,35,35,17,68,73,18,73,68,18,18,73,18,18,73,73,73,18,90,73,73,68,70,97,28,125,119,28,114,125,30,108,112,112,34,32,18,32,18,18,32,32,32,32,32,32,32,18,34,34,17,39,39,39,68,39,18,32,73,18,18,32,32,32,18,18,1,105,1,1,1,1,18,73,73,18,68,68,73,18,32,32,32,32,93,93,93,45,105,45,27,27,55,116,116,104,4,47,23,47,42,104,104,76,22,14,107,14,45,45,124,105,105,105,105,105,17,35,34,67,67,34,28,28,67,83,71,107,14,14,27,27,9,13,69,60,60,25,69,41,120,115,58,58,31,111,94,23,111,31,31,61,55,116,22,118,76,70,108,108,39,90,73,18,73,90,32,18,73,39,17,17,17,18,32,105,17,32,32,105,32,1,32,32,32,18,32,18,112,32,34,110,9,104,69,94,9,28,114,30,114,28,40,90,70,1,39,68,40,67,127,35,97,100,72,123,100,74,33,33,107,53,82,76,126,108,72,28,85,85,23,9,9,13,2,13,107,13,23,23,7,28,7,97,125,114,34,108,112,1,82,79,19,58,58,111,42,120,59,79,79,78,108,36,124,73,73,17,67,112,112,112,23,88,57,57,57,57,57,117,36,126,68,73,90,90,68,68,12,90,127,72,127,72,72,125,123,119,121,2,41,41,61,61,59,79,82,108,108,108,68,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,68,90,90,90,12,90,90,90,90,12,12,30,30,114,37,24,24,44,44,44,44,24,37,24,98,98,121,114,30,40,30,30,12,127,12,30,114,114,114,37,24,44,44,122,122,44,44,44,44,44,44,44,44,44,44,44,24,24,56,56,56,60,60,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/SDA_BACSU_Tsuboyama_2023_1PV0.fasta b/conf/data/proteingym_v1/struc_seq/128/SDA_BACSU_Tsuboyama_2023_1PV0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6c8dcad67b2af19d1fa51e29d9e4a069463165d7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SDA_BACSU_Tsuboyama_2023_1PV0.fasta @@ -0,0 +1,2 @@ +>SDA_BACSU_Tsuboyama_2023_1PV0 +44,44,98,114,114,126,30,30,39,39,90,73,73,73,35,35,40,127,72,125,40,30,30,30,40,70,68,68,73,17,72,35,35,72,35,35,72,35,72,100,100,97,125,72 diff --git a/conf/data/proteingym_v1/struc_seq/128/SERC_HUMAN_Xie_2023.fasta b/conf/data/proteingym_v1/struc_seq/128/SERC_HUMAN_Xie_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b6d0a6919559075c3a96091d0e4ecd25825cca7e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SERC_HUMAN_Xie_2023.fasta @@ -0,0 +1,2 @@ +>SERC_HUMAN_Xie_2023 +24,24,24,24,13,52,87,88,55,43,120,19,102,61,116,55,79,88,126,70,70,39,127,39,39,72,72,74,74,74,74,74,4,31,104,31,74,47,107,107,94,94,23,23,121,119,125,28,112,40,68,32,105,73,73,18,105,17,18,32,126,112,85,22,76,88,88,69,47,53,51,51,51,51,51,79,82,51,53,14,124,82,1,1,76,101,27,9,9,102,102,102,4,27,107,4,102,102,20,11,113,52,84,26,43,126,88,87,117,40,112,46,1,1,46,96,76,46,96,20,113,11,11,11,5,42,60,25,24,55,52,116,116,116,111,2,55,2,2,42,31,52,52,42,116,63,102,20,109,3,11,113,84,116,116,116,43,116,64,116,116,5,61,25,69,95,94,52,24,84,52,63,11,81,81,113,113,52,116,116,8,102,27,85,22,87,95,6,95,42,63,63,92,92,50,43,77,79,116,116,104,118,79,55,19,59,59,51,10,48,10,51,53,33,47,4,107,107,22,9,47,2,2,23,13,23,13,9,107,13,107,75,88,47,108,7,83,74,76,76,23,23,82,53,14,14,82,82,105,14,45,32,32,14,105,32,108,105,39,70,70,70,85,85,85,76,108,14,39,85,14,39,18,105,9,68,18,1,83,35,1,82,28,28,83,76,31,31,4,59,19,120,61,19,55,5,116,55,19,33,19,120,19,64,120,61,4,47,64,64,42,59,33,110,30,108,126,70,68,39,126,70,35,40,126,97,46,118,46,118,55,55,33,61,19,31,2,61,61,59,58,64,120,19,79,19,102,55,79,27,1,1,83,1,39,68,18,73,68,68,18,73,12,73,83,40,125,83,36,119 diff --git a/conf/data/proteingym_v1/struc_seq/128/SHOC2_HUMAN_Kwon_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/SHOC2_HUMAN_Kwon_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0f2194d83c0f186adb227628a1a50796a8eae575 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SHOC2_HUMAN_Kwon_2022.fasta @@ -0,0 +1,2 @@ +>SHOC2_HUMAN_Kwon_2022 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,98,98,98,98,98,98,98,121,121,121,23,23,23,23,28,23,70,40,7,40,90,70,39,73,70,67,67,35,72,67,46,8,109,8,113,8,109,8,22,8,8,109,84,87,9,75,34,124,75,105,85,85,101,101,8,109,109,109,109,109,109,109,109,109,109,109,87,87,45,124,85,124,105,85,85,101,8,109,109,109,109,109,109,109,109,109,109,109,113,87,101,45,124,124,105,85,85,22,8,8,109,109,109,109,109,109,109,109,109,109,109,109,8,87,22,75,101,124,105,85,85,8,8,8,109,109,109,109,109,109,109,109,109,109,11,84,87,9,105,124,124,105,85,85,101,8,8,109,109,109,109,109,109,109,109,109,109,109,87,101,9,124,124,124,93,85,85,101,101,8,109,109,109,109,109,109,109,109,109,109,109,8,101,45,105,45,124,105,85,85,101,8,8,109,109,109,109,109,109,109,109,109,109,109,87,101,45,105,124,124,105,85,85,101,8,8,109,109,109,109,109,109,109,109,109,109,11,8,101,9,85,85,124,105,85,85,101,8,109,109,109,109,109,109,109,109,109,109,109,109,113,113,87,9,9,22,85,105,101,85,8,8,109,109,109,109,109,109,109,109,109,109,109,109,52,52,84,22,22,22,85,22,22,22,101,8,109,109,109,109,109,109,109,109,109,109,109,109,84,52,87,23,22,22,85,76,22,22,8,8,109,109,109,109,109,109,109,109,109,109,109,11,84,84,94,23,23,75,75,85,22,8,8,109,109,109,109,109,109,109,109,109,109,109,11,87,87,45,124,85,105,105,85,85,8,8,109,109,109,109,109,109,109,109,109,109,109,109,87,101,9,124,85,124,105,22,85,8,8,109,109,109,109,109,109,109,109,109,109,109,11,52,101,45,124,85,124,105,22,22,8,8,109,109,109,109,109,109,109,109,109,109,109,109,87,101,45,124,124,124,105,22,85,8,8,109,109,109,109,109,109,109,109,109,109,109,109,8,101,45,124,124,124,105,85,85,8,8,8,109,109,109,109,109,8,8,8,8,8,8,8,101,101,124,124,85,124,124,85,22,8,8,113,109,109,109,8,52,8,8,74,74,74,74,7,30,30,28,40,28,40,40,36,36,36,70,112,34,17,34,112,97,34,97,97,97,97,75,119,100,100 diff --git a/conf/data/proteingym_v1/struc_seq/128/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta b/conf/data/proteingym_v1/struc_seq/128/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta new file mode 100644 index 0000000000000000000000000000000000000000..833c3adcd5a36dae63f6e330c046bb2f924654a7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SOX30_HUMAN_Tsuboyama_2023_7JJK.fasta @@ -0,0 +1,2 @@ +>SOX30_HUMAN_Tsuboyama_2023_7JJK +44,13,83,14,1,105,105,39,105,18,17,127,68,73,35,35,17,97,72,72,125,125,125,72,125,112,30,70,35,39,90,73,73,73,90,68,39,40,30,30,30,30,125,30,39,40,73,39,39,39,39,108,14,12,83,88,83 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPA_STAAU_Tsuboyama_2023_1LP1.fasta b/conf/data/proteingym_v1/struc_seq/128/SPA_STAAU_Tsuboyama_2023_1LP1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e19cb489efa067f9358c45be69dc7aceeeb72c25 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPA_STAAU_Tsuboyama_2023_1LP1.fasta @@ -0,0 +1,2 @@ +>SPA_STAAU_Tsuboyama_2023_1LP1 +98,114,112,124,17,34,34,73,32,32,68,18,32,112,36,124,9,83,83,83,114,30,39,112,39,90,32,32,35,35,34,17,127,35,17,17,35,34,18,17,34,32,73,73,18,1,90,39,83,36,36,110,36,94,37 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPG1_STRSG_Olson_2014.fasta b/conf/data/proteingym_v1/struc_seq/128/SPG1_STRSG_Olson_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4f89d940891163777b7dd52bf94c4dc2167cf00e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPG1_STRSG_Olson_2014.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Olson_2014 +44,44,44,24,24,24,24,98,98,98,98,98,98,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,98,121,121,121,121,121,121,121,98,121,98,121,121,98,121,98,121,121,98,98,98,24,24,24,44,24,24,24,56,123,123,123,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,70,39,90,39,39,39,68,18,34,68,73,18,18,68,39,1,97,17,39,67,112,97,72,30,39,18,30,112,32,34,36,124,112,124,1,112,112,1,18,90,73,18,73,90,1,18,68,68,39,68,90,68,70,90,90,127,127,127,127,127,127,35,127,30,35,40,35,30,30,30,30,127,30,127,70,70,39,73,1,1,1,73,18,1,73,68,18,18,68,35,39,70,127,125,114,40,30,30,30,39,18,112,18,32,32,124,1,83,105,1,112,112,1,18,70,18,18,68,90,39,30,30,30,36,69,41,115,120,16,77,50,77,50,91,26,26,42,69,69,26,21,15,15,50,66,66,51,41,79,53,30,114,51,117,90,12,117,70,127,70,126,125,72,36,88,6,104,122,26,15,15,77,69,87,2,52,77,77,77,92,15,26,122,42,95,121,121,121,121,121,121,121,121,23,2,41,120,55,91,77,77,77,50,15,15,26,122,55,42,26,5,92,11,92,91,120,53,41,33,57,30,110,43,117,90,126,117,70,127,70,126,72,127,7,110,6,84,122,5,15,15,77,111,87,110,52,77,77,77,92,15,122,122,122,60,98,98,98,24,24,24,44,44,44,44,44,24,44,24,24,24,122,122,122,122,122,11,11,122,15,41,24,69,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,44,24,24,98,98,98,98,121,121,121,121,98,98,98,24,24,44,44,44,24,24,98,98,121,98,98,98,98,24,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPG1_STRSG_Wu_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/SPG1_STRSG_Wu_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e90e5ff899b1bcdf1207bdc5e9ad6088d9d98e46 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPG1_STRSG_Wu_2016.fasta @@ -0,0 +1,2 @@ +>SPG1_STRSG_Wu_2016 +44,44,44,24,24,24,24,98,98,98,98,98,98,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,98,98,121,121,121,121,121,121,121,98,121,98,121,121,98,121,98,121,121,98,98,98,24,24,24,44,24,24,24,56,123,123,123,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,70,39,90,39,39,39,68,18,34,68,73,18,18,68,39,1,97,17,39,67,112,97,72,30,39,18,30,112,32,34,36,124,112,124,1,112,112,1,18,90,73,18,73,90,1,18,68,68,39,68,90,68,70,90,90,127,127,127,127,127,127,35,127,30,35,40,35,30,30,30,30,127,30,127,70,70,39,73,1,1,1,73,18,1,73,68,18,18,68,35,39,70,127,125,114,40,30,30,30,39,18,112,18,32,32,124,1,83,105,1,112,112,1,18,70,18,18,68,90,39,30,30,30,36,69,41,115,120,16,77,50,77,50,91,26,26,42,69,69,26,21,15,15,50,66,66,51,41,79,53,30,114,51,117,90,12,117,70,127,70,126,125,72,36,88,6,104,122,26,15,15,77,69,87,2,52,77,77,77,92,15,26,122,42,95,121,121,121,121,121,121,121,121,23,2,41,120,55,91,77,77,77,50,15,15,26,122,55,42,26,5,92,11,92,91,120,53,41,33,57,30,110,43,117,90,126,117,70,127,70,126,72,127,7,110,6,84,122,5,15,15,77,111,87,110,52,77,77,77,92,15,122,122,122,60,98,98,98,24,24,24,44,44,44,44,44,24,44,24,24,24,122,122,122,122,122,11,11,122,15,41,24,69,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,44,24,24,98,98,98,98,121,121,121,121,98,98,98,24,24,44,44,44,24,24,98,98,121,98,98,98,98,24,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta b/conf/data/proteingym_v1/struc_seq/128/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8392f203f0910671ba0287f17ecfc1e15c49c0d3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPG2_STRSG_Tsuboyama_2023_5UBS.fasta @@ -0,0 +1,2 @@ +>SPG2_STRSG_Tsuboyama_2023_5UBS +25,15,15,50,15,50,50,15,62,122,25,122,122,21,50,15,50,89,89,53,24,6,6,30,114,57,78,90,12,117,126,127,127,126,72,127,125,125,57,6,15,15,15,15,77,69,87,2,52,52,77,77,50,15,15,122 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPIKE_SARS2_Starr_2020_binding.fasta b/conf/data/proteingym_v1/struc_seq/128/SPIKE_SARS2_Starr_2020_binding.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b51a17a18c6f274bc3710e9575d262613296665d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPIKE_SARS2_Starr_2020_binding.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_binding +44,44,44,44,44,24,24,98,98,98,98,69,55,69,19,116,26,42,42,52,26,26,122,5,21,21,54,0,0,29,29,26,26,106,91,15,15,26,25,122,24,60,55,61,19,61,64,99,80,10,86,99,29,103,29,29,58,19,116,58,29,0,54,54,99,99,62,62,62,115,115,115,24,24,115,5,62,62,62,21,15,62,99,0,29,29,62,58,29,0,65,48,48,48,99,99,115,5,120,62,91,29,29,0,65,65,29,115,41,66,55,61,69,61,58,29,0,65,0,0,29,58,61,5,115,29,0,54,65,0,103,29,0,58,19,64,61,26,106,26,91,91,91,91,41,59,94,23,94,2,111,115,15,91,103,26,106,26,64,19,19,64,29,58,58,103,103,103,65,86,54,103,66,115,5,25,42,55,61,5,55,5,25,5,62,62,62,103,86,48,48,48,65,54,16,58,55,55,111,115,58,0,0,99,65,50,38,103,103,29,64,62,5,5,21,86,122,122,26,122,122,15,99,15,103,54,103,103,16,120,58,55,58,62,29,64,80,65,99,91,29,91,106,91,91,15,84,69,5,5,69,2,111,26,42,42,41,106,62,103,29,62,99,38,48,38,38,99,99,0,62,62,58,16,16,10,10,99,29,64,116,55,61,19,26,21,62,16,79,51,51,79,4,76,51,79,88,13,6,107,51,107,6,53,53,79,78,53,89,120,62,99,66,16,33,59,4,19,55,55,120,106,26,63,15,91,26,26,26,106,26,52,26,52,52,84,57,100,100,100,53,78,119,100,94,106,120,99,26,91,120,26,16,80,54,86,48,80,91,106,106,106,43,8,76,28,100,23,23,28,121,2,60,41,120,10,66,86,66,62,115,41,37,78,97,9,13,13,13,116,106,64,62,62,0,48,48,65,80,99,10,79,79,51,33,82,82,119,95,89,42,104,42,95,95,74,55,4,104,61,61,61,19,42,116,42,52,104,26,62,99,54,48,80,80,10,120,10,55,104,13,55,104,4,84,31,31,116,64,64,106,120,120,19,120,58,61,25,115,61,61,26,116,26,26,42,42,69,42,41,31,61,19,31,55,69,60,2,31,31,31,61,61,31,61,42,61,31,61,61,58,58,58,120,106,19,116,4,104,104,104,2,4,19,13,4,102,51,10,48,48,48,48,65,99,62,62,61,61,61,19,64,26,106,116,52,52,26,25,26,21,21,106,26,62,26,116,106,106,91,106,106,106,106,106,106,106,26,91,64,64,29,29,66,103,25,21,60,115,24,111,61,61,19,29,29,61,95,2,2,2,42,58,58,29,29,64,116,116,55,55,55,41,62,29,29,29,29,62,64,41,55,55,19,16,80,80,80,80,120,120,53,53,2,41,53,55,120,80,48,80,79,19,116,4,31,43,88,75,22,97,67,9,107,27,83,28,88,9,107,23,71,76,119,47,53,76,9,6,25,15,89,62,120,58,42,61,61,16,120,120,26,15,50,15,11,122,11,11,122,122,26,26,26,15,91,42,69,55,106,26,15,64,62,58,61,5,111,60,24,24,24,24,24,24,24,111,111,25,61,64,64,91,92,11,52,26,26,122,122,24,24,24,24,44,44,24,25,21,115,103,0,66,16,64,16,64,16,120,51,16,51,16,10,80,10,79,82,45,45,45,55,13,79,82,27,107,27,85,107,85,105,105,83,7,97,30,34,105,97,12,17,17,72,72,17,72,72,35,17,70,17,1,108,68,18,105,108,73,105,9,39,1,105,83,1,105,45,105,32,105,45,85,45,27,27,13,107,27,88,47,60,24,98,98,98,22,22,76,76,23,22,74,107,27,27,107,4,2,2,2,94,83,107,107,107,107,85,79,71,83,9,88,71,85,85,23,88,36,88,2,121,69,37,114,100,100,72,100,72,97,72,100,100,121,123,23,97,124,74,97,97,124,27,105,85,107,27,53,120,120,5,55,88,9,114,9,14,124,107,27,45,14,27,27,107,45,22,22,27,27,4,4,4,107,22,4,4,27,88,119,95,104,31,4,4,107,76,105,1,76,1,1,105,27,14,67,107,107,22,71,108,39,97,76,39,35,127,127,17,67,108,14,67,108,71,82,108,70,126,108,68,70,40,73,90,70,17,18,30,97,67,67,75,82,97,126,82,1,39,108,108,70,68,40,70,90,68,73,73,73,32,18,127,1,105,23,85,27,14,27,45,9,23,14,23,124,114,36,36,124,36,36,40,40,112,30,40,124,18,68,1,93,18,39,124,32,18,1,32,32,90,73,32,73,73,18,1,73,68,32,73,90,73,18,73,39,14,1,1,1,105,32,1,82,34,34,46,45,85,22,59,27,85,22,102,104,104,104,42,104,116,64,64,26,64,19,19,79,19,16,79,51,79,82,79,102,102,79,79,80,80,80,0,16,29,120,16,64,99,99,99,99,54,0,66,29,91,64,91,91,15,91,5,42,58,91,29,29,62,58,64,61,64,64,29,103,5,115,98,60,62,62,64,64,26,26,64,64,64,64,62,62,64,91,43,43,104,64,29,0,103,0,41,41,106,41,60,106,43,43,106,15,11,11,11,11,57,57,117,30,127,127,127,90,90,90,90,90,90,127,127,127,127,72,72,72,125,119,37,98,24,44,44,44,24,24,24,98,98,98,121,98,98,121,121,123,123,127,127,127,127,90,90,90,90,90,90,90,90,90,127,30,125,114,37,37,24,44,24,24,24,24,24,24,24,24,24,98,98,98,114,114,30,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,30,30,30,114,37,37,24,24,44,44,24,24,44,44,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPIKE_SARS2_Starr_2020_expression.fasta b/conf/data/proteingym_v1/struc_seq/128/SPIKE_SARS2_Starr_2020_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..29330b301b1666d42f08a3fc1710bd70396b39ec --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPIKE_SARS2_Starr_2020_expression.fasta @@ -0,0 +1,2 @@ +>SPIKE_SARS2_Starr_2020_expression +44,44,44,44,44,24,24,98,98,98,98,69,55,69,19,116,26,42,42,52,26,26,122,5,21,21,54,0,0,29,29,26,26,106,91,15,15,26,25,122,24,60,55,61,19,61,64,99,80,10,86,99,29,103,29,29,58,19,116,58,29,0,54,54,99,99,62,62,62,115,115,115,24,24,115,5,62,62,62,21,15,62,99,0,29,29,62,58,29,0,65,48,48,48,99,99,115,5,120,62,91,29,29,0,65,65,29,115,41,66,55,61,69,61,58,29,0,65,0,0,29,58,61,5,115,29,0,54,65,0,103,29,0,58,19,64,61,26,106,26,91,91,91,91,41,59,94,23,94,2,111,115,15,91,103,26,106,26,64,19,19,64,29,58,58,103,103,103,65,86,54,103,66,115,5,25,42,55,61,5,55,5,25,5,62,62,62,103,86,48,48,48,65,54,16,58,55,55,111,115,58,0,0,99,65,50,38,103,103,29,64,62,5,5,21,86,122,122,26,122,122,15,99,15,103,54,103,103,16,120,58,55,58,62,29,64,80,65,99,91,29,91,106,91,91,15,84,69,5,5,69,2,111,26,42,42,41,106,62,103,29,62,99,38,48,38,38,99,99,0,62,62,58,16,16,10,10,99,29,64,116,55,61,19,26,21,62,16,79,51,51,79,4,76,51,79,88,13,6,107,51,107,6,53,53,79,78,53,89,120,62,99,66,16,33,59,4,19,55,55,120,106,26,63,15,91,26,26,26,106,26,52,26,52,52,84,57,100,100,100,53,78,119,100,94,106,120,99,26,91,120,26,16,80,54,86,48,80,91,106,106,106,43,8,76,28,100,23,23,28,121,2,60,41,120,10,66,86,66,62,115,41,37,78,97,9,13,13,13,116,106,64,62,62,0,48,48,65,80,99,10,79,79,51,33,82,82,119,95,89,42,104,42,95,95,74,55,4,104,61,61,61,19,42,116,42,52,104,26,62,99,54,48,80,80,10,120,10,55,104,13,55,104,4,84,31,31,116,64,64,106,120,120,19,120,58,61,25,115,61,61,26,116,26,26,42,42,69,42,41,31,61,19,31,55,69,60,2,31,31,31,61,61,31,61,42,61,31,61,61,58,58,58,120,106,19,116,4,104,104,104,2,4,19,13,4,102,51,10,48,48,48,48,65,99,62,62,61,61,61,19,64,26,106,116,52,52,26,25,26,21,21,106,26,62,26,116,106,106,91,106,106,106,106,106,106,106,26,91,64,64,29,29,66,103,25,21,60,115,24,111,61,61,19,29,29,61,95,2,2,2,42,58,58,29,29,64,116,116,55,55,55,41,62,29,29,29,29,62,64,41,55,55,19,16,80,80,80,80,120,120,53,53,2,41,53,55,120,80,48,80,79,19,116,4,31,43,88,75,22,97,67,9,107,27,83,28,88,9,107,23,71,76,119,47,53,76,9,6,25,15,89,62,120,58,42,61,61,16,120,120,26,15,50,15,11,122,11,11,122,122,26,26,26,15,91,42,69,55,106,26,15,64,62,58,61,5,111,60,24,24,24,24,24,24,24,111,111,25,61,64,64,91,92,11,52,26,26,122,122,24,24,24,24,44,44,24,25,21,115,103,0,66,16,64,16,64,16,120,51,16,51,16,10,80,10,79,82,45,45,45,55,13,79,82,27,107,27,85,107,85,105,105,83,7,97,30,34,105,97,12,17,17,72,72,17,72,72,35,17,70,17,1,108,68,18,105,108,73,105,9,39,1,105,83,1,105,45,105,32,105,45,85,45,27,27,13,107,27,88,47,60,24,98,98,98,22,22,76,76,23,22,74,107,27,27,107,4,2,2,2,94,83,107,107,107,107,85,79,71,83,9,88,71,85,85,23,88,36,88,2,121,69,37,114,100,100,72,100,72,97,72,100,100,121,123,23,97,124,74,97,97,124,27,105,85,107,27,53,120,120,5,55,88,9,114,9,14,124,107,27,45,14,27,27,107,45,22,22,27,27,4,4,4,107,22,4,4,27,88,119,95,104,31,4,4,107,76,105,1,76,1,1,105,27,14,67,107,107,22,71,108,39,97,76,39,35,127,127,17,67,108,14,67,108,71,82,108,70,126,108,68,70,40,73,90,70,17,18,30,97,67,67,75,82,97,126,82,1,39,108,108,70,68,40,70,90,68,73,73,73,32,18,127,1,105,23,85,27,14,27,45,9,23,14,23,124,114,36,36,124,36,36,40,40,112,30,40,124,18,68,1,93,18,39,124,32,18,1,32,32,90,73,32,73,73,18,1,73,68,32,73,90,73,18,73,39,14,1,1,1,105,32,1,82,34,34,46,45,85,22,59,27,85,22,102,104,104,104,42,104,116,64,64,26,64,19,19,79,19,16,79,51,79,82,79,102,102,79,79,80,80,80,0,16,29,120,16,64,99,99,99,99,54,0,66,29,91,64,91,91,15,91,5,42,58,91,29,29,62,58,64,61,64,64,29,103,5,115,98,60,62,62,64,64,26,26,64,64,64,64,62,62,64,91,43,43,104,64,29,0,103,0,41,41,106,41,60,106,43,43,106,15,11,11,11,11,57,57,117,30,127,127,127,90,90,90,90,90,90,127,127,127,127,72,72,72,125,119,37,98,24,44,44,44,24,24,24,98,98,98,121,98,98,121,121,123,123,127,127,127,127,90,90,90,90,90,90,90,90,90,127,30,125,114,37,37,24,44,24,24,24,24,24,24,24,24,24,98,98,98,114,114,30,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,30,30,30,114,37,37,24,24,44,44,24,24,44,44,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta b/conf/data/proteingym_v1/struc_seq/128/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9ea0d17df0690c0f5ad1a02bba64aed12e5fff1f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SPTN1_CHICK_Tsuboyama_2023_1TUD.fasta @@ -0,0 +1,2 @@ +>SPTN1_CHICK_Tsuboyama_2023_1TUD +44,86,99,99,99,66,66,61,29,29,66,54,0,21,25,24,24,24,5,115,0,0,29,58,64,61,61,61,62,5,25,42,42,89,89,21,5,64,64,61,64,64,29,0,54,65,0,99,66,60,41,2,53,66,66,99,54,86,86,103 diff --git a/conf/data/proteingym_v1/struc_seq/128/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta b/conf/data/proteingym_v1/struc_seq/128/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ef1ef9fd2a1cb8e7f85ad1bf9921a77ee085ca41 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SQSTM_MOUSE_Tsuboyama_2023_2RRU.fasta @@ -0,0 +1,2 @@ +>SQSTM_MOUSE_Tsuboyama_2023_2RRU +97,112,39,39,17,112,125,68,40,70,30,30,125,125,125,125,119,123,72,72,67,17,35,17,17,17,17,35,112,17,17,17,35,35,17,40,12,39,39,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/SR43C_ARATH_Tsuboyama_2023_2N88.fasta b/conf/data/proteingym_v1/struc_seq/128/SR43C_ARATH_Tsuboyama_2023_2N88.fasta new file mode 100644 index 0000000000000000000000000000000000000000..db5c504674ccb513fe09cb80436206c30b7c0435 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SR43C_ARATH_Tsuboyama_2023_2N88.fasta @@ -0,0 +1,2 @@ +>SR43C_ARATH_Tsuboyama_2023_2N88 +25,5,5,5,58,58,58,103,66,0,66,66,111,2,111,111,6,66,66,66,103,29,103,115,5,25,25,24,115,103,103,0,0,103,66,41,41,59,110,30,126,110,6,30,126,78,114,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta b/conf/data/proteingym_v1/struc_seq/128/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta new file mode 100644 index 0000000000000000000000000000000000000000..56089223f7d59742ac150d3b30593375c802e238 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SRBS1_HUMAN_Tsuboyama_2023_2O2W.fasta @@ -0,0 +1,2 @@ +>SRBS1_HUMAN_Tsuboyama_2023_2O2W +98,98,13,69,61,64,29,65,0,0,58,29,61,62,62,21,5,24,5,5,5,103,62,5,62,62,64,29,64,103,0,0,0,0,99,103,115,41,41,53,66,115,0,0,103,115,115,60,60,24,21,103,29,29,115,89,66,61,29,66,66,29,65,29,29,29,61 diff --git a/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Ahler_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Ahler_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b037fcd796602990f6bd2ff96f550474cddfe3d5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Ahler_2019.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Ahler_2019 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,98,24,60,61,0,0,16,58,58,61,64,62,62,5,69,55,5,5,62,21,62,64,64,64,64,58,0,0,0,0,29,115,41,60,95,47,41,41,58,29,0,0,103,0,41,115,111,115,62,29,29,29,115,58,61,58,16,51,66,66,2,2,121,2,2,47,13,87,77,84,77,84,84,57,78,40,40,53,53,83,13,59,79,13,23,2,43,42,64,106,19,16,106,77,15,89,66,60,41,115,60,111,115,99,50,80,80,91,16,29,115,111,2,2,111,25,41,29,16,29,66,120,99,80,29,66,66,111,111,42,41,41,58,115,55,69,69,60,41,53,59,33,51,126,30,78,71,126,76,76,88,75,74,74,95,9,4,5,116,104,102,116,116,52,116,55,55,25,25,69,55,31,116,116,106,106,120,52,52,52,42,104,95,41,60,111,66,29,103,103,62,29,103,62,115,64,31,58,58,29,0,29,103,0,29,120,55,58,69,55,62,29,0,0,0,0,66,41,41,2,31,33,107,71,40,108,108,39,90,68,40,127,70,23,88,94,13,94,13,55,43,13,64,26,120,106,106,16,16,53,79,69,47,51,80,80,0,0,62,29,64,26,31,104,19,79,13,27,27,124,75,67,100,100,124,94,94,124,28,36,112,112,32,18,34,105,32,32,14,45,32,1,9,14,18,112,14,108,17,97,71,14,107,107,4,47,107,14,107,4,61,19,19,59,61,42,94,13,102,102,19,79,19,31,33,71,71,47,107,33,107,47,4,2,2,2,47,22,22,23,23,22,104,22,13,9,9,107,85,45,67,9,88,9,75,75,94,75,88,107,14,9,27,27,45,45,45,93,32,14,105,105,83,14,105,9,9,124,83,83,23,23,2,60,2,110,83,23,36,40,83,76,70,7,85,76,125,75,36,94,94,37,110,110,2,2,36,110,114,70,1,112,73,34,34,124,45,124,124,45,83,83,9,94,94,45,124,32,18,39,39,32,18,18,18,17,34,75,112,75,121,98,98,24,60,42,89,69,55,55,9,13,9 diff --git a/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta b/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..14aed1c96e59c54b54e14d71c6675fdc405487db --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Chakraborty_2023_binding-DAS_25uM +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,98,24,60,61,0,0,16,58,58,61,64,62,62,5,69,55,5,5,62,21,62,64,64,64,64,58,0,0,0,0,29,115,41,60,95,47,41,41,58,29,0,0,103,0,41,115,111,115,62,29,29,29,115,58,61,58,16,51,66,66,2,2,121,2,2,47,13,87,77,84,77,84,84,57,78,40,40,53,53,83,13,59,79,13,23,2,43,42,64,106,19,16,106,77,15,89,66,60,41,115,60,111,115,99,50,80,80,91,16,29,115,111,2,2,111,25,41,29,16,29,66,120,99,80,29,66,66,111,111,42,41,41,58,115,55,69,69,60,41,53,59,33,51,126,30,78,71,126,76,76,88,75,74,74,95,9,4,5,116,104,102,116,116,52,116,55,55,25,25,69,55,31,116,116,106,106,120,52,52,52,42,104,95,41,60,111,66,29,103,103,62,29,103,62,115,64,31,58,58,29,0,29,103,0,29,120,55,58,69,55,62,29,0,0,0,0,66,41,41,2,31,33,107,71,40,108,108,39,90,68,40,127,70,23,88,94,13,94,13,55,43,13,64,26,120,106,106,16,16,53,79,69,47,51,80,80,0,0,62,29,64,26,31,104,19,79,13,27,27,124,75,67,100,100,124,94,94,124,28,36,112,112,32,18,34,105,32,32,14,45,32,1,9,14,18,112,14,108,17,97,71,14,107,107,4,47,107,14,107,4,61,19,19,59,61,42,94,13,102,102,19,79,19,31,33,71,71,47,107,33,107,47,4,2,2,2,47,22,22,23,23,22,104,22,13,9,9,107,85,45,67,9,88,9,75,75,94,75,88,107,14,9,27,27,45,45,45,93,32,14,105,105,83,14,105,9,9,124,83,83,23,23,2,60,2,110,83,23,36,40,83,76,70,7,85,76,125,75,36,94,94,37,110,110,2,2,36,110,114,70,1,112,73,34,34,124,45,124,124,45,83,83,9,94,94,45,124,32,18,39,39,32,18,18,18,17,34,75,112,75,121,98,98,24,60,42,89,69,55,55,9,13,9 diff --git a/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Nguyen_2022.fasta b/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Nguyen_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bc9906b10fb278fb774195c2b5f766fb1c04848e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SRC_HUMAN_Nguyen_2022.fasta @@ -0,0 +1,2 @@ +>SRC_HUMAN_Nguyen_2022 +44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,24,98,24,60,61,0,0,16,58,58,61,64,62,62,5,69,55,5,5,62,21,62,64,64,64,64,58,0,0,0,0,29,115,41,60,95,47,41,41,58,29,0,0,103,0,41,115,111,115,62,29,29,29,115,58,61,58,16,51,66,66,2,2,121,2,2,47,13,87,77,84,77,84,84,57,78,40,40,53,53,83,13,59,79,13,23,2,43,42,64,106,19,16,106,77,15,89,66,60,41,115,60,111,115,99,50,80,80,91,16,29,115,111,2,2,111,25,41,29,16,29,66,120,99,80,29,66,66,111,111,42,41,41,58,115,55,69,69,60,41,53,59,33,51,126,30,78,71,126,76,76,88,75,74,74,95,9,4,5,116,104,102,116,116,52,116,55,55,25,25,69,55,31,116,116,106,106,120,52,52,52,42,104,95,41,60,111,66,29,103,103,62,29,103,62,115,64,31,58,58,29,0,29,103,0,29,120,55,58,69,55,62,29,0,0,0,0,66,41,41,2,31,33,107,71,40,108,108,39,90,68,40,127,70,23,88,94,13,94,13,55,43,13,64,26,120,106,106,16,16,53,79,69,47,51,80,80,0,0,62,29,64,26,31,104,19,79,13,27,27,124,75,67,100,100,124,94,94,124,28,36,112,112,32,18,34,105,32,32,14,45,32,1,9,14,18,112,14,108,17,97,71,14,107,107,4,47,107,14,107,4,61,19,19,59,61,42,94,13,102,102,19,79,19,31,33,71,71,47,107,33,107,47,4,2,2,2,47,22,22,23,23,22,104,22,13,9,9,107,85,45,67,9,88,9,75,75,94,75,88,107,14,9,27,27,45,45,45,93,32,14,105,105,83,14,105,9,9,124,83,83,23,23,2,60,2,110,83,23,36,40,83,76,70,7,85,76,125,75,36,94,94,37,110,110,2,2,36,110,114,70,1,112,73,34,34,124,45,124,124,45,83,83,9,94,94,45,124,32,18,39,39,32,18,18,18,17,34,75,112,75,121,98,98,24,60,42,89,69,55,55,9,13,9 diff --git a/conf/data/proteingym_v1/struc_seq/128/SUMO1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/SUMO1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..296f15fa3aeb0e05d0f87fd7aff565ce35888c96 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SUMO1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>SUMO1_HUMAN_Weile_2017 +44,44,44,44,24,98,98,98,98,98,24,24,24,24,98,98,98,2,60,116,64,26,91,91,92,50,50,50,84,84,52,42,15,15,15,0,91,58,61,31,31,4,107,33,88,108,36,83,39,35,36,70,40,70,7,125,7,97,88,47,2,53,16,77,50,77,5,89,89,120,53,61,88,47,47,47,116,104,74,74,74,43,52,11,92,106,91,92,91,77,77,53,53,111,2,121,98,98,98,98,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/SYUA_HUMAN_Newberry_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/SYUA_HUMAN_Newberry_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..200f1678970453e59a202990acc9f133ffc25e30 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/SYUA_HUMAN_Newberry_2020.fasta @@ -0,0 +1,2 @@ +>SYUA_HUMAN_Newberry_2020 +12,12,12,12,12,12,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,72,72,125,114,121,121,121,121,114,30,30,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,127,123,72,123,121,98,98,98,24,24,98,24,24,24,24,24,24,44,44,44,44,24,24,24,24,98,98,98,98,98,98,98,98,98,98,98,98,98,98,98,98,121,121,98,98,98,98,98,24,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/TADBP_HUMAN_Bolognesi_2019.fasta b/conf/data/proteingym_v1/struc_seq/128/TADBP_HUMAN_Bolognesi_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8ddeee55bb63a9cdf05fe0bff71bf53d6e7adfb5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TADBP_HUMAN_Bolognesi_2019.fasta @@ -0,0 +1,2 @@ +>TADBP_HUMAN_Bolognesi_2019 +115,115,58,62,29,91,91,15,89,122,122,24,122,115,15,62,62,58,62,58,120,61,31,5,120,59,59,53,74,88,6,7,100,94,33,71,6,33,4,29,91,54,91,115,66,31,2,111,111,111,115,103,103,103,62,29,61,55,6,59,120,58,120,41,2,2,31,42,42,42,106,91,91,0,106,64,61,31,94,94,75,94,98,24,24,44,44,44,44,24,24,24,98,98,98,2,56,121,121,23,119,69,6,115,54,80,80,80,80,10,120,41,58,55,47,33,53,110,126,78,78,70,7,82,7,125,108,36,104,33,66,54,66,10,66,61,58,2,111,47,111,2,2,58,58,58,99,80,65,80,66,59,42,13,71,83,107,51,78,108,82,53,6,42,66,66,103,59,111,25,21,115,99,80,10,80,99,99,61,55,61,55,60,98,98,98,24,31,55,55,19,120,16,80,80,80,80,120,111,2,2,2,110,53,126,126,51,33,40,7,107,7,75,108,71,47,33,58,16,10,10,120,111,2,2,2,42,41,120,80,38,80,16,79,31,4,4,83,4,79,82,76,13,53,42,59,58,59,61,6,69,111,5,5,99,80,10,10,10,120,60,98,121,121,123,121,121,121,56,98,24,24,44,44,44,44,44,44,44,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,121,121,121,30,30,30,30,30,30,30,114,121,121,98,98,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/TAT_HV1BR_Fernandes_2016.fasta b/conf/data/proteingym_v1/struc_seq/128/TAT_HV1BR_Fernandes_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..dd7b6b8b6213c7262b361788566dece558abb530 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TAT_HV1BR_Fernandes_2016.fasta @@ -0,0 +1,2 @@ +>TAT_HV1BR_Fernandes_2016 +60,44,24,60,60,2,2,2,121,2,37,37,98,2,60,25,24,60,5,25,25,69,69,13,9,75,28,75,23,75,75,75,94,94,88,75,75,75,100,75,75,67,100,100,100,37,24,24,98,98,98,98,98,98,24,24,24,24,24,24,24,24,98,98,56,121,121,121,121,98,98,98,98,98,121,121,121,121,98,98,98,24,24,44,44,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta b/conf/data/proteingym_v1/struc_seq/128/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta new file mode 100644 index 0000000000000000000000000000000000000000..54c8737e9f32b2b91bd53634f42f6d9025e79537 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TCRG1_MOUSE_Tsuboyama_2023_1E0L.fasta @@ -0,0 +1,2 @@ +>TCRG1_MOUSE_Tsuboyama_2023_1E0L +98,9,9,13,13,9,79,59,16,54,0,115,115,111,111,111,111,115,103,0,0,59,59,4,31,31,115,66,54,103,89,53,66,94,9,94,9 diff --git a/conf/data/proteingym_v1/struc_seq/128/THO1_YEAST_Tsuboyama_2023_2WQG.fasta b/conf/data/proteingym_v1/struc_seq/128/THO1_YEAST_Tsuboyama_2023_2WQG.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0acfe12b9b301e95d4a67d9129eb4d8a3b25fe86 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/THO1_YEAST_Tsuboyama_2023_2WQG.fasta @@ -0,0 +1,2 @@ +>THO1_YEAST_Tsuboyama_2023_2WQG +114,126,28,83,83,23,28,40,112,70,30,39,112,35,1,39,72,70,72,125,40,36,75,94,121,36,112,1,28,112,39,70,39,39,12,12,70,12,12,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta b/conf/data/proteingym_v1/struc_seq/128/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3b2648cad80410c32b4042383c5eebd01216b931 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TNKS2_HUMAN_Tsuboyama_2023_5JRT.fasta @@ -0,0 +1,2 @@ +>TNKS2_HUMAN_Tsuboyama_2023_5JRT +114,78,126,108,125,67,34,35,17,34,17,17,35,72,97,35,127,97,97,72,35,97,125,97,126,36,75,114,124,75,83,67,83,108,7,28,83,28,127,97,97,39,40,72,40,30,112,40,70,68,105,112,68,18,34,40,12,34,40 diff --git a/conf/data/proteingym_v1/struc_seq/128/TPK1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/TPK1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fb3bc767c3b3bdcd1bb0c681bb96867508bc677c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TPK1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>TPK1_HUMAN_Weile_2017 +11,15,92,11,113,57,77,43,98,87,9,9,9,98,98,69,52,11,49,81,81,81,3,20,102,6,84,57,84,119,9,83,28,112,118,113,110,87,49,3,49,81,49,3,20,20,101,20,20,46,46,22,67,83,74,28,7,72,100,67,76,119,23,101,49,63,49,20,96,87,87,87,22,76,46,83,28,70,70,108,7,39,46,117,30,83,96,96,3,113,3,113,87,95,94,94,37,75,124,101,101,1,101,96,46,39,46,96,108,35,70,117,72,127,125,125,57,8,109,63,109,81,81,81,92,122,87,84,94,94,36,36,30,97,40,40,112,108,108,39,39,82,40,17,9,119,40,112,83,113,11,63,63,92,92,50,122,5,62,99,50,10,38,10,91,64,62,106,92,92,50,77,43,53,47,23,47,6,58,29,62,0,0,65,38,65,80,10,42,5,41,58,29,29,29,99,10,66,66,89,115,115,66,21,62,62,64,62,99,89,60,60,89,89,89,21,103,29,0,29,58,41,31,19,47,19,16,50,50,91,64,64,64,120,99,80,48,48,0,29,99,29,59 diff --git a/conf/data/proteingym_v1/struc_seq/128/TPMT_HUMAN_Matreyek_2018.fasta b/conf/data/proteingym_v1/struc_seq/128/TPMT_HUMAN_Matreyek_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ab8865c3f220e78cfc2ba44fc391fd11d7b59dc7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TPMT_HUMAN_Matreyek_2018.fasta @@ -0,0 +1,2 @@ +>TPMT_HUMAN_Matreyek_2018 +44,44,44,44,44,24,98,56,98,2,121,2,2,23,23,23,28,28,94,9,9,13,69,2,114,88,112,30,75,17,97,35,17,17,72,72,72,75,119,23,121,121,110,110,126,110,125,37,117,72,72,127,72,100,100,100,118,119,119,104,52,63,63,49,81,81,3,113,84,113,101,76,76,7,7,20,76,7,96,96,108,118,8,20,20,49,81,3,113,8,101,85,107,14,67,118,76,17,97,82,7,97,97,125,71,59,59,65,54,86,66,58,111,47,31,2,60,41,115,50,50,0,58,66,19,52,20,92,92,77,77,43,43,104,96,112,9,88,112,23,23,22,57,104,52,109,63,92,81,3,113,113,87,84,47,42,47,9,13,13,76,67,67,17,17,34,17,18,73,46,57,117,57,63,63,26,15,91,50,50,50,77,10,120,10,66,120,59,104,47,13,13,94,13,13,69,13,13,13,6,78,100,75,85,119,97,97,71,78,6,59,66,103,66,38,38,48,38,38,86,38,38,10,53,114,125,37,114,36,88,88,33,53,115,86,54,38,86,38,38,38,50,65,103,0 diff --git a/conf/data/proteingym_v1/struc_seq/128/TPOR_HUMAN_Bridgford_2020.fasta b/conf/data/proteingym_v1/struc_seq/128/TPOR_HUMAN_Bridgford_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..492eebfdec76a1ec8fb37f04c0a9de2bbb975a94 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TPOR_HUMAN_Bridgford_2020.fasta @@ -0,0 +1,2 @@ +>TPOR_HUMAN_Bridgford_2020 +44,24,24,24,98,98,98,98,121,121,121,123,123,123,121,121,121,121,98,60,25,69,53,28,125,119,88,119,72,71,43,30,28,121,98,60,25,21,120,99,77,77,52,87,102,13,120,120,38,48,38,54,99,5,26,122,21,60,24,24,2,6,53,0,65,65,65,86,86,21,24,25,25,86,54,103,54,103,54,99,86,21,115,120,111,111,26,5,21,54,86,38,54,86,66,89,53,69,69,25,55,55,55,61,5,115,103,65,48,65,54,80,59,59,4,31,31,53,66,66,103,54,86,38,89,120,106,116,106,106,63,52,106,106,99,99,103,62,103,86,86,86,91,99,99,26,26,26,62,99,38,48,65,54,120,120,43,104,88,28,47,79,47,2,59,51,80,65,65,48,38,86,89,10,41,121,121,98,98,98,60,60,86,86,38,38,10,80,41,59,2,60,10,41,41,41,2,98,121,98,98,98,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,98,121,121,121,121,2,69,120,80,10,10,38,99,21,5,62,64,64,64,64,99,38,38,48,38,38,38,99,99,43,89,19,2,4,19,116,63,52,62,91,0,54,86,86,38,86,38,86,91,91,106,106,43,120,43,43,43,53,99,16,50,15,77,122,122,120,41,86,99,38,48,38,10,89,66,115,5,25,66,99,86,65,65,54,54,54,103,103,115,115,24,98,60,24,60,60,24,24,25,21,86,86,103,54,21,103,115,89,98,98,98,98,98,98,98,98,60,25,66,86,38,54,86,86,86,80,115,69,61,62,103,99,65,80,54,50,65,38,80,66,111,111,89,89,38,29,99,77,77,15,15,86,66,120,106,116,26,106,63,11,106,15,99,99,21,54,38,54,86,99,10,61,61,61,62,54,65,65,54,54,115,53,53,2,121,121,55,55,55,55,19,16,54,48,48,65,38,86,86,38,60,89,24,21,86,86,38,38,54,54,62,58,55,62,62,103,0,38,65,58,16,64,64,61,62,62,54,38,65,65,38,86,99,99,106,120,64,42,19,116,26,26,26,21,86,54,38,86,103,54,86,38,38,62,61,61,31,71,7,127,127,127,127,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,90,127,127,127,127,127,90,90,90,127,72,72,72,72,100,119,119,98,114,114,30,30,127,127,90,90,90,90,90,90,12,30,30,114,114,37,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,44,24,24,44,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,98,98,98,98,121,121,98,98,24,98,24,24,44,24,60,25,25,99,54,54,62,115,58 diff --git a/conf/data/proteingym_v1/struc_seq/128/TRPC_SACS2_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/TRPC_SACS2_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7e7d7abf31b7c43d9f0e0ef1eee050313d048bb0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TRPC_SACS2_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_SACS2_Chan_2017 +120,6,41,89,110,37,114,126,126,126,30,126,71,70,36,94,110,114,94,94,94,13,116,102,52,102,102,87,52,52,63,63,20,20,108,108,101,105,39,46,108,127,72,125,118,102,20,49,81,3,3,20,26,61,61,116,31,31,25,31,31,5,42,6,88,36,112,112,36,101,76,108,118,118,76,118,20,20,49,49,81,49,63,43,116,104,4,4,116,116,116,57,101,67,45,101,85,105,45,102,9,83,118,84,87,63,49,81,3,81,11,113,87,88,36,124,110,88,46,27,27,101,102,104,85,102,20,63,20,109,81,3,52,87,55,55,6,88,14,36,110,46,112,39,112,46,97,97,46,117,72,46,118,96,96,20,81,49,109,113,87,46,126,126,46,117,30,67,46,71,67,112,85,8,8,49,109,81,3,52,52,55,42,107,2,2,47,31,31,6,110,70,71,118,1,112,36,101,124,30,117,47,104,52,52,20,49,81,3,11,122,122,84,94,36,126,30,30,117,39,68,46,126,30,112,87,20,96,20,49,81,3,113,42,57,117,6,119,72,35,35,97,76,97,76,88,27,82 diff --git a/conf/data/proteingym_v1/struc_seq/128/TRPC_THEMA_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/TRPC_THEMA_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a95509cefc9543693a79dcdfdb2baf8acc12c265 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/TRPC_THEMA_Chan_2017.fasta @@ -0,0 +1,2 @@ +>TRPC_THEMA_Chan_2017 +126,40,108,40,39,12,40,40,90,40,126,30,12,30,28,40,30,112,23,83,9,2,107,107,107,102,102,102,118,118,96,63,102,23,13,20,87,43,116,55,102,102,106,49,81,3,3,113,102,19,19,19,33,31,19,31,31,4,55,55,95,94,28,112,112,40,124,118,67,1,101,22,85,108,118,63,49,49,81,49,52,43,116,118,4,4,19,116,116,57,101,105,46,101,67,93,45,9,112,112,46,113,102,20,49,81,3,81,113,84,87,88,112,34,124,124,101,45,9,101,102,27,45,27,20,20,3,49,81,3,11,87,13,9,9,83,83,83,9,46,126,67,46,118,76,35,46,118,71,102,102,118,20,20,81,49,81,87,87,88,126,40,36,117,67,83,96,36,112,112,75,87,52,63,63,109,81,3,11,104,31,55,107,107,13,47,47,31,13,6,70,47,87,17,97,36,88,36,30,57,104,98,52,52,63,49,81,81,81,122,52,87,94,45,105,34,75,101,85,76,4,4,4,4,20,63,63,81,81,3,3,52,87,88,87,85,67,28,28,17,1,112,124,105,1,105,45,27,105,14,101,27 diff --git a/conf/data/proteingym_v1/struc_seq/128/UBC9_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/128/UBC9_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b6e0e75939f0e8ba6847dbdb1979198b3e221e99 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/UBC9_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>UBC9_HUMAN_Weile_2017 +83,36,108,40,108,112,68,39,39,68,68,68,70,90,126,110,114,30,110,37,42,25,21,16,65,80,66,16,66,61,61,111,111,111,111,61,61,33,19,103,0,65,65,65,66,19,19,47,2,2,9,14,27,102,4,4,120,16,0,65,65,0,0,59,6,36,110,71,2,47,104,55,120,0,103,0,0,0,120,58,19,107,107,107,4,19,19,116,116,58,29,19,19,4,95,47,42,42,104,104,95,104,104,104,94,2,23,108,71,110,30,71,78,126,90,108,71,72,71,88,88,28,47,47,47,55,55,4,4,33,71,71,71,107,76,97,97,67,72,72,72,127,127,17,17,73,32,105,1,1,85,27,107,71,4,4,55,25,44 diff --git a/conf/data/proteingym_v1/struc_seq/128/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta b/conf/data/proteingym_v1/struc_seq/128/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..60dc0896e44acb234328b70187a225f45dd78cef --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/UBE4B_HUMAN_Tsuboyama_2023_3L1X.fasta @@ -0,0 +1,2 @@ +>UBE4B_HUMAN_Tsuboyama_2023_3L1X +60,31,94,31,4,4,31,31,116,33,116,31,116,116,4,4,79,59,16,58,58,58,31,111,31,16,59,59,51,110,126,53,7,90,30,110,125,125,74,74,74,31,31,47,2,31,47,31,47,47,88,24,115,66,59,66,66,78,30,78,71,70,68,36,40,12,40,40,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/UBE4B_MOUSE_Starita_2013.fasta b/conf/data/proteingym_v1/struc_seq/128/UBE4B_MOUSE_Starita_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3992e2caf373facbebc8ae26e505525eba4077c1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/UBE4B_MOUSE_Starita_2013.fasta @@ -0,0 +1,2 @@ +>UBE4B_MOUSE_Starita_2013 +24,24,37,114,28,30,70,70,127,127,90,127,127,127,127,127,127,30,114,37,24,44,44,44,44,24,24,24,98,98,98,98,98,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,24,98,98,98,98,98,98,98,24,24,24,44,24,24,24,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,24,98,24,121,23,114,40,70,70,39,73,12,73,34,108,1,18,93,101,118,87,57,94,122,84,42,69,87,87,87,87,117,76,39,67,97,97,97,97,17,72,28,72,119,119,7,28,121,114,105,34,112,112,34,73,39,39,93,68,70,1,32,39,112,124,124,114,28,94,98,121,75,75,124,124,23,45,75,23,121,121,121,121,23,121,121,121,98,121,98,24,24,98,98,98,56,23,98,98,98,24,24,24,24,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,44,24,24,24,98,98,98,98,98,121,121,9,9,23,9,94,94,124,124,124,112,112,32,18,17,32,18,105,105,32,93,1,18,18,18,68,17,35,72,127,127,72,72,97,35,72,40,40,40,17,35,17,18,18,73,18,32,32,18,32,32,18,18,18,18,32,67,105,85,107,85,7,105,85,74,74,4,116,22,13,22,83,76,85,85,105,9,14,105,105,45,75,7,7,7,28,126,105,112,40,34,17,124,124,17,39,70,70,70,35,70,112,17,17,105,124,105,76,85,67,105,105,112,93,34,93,93,124,124,45,124,23,9,23,75,121,75,124,124,1,1,93,32,32,93,18,93,105,34,93,124,9,94,60,94,88,9,85,34,105,83,112,1,112,112,76,74,23,85,83,22,104,94,98,23,27,22,22,76,22,22,22,85,67,75,85,85,105,45,124,93,93,9,45,45,45,83,1,107,88,85,76,100,75,105,75,100,105,124,75,121,98,121,23,121,28,30,40,124,18,73,18,32,73,68,1,39,90,40,1,73,73,32,32,32,32,32,18,32,32,93,32,93,34,17,45,105,85,105,17,34,17,17,18,32,39,39,93,34,105,105,93,45,14,45,22,22,27,9,94,94,94,23,2,104,22,22,107,45,101,85,9,14,45,93,32,93,32,32,18,18,32,34,32,39,112,28,83,9,124,9,94,23,88,124,9,94,94,9,23,23,23,9,45,45,9,94,24,94,24,55,31,4,4,4,4,33,36,30,108,1,40,90,73,40,70,7,75,23,28,121,121,95,95,95,60,98,2,110,45,88,83,85,105,1,105,93,32,32,124,32,32,32,105,34,32,34,112,1,39,68,68,68,68,90,73,73,90,73,73,68,68,18,73,90,73,73,68,68,73,17,127,72,35,72,100,97,72,28,72,100,72,72,72,127,35,35,90,73,73,68,68,18,73,90,73,73,68,18,73,73,39,32,17,105,105,105,93,34,105,105,67,97,112,17,34,17,39,73,32,18,32,18,18,73,32,32,73,18,40,34,17,17,67,83,110,72,125,125,119,98,23,98,69,69,69,69,94,94,13,107,107,45,27,4,107,107,33,33,108,17,105,18,73,18,32,18,18,18,17,17,34,34,34,72,112,67,75,97,34,112,34,34,17,34,34,73,18,32,18,18,32,34,83,17,34,67,9,17,23,107,27,107,83,97,1,1,32,32,32,32,93,32,32,93,1,105,34,67,97,97,67,67,67,97,97,72,35,105,67,97,34,34,105,67,67,75,23,105,67,67,105,67,1,1,1,18,32,32,32,18,32,93,34,124,75,75,23,28,28,28,28,28,127,17,17,32,18,18,93,32,18,18,18,18,18,18,68,39,17,68,30,112,112,67,97,39,39,39,39,70,68,68,40,39,68,68,18,32,18,17,32,18,32,32,73,73,73,73,18,32,18,32,18,18,18,18,18,32,93,18,93,34,32,34,34,34,73,39,70,68,73,127,127,127,30,30,40,28,28,40,30,30,30,70,70,12,90,68,68,90,73,73,68,73,73,32,18,32,18,18,32,32,39,32,18,18,18,73,18,32,32,73,18,18,34,17,17,105,75,67,9,75,75,67,85,45,93,34,93,34,34,105,32,34,105,32,32,124,67,32,105,85,67,17,34,67,67,67,75,75,34,124,124,112,28,121,94,94,9,83,97,83,40,40,112,39,73,34,17,18,18,32,32,32,93,32,124,124,1,124,124,124,93,93,93,93,105,105,105,124,9,47,67,124,124,112,30,124,1,1,40,32,18,68,18,34,40,127,35,112,34,34,30,30,30,112,17,68,39,18,68,68,18,18,18,34,32,32,18,73,17,35,35,35,127,127,127,123,35,100,23,74,121,23,28,47,4,4,4,31,31,33,116,4,4,4,4,4,79,59,16,58,59,111,2,111,41,16,59,59,79,88,88,79,75,34,7,23,34,124,74,74,74,31,47,47,111,31,31,31,47,47,88,111,115,66,59,66,66,78,30,78,71,70,90,108,70,90,68,73,90,90,40,39,12,12,40,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta b/conf/data/proteingym_v1/struc_seq/128/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..af1e37ac4d3aed1d166f777da6e5b0f7293d08ae --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/UBR5_HUMAN_Tsuboyama_2023_1I2T.fasta @@ -0,0 +1,2 @@ +>UBR5_HUMAN_Tsuboyama_2023_1I2T +12,18,68,12,32,18,68,73,32,17,17,105,105,17,97,17,17,97,97,17,17,17,39,17,18,112,39,32,34,112,30,30,112,30,40,34,40,35,73,32,35,127,68,127,68,17,17,90,73,73,73,68,73,39,12,12,68,12 diff --git a/conf/data/proteingym_v1/struc_seq/128/VG08_BPP22_Tsuboyama_2023_2GP8.fasta b/conf/data/proteingym_v1/struc_seq/128/VG08_BPP22_Tsuboyama_2023_2GP8.fasta new file mode 100644 index 0000000000000000000000000000000000000000..61ce172e0ff9c2cf6af0a7eea4d795acc0deac29 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/VG08_BPP22_Tsuboyama_2023_2GP8.fasta @@ -0,0 +1,2 @@ +>VG08_BPP22_Tsuboyama_2023_2GP8 +30,12,12,12,12,40,90,90,68,73,68,68,73,73,68,73,73,35,35,35,35,35,35,127,35,35,127,35,35,35,68,73,73,90,73,73,68,12,39,112 diff --git a/conf/data/proteingym_v1/struc_seq/128/VILI_CHICK_Tsuboyama_2023_1YU5.fasta b/conf/data/proteingym_v1/struc_seq/128/VILI_CHICK_Tsuboyama_2023_1YU5.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e423b6d8c8d01fd5ed85960707a37680c39d0fd0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/VILI_CHICK_Tsuboyama_2023_1YU5.fasta @@ -0,0 +1,2 @@ +>VILI_CHICK_Tsuboyama_2023_1YU5 +26,122,122,104,104,95,27,74,94,13,22,27,13,2,37,98,13,94,47,98,60,104,121,94,75,75,22,27,13,104,88,88,71,7,76,36,7,7,14,34,72,126,70,7,114,114,36,28,28,40,40,40,30,40,40,126,70,17,108,108,72,14,14,14,83 diff --git a/conf/data/proteingym_v1/struc_seq/128/VKOR1_HUMAN_Chiasson_2020_abundance.fasta b/conf/data/proteingym_v1/struc_seq/128/VKOR1_HUMAN_Chiasson_2020_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d1c9d77bee16af4b97f892796fa9c4764b4b13e0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/VKOR1_HUMAN_Chiasson_2020_abundance.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_abundance +24,24,98,94,28,121,123,70,39,30,68,18,18,73,32,32,18,18,32,18,73,32,18,73,18,32,73,68,1,67,39,97,97,72,72,125,100,119,36,23,9,13,104,47,42,111,42,104,104,47,107,9,22,75,83,67,75,75,97,107,76,76,14,76,100,74,74,100,100,23,100,47,23,23,23,47,23,71,45,14,1,39,39,32,18,73,32,32,73,18,32,18,73,39,93,124,112,112,40,40,40,40,17,73,18,32,73,73,18,18,73,18,18,73,68,18,73,68,68,17,97,72,97,100,119,100,100,74,22,74,118,117,117,112,32,39,73,32,73,32,18,18,73,18,32,73,73,18,18,18,112,112,112,30,30,123,121,121,121,98,98,98,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/VKOR1_HUMAN_Chiasson_2020_activity.fasta b/conf/data/proteingym_v1/struc_seq/128/VKOR1_HUMAN_Chiasson_2020_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c5d65f9fe29dcb1729fb2b4d5661cfeaa4b66036 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/VKOR1_HUMAN_Chiasson_2020_activity.fasta @@ -0,0 +1,2 @@ +>VKOR1_HUMAN_Chiasson_2020_activity +24,24,98,94,28,121,123,70,39,30,68,18,18,73,32,32,18,18,32,18,73,32,18,73,18,32,73,68,1,67,39,97,97,72,72,125,100,119,36,23,9,13,104,47,42,111,42,104,104,47,107,9,22,75,83,67,75,75,97,107,76,76,14,76,100,74,74,100,100,23,100,47,23,23,23,47,23,71,45,14,1,39,39,32,18,73,32,32,73,18,32,18,73,39,93,124,112,112,40,40,40,40,17,73,18,32,73,73,18,18,73,18,18,73,68,18,73,68,68,17,97,72,97,100,119,100,100,74,22,74,118,117,117,112,32,39,73,32,73,32,18,18,73,18,32,73,73,18,18,18,112,112,112,30,30,123,121,121,121,98,98,98,24 diff --git a/conf/data/proteingym_v1/struc_seq/128/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta b/conf/data/proteingym_v1/struc_seq/128/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ab64b72d8d7c47d7ac8662b96ae1e0caed1d8583 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/VRPI_BPT7_Tsuboyama_2023_2WNM.fasta @@ -0,0 +1,2 @@ +>VRPI_BPT7_Tsuboyama_2023_2WNM +121,121,121,41,31,41,58,58,0,0,66,65,0,0,66,5,25,89,86,65,54,65,0,0,58,59,59,33,53,126,126,51,78,126,126,53,78,70,125,78,78,125,71,53,53,53,66,0,103,66,80,66,54,115,60,98 diff --git a/conf/data/proteingym_v1/struc_seq/128/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta b/conf/data/proteingym_v1/struc_seq/128/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e3222a9820e73dde7ff88997b8536902a35ff094 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/YAIA_ECOLI_Tsuboyama_2023_2KVT.fasta @@ -0,0 +1,2 @@ +>YAIA_ECOLI_Tsuboyama_2023_2KVT +44,89,99,66,51,54,65,38,65,86,86,21,21,89,24,21,21,21,103,54,10,66,80,29,16,115,115,95,31,111,115,58,115,66,115,66,51,10,51,51,126,110,53,78,68,78,78,30,70,51,53,110 diff --git a/conf/data/proteingym_v1/struc_seq/128/YAP1_HUMAN_Araya_2012.fasta b/conf/data/proteingym_v1/struc_seq/128/YAP1_HUMAN_Araya_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ae5af2f1037ab4cd0145cb59fdbb7a0c8166740b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/YAP1_HUMAN_Araya_2012.fasta @@ -0,0 +1,2 @@ +>YAP1_HUMAN_Araya_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/128/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta b/conf/data/proteingym_v1/struc_seq/128/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1d9953edc04365c5db0088c341c05cf2e688228f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/128/YNZC_BACSU_Tsuboyama_2023_2JVD.fasta @@ -0,0 +1,2 @@ +>YNZC_BACSU_Tsuboyama_2023_2JVD +37,36,114,114,30,39,39,90,73,73,68,68,39,73,70,35,97,35,35,125,97,97,97,30,30,97,39,90,73,73,68,68,73,39,12,36,36,36,114 diff --git a/conf/data/proteingym_v1/struc_seq/20/A0A140D2T1_ZIKV_Sourisseau_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/A0A140D2T1_ZIKV_Sourisseau_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..fa530261591d2c18026cf2a5cd2cd050d1743746 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A0A140D2T1_ZIKV_Sourisseau_2019.fasta @@ -0,0 +1,2 @@ +>A0A140D2T1_ZIKV_Sourisseau_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/A0A192B1T2_9HIV1_Haddox_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/A0A192B1T2_9HIV1_Haddox_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..07e0a9cc6b298f54a2a6db63a181f13e0f3f4b0d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A0A192B1T2_9HIV1_Haddox_2018.fasta @@ -0,0 +1,2 @@ +>A0A192B1T2_9HIV1_Haddox_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/20/A0A1I9GEU1_NEIME_Kennouche_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/A0A1I9GEU1_NEIME_Kennouche_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6318a30b72dd9796b00197cfd961958d806411bc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A0A1I9GEU1_NEIME_Kennouche_2019.fasta @@ -0,0 +1,2 @@ +>A0A1I9GEU1_NEIME_Kennouche_2019 +3,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,16,10,10,10,4,10,10,4,8,16,9,18,18,11,18,18,0,16,4,9,16,10,8,0,9,9,0,0,3,3,0,0,8,8,8,8,8,8,8,4,4,0,0,18,12,7,6,8,7,8,6,8,8,7,7,18,12,12,7,7,7,12,18,12,18,12,7,7,7,6,6,8,0,8,4,8,7,7,7,12,2,1,12,12,14,14,14,14,15,15,14,14,14,12,12,12,14,2,12,12,7,7,14,7,8,8,7,14,14,7,7,14,14,15,13,13,6,6,6,6,8,4,6,4,9,0,0,0,19,18,6,14,7,7,14,14,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/A0A247D711_LISMN_Stadelmann_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/A0A247D711_LISMN_Stadelmann_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..85f181b7c1c73f4cf24e70a04e4a2432ec1bd1a4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A0A247D711_LISMN_Stadelmann_2021.fasta @@ -0,0 +1,2 @@ +>A0A247D711_LISMN_Stadelmann_2021 +3,3,3,3,3,16,18,11,16,9,3,3,16,9,0,18,18,1,1,1,12,14,6,6,6,6,14,12,12,1,1,1,12,18,6,15,13,15,6,14,12,1,18,12,18,7,6,6,13,0,18,9,0,0,4,16,16,9,9,10,4,9,9,13,13,13,13,3,3,3,3,9,4,9,9,9,10,16,16,10,16,16,11,9,3,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/A0A2Z5U3Z0_9INFA_Doud_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/A0A2Z5U3Z0_9INFA_Doud_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c155c2e0f8655a53a35179642f9e7068495f1f1b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A0A2Z5U3Z0_9INFA_Doud_2016.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Doud_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/A0A2Z5U3Z0_9INFA_Wu_2014.fasta b/conf/data/proteingym_v1/struc_seq/20/A0A2Z5U3Z0_9INFA_Wu_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..422e71fb138d957940266433c768989fe5751cda --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A0A2Z5U3Z0_9INFA_Wu_2014.fasta @@ -0,0 +1,2 @@ +>A0A2Z5U3Z0_9INFA_Wu_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/20/A4D664_9INFA_Soh_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/A4D664_9INFA_Soh_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b99bcd501cce4388e246bef99ae2fe8361cd74ae --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A4D664_9INFA_Soh_2019.fasta @@ -0,0 +1,2 @@ +>A4D664_9INFA_Soh_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/A4GRB6_PSEAI_Chen_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/A4GRB6_PSEAI_Chen_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9944738fdc1701a3dfa31c9983009e639083ab74 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/A4GRB6_PSEAI_Chen_2020.fasta @@ -0,0 +1,2 @@ +>A4GRB6_PSEAI_Chen_2020 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@@ +>A4_HUMAN_Seuma_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/20/AACC1_PSEAI_Dandage_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/AACC1_PSEAI_Dandage_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b23a6ef2a5e4876f6ac28084924b31fed015e00b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/AACC1_PSEAI_Dandage_2018.fasta @@ -0,0 +1,2 @@ +>AACC1_PSEAI_Dandage_2018 +15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,13,13,13,6,15,6,14,18,1,1,18,0,9,9,9,16,16,0,9,9,4,18,4,9,4,8,9,0,0,0,11,3,9,0,9,9,9,0,13,0,13,13,16,16,9,9,9,4,0,0,0,8,6,18,12,12,1,1,12,12,14,14,6,6,18,18,7,18,18,1,1,1,12,2,12,7,14,6,6,15,19,19,2,2,2,2,2,1,14,12,18,18,8,8,13,0,0,3,3,3,18,0,11,3,18,11,11,11,0,3,11,11,0,3,11,0,17,17,5,5,2,5,2,15,13,13,13,3,3,3,11,13,3,11,3,3,3,3,3,15,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/ACE2_HUMAN_Chan_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/ACE2_HUMAN_Chan_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..3a12bd8d810521bf685e1941d8edf6ca6cb33533 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ACE2_HUMAN_Chan_2020.fasta @@ -0,0 +1,2 @@ +>ACE2_HUMAN_Chan_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/20/ADRB2_HUMAN_Jones_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/ADRB2_HUMAN_Jones_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0f95b5de8ac331f4f2197037af3717e663792c1e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ADRB2_HUMAN_Jones_2020.fasta @@ -0,0 +1,2 @@ +>ADRB2_HUMAN_Jones_2020 +15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,16,16,11,11,16,16,11,10,10,16,10,10,10,10,10,10,10,10,10,16,10,10,10,16,9,9,3,3,9,9,9,9,10,10,10,10,10,16,10,10,10,10,10,10,10,10,10,10,9,9,16,10,16,9,10,16,9,3,10,10,9,0,0,0,8,4,0,4,9,9,9,9,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,9,10,9,3,3,3,3,3,3,3,3,9,9,9,16,16,16,16,11,11,16,11,16,16,10,16,10,10,10,16,10,10,10,16,9,9,9,3,9,0,0,8,0,6,0,3,3,0,0,3,0,0,9,4,8,8,8,8,8,8,8,8,8,0,9,9,4,9,3,9,16,16,9,10,10,16,3,10,10,16,16,10,10,16,16,10,16,16,16,16,11,11,16,11,11,16,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,13,15,15,15,13,13,3,3,3,11,11,11,11,11,11,16,11,11,16,11,11,16,16,11,16,10,16,16,16,10,11,16,10,10,16,16,10,16,16,16,10,11,16,10,16,3,9,0,9,0,13,13,13,3,3,3,11,3,16,16,11,16,16,10,10,16,10,10,10,10,10,10,10,10,10,16,10,16,10,16,16,16,10,16,16,10,10,16,16,16,16,11,3,11,11,3,11,3,3,3,3,3,3,13,13,15,15,15,15,15,15,15,15,15,15,15,15,13,13,3,3,3,11,11,11,3,3,3,3,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/AICDA_HUMAN_Gajula_2014_3cycles.fasta b/conf/data/proteingym_v1/struc_seq/20/AICDA_HUMAN_Gajula_2014_3cycles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..619e97b6ddd1ed46a460a71b3e2627acf464cd36 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/AICDA_HUMAN_Gajula_2014_3cycles.fasta @@ -0,0 +1,2 @@ +>AICDA_HUMAN_Gajula_2014_3cycles +15,15,15,19,6,8,0,0,3,0,4,13,4,4,17,4,17,4,6,13,13,13,13,6,6,14,18,1,1,1,1,1,1,1,1,1,1,15,15,15,15,14,1,1,1,1,14,1,18,1,6,14,15,15,13,18,18,0,16,3,3,16,11,11,11,11,11,3,3,0,6,17,6,19,19,2,2,2,1,2,2,2,2,19,5,17,4,9,10,9,16,10,10,10,16,16,16,9,3,11,0,17,17,17,5,5,5,5,5,5,5,17,17,19,6,4,6,13,13,13,0,4,4,10,10,4,9,10,4,4,9,9,17,17,5,5,5,17,17,4,0,3,0,0,0,3,0,0,0,8,18,0,0,6,13,13,13,6,0,6,6,6,13,0,8,0,9,4,0,3,11,0,0,11,16,4,3,16,9,16,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta b/conf/data/proteingym_v1/struc_seq/20/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1c7ef8b52b2c1f577295881a1ad520c14cd71969 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/AMFR_HUMAN_Tsuboyama_2023_4G3O.fasta @@ -0,0 +1,2 @@ +>AMFR_HUMAN_Tsuboyama_2023_4G3O +11,16,16,11,11,16,16,11,16,16,16,11,16,16,11,3,3,3,3,3,3,16,16,9,10,16,10,16,16,10,11,11,16,16,16,16,11,16,3,3,16,9,3,11,3,3,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/AMIE_PSEAE_Wrenbeck_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/AMIE_PSEAE_Wrenbeck_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..13254025e968adceb01dbd9551c3630206b4a718 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/AMIE_PSEAE_Wrenbeck_2017.fasta @@ -0,0 +1,2 @@ +>AMIE_PSEAE_Wrenbeck_2017 +18,14,14,14,2,2,2,7,7,7,18,18,7,2,2,2,2,2,2,19,19,19,19,6,8,0,0,0,3,0,4,10,16,9,10,10,16,10,16,10,16,4,16,16,16,4,16,9,0,4,2,17,5,2,2,5,5,5,2,19,19,8,8,19,8,8,6,3,9,3,0,8,8,8,8,8,8,6,18,0,3,9,9,4,9,10,10,4,10,10,4,4,10,10,17,17,17,2,2,2,2,7,7,7,7,6,19,6,13,6,13,13,6,19,7,7,7,12,2,12,2,2,7,17,4,4,8,18,14,12,1,12,14,14,7,6,6,6,6,6,6,6,6,7,7,7,14,14,14,14,14,2,14,7,12,7,8,6,7,7,2,2,2,5,19,19,19,17,17,10,10,10,16,0,17,9,0,18,17,9,18,18,17,17,5,5,5,5,5,5,19,7,7,6,6,13,13,3,11,3,0,11,16,4,8,4,4,4,4,10,4,4,4,17,2,2,2,2,2,7,7,19,19,19,6,19,7,7,7,7,7,7,2,12,12,2,2,17,4,8,8,7,14,12,12,12,12,7,7,7,7,7,12,12,2,2,2,2,18,18,0,3,0,3,11,9,9,3,3,3,13,13,9,9,9,9,3,0,8,8,8,0,8,0,0,0,0,0,9,9,3,0,0,0,8,8,8,8,6,13,13,3,3,3,3,3,3,16,3,16,11,11,11,11,11,11,11,3,3,3,3,3,3,13,13,6,14,6,14,6,6,6,15,6,6,6,7,6,6,15,13,6,15,15,13,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/ANCSZ_Hobbs_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/ANCSZ_Hobbs_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a197be25ee514aaf5d155b12c095ba58d44c5892 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ANCSZ_Hobbs_2022.fasta @@ -0,0 +1,2 @@ +>ANCSZ_Hobbs_2022 +13,13,0,13,17,8,13,8,7,19,18,7,19,19,19,0,0,3,11,18,0,11,9,17,9,16,17,4,8,8,7,19,19,7,2,2,2,2,2,19,4,7,6,6,14,2,2,1,1,12,7,6,6,6,6,18,14,12,12,12,12,12,12,12,6,8,7,7,14,12,12,12,6,14,14,7,6,7,0,18,0,3,18,0,0,9,0,0,0,0,0,0,6,6,6,8,8,19,19,7,19,8,7,8,8,15,7,8,8,19,8,8,0,13,3,3,3,3,16,11,11,16,16,16,16,16,10,9,3,9,9,9,9,9,13,13,0,9,9,9,10,16,16,10,9,10,16,9,16,16,9,16,16,10,9,9,9,0,0,0,8,8,19,19,19,19,19,19,13,13,3,11,18,18,3,13,8,8,0,13,6,6,6,7,7,7,7,2,2,2,14,14,15,15,15,14,14,12,1,12,12,12,7,7,6,7,7,7,12,1,12,1,1,12,12,12,6,7,7,14,12,12,14,12,6,6,6,14,6,8,0,0,9,3,13,0,0,4,8,8,8,8,8,8,6,7,6,8,8,7,19,7,19,7,8,8,0,13,6,13,13,13,13,13,15,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,15,13,13,13,13,15,15,15,15,15,15,15,15,13,13,0,8,4,13,13,13,8,8,0,6,8,0,3,3,3,3,3,3,3,13,0,19,17,19,19,19,6,6,14,12,12,12,14,14,14,14,14,14,7,14,7,14,14,12,12,12,12,12,1,12,12,18,6,6,14,14,14,12,12,1,12,12,12,14,7,6,13,13,3,3,11,11,3,11,11,11,11,11,11,9,3,9,0,8,4,6,6,8,8,8,8,7,7,18,7,2,2,18,14,14,14,14,14,12,1,1,12,12,12,12,7,6,8,8,8,4,4,4,9,9,9,9,3,0,0,9,3,9,16,4,10,10,10,10,10,10,4,4,10,10,4,10,16,9,4,9,16,0,8,4,18,18,18,8,4,4,4,8,7,7,7,7,7,6,8,8,4,8,8,8,7,8,18,4,4,18,18,18,7,15,6,15,6,18,7,14,14,14,15,15,15,15,13,0,6,9,4,4,4,4,9,0,8,13,13,0,6,18,18,18,4,4,4,4,4,4,4,10,10,4,10,10,4,4,10,4,4,4,9,4,0,0,6,15,13,13,0,13,9,3,0,9,3,3,9,3,3,3,3,13,0,15,0,13,6,6,9,3,3,3,10,9,16,10,10,9,10,10,4,4,9,0,4,6,4,4,10,10,16,16,9,10,16,16,10,16,10,16,10,10,10,9,10,10,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta b/conf/data/proteingym_v1/struc_seq/20/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2447a8f3933b7798000144158b558e59a6d78cea --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ARGR_ECOLI_Tsuboyama_2023_1AOY.fasta @@ -0,0 +1,2 @@ +>ARGR_ECOLI_Tsuboyama_2023_1AOY +11,11,11,11,11,11,11,16,9,16,9,8,0,8,8,8,0,6,0,9,9,3,9,9,16,16,16,3,11,16,3,9,3,3,3,9,16,9,9,16,16,11,16,9,3,11,4,0,8,7,7,7,7,6,6,6,6,7,7,7,7,8,0,8,13,13,0,9,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta b/conf/data/proteingym_v1/struc_seq/20/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..238cbce0bdabc313a21a85e1d821c4d6a49a4ae4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/B2L11_HUMAN_Dutta_2010_binding-Mcl-1.fasta @@ -0,0 +1,2 @@ +>B2L11_HUMAN_Dutta_2010_binding-Mcl-1 +15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,3,3,3,3,3,3,3,3,3,3,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,3,13,13,13,13,13,13,13,13,3,3,3,11,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,13,13,13,3,3,3,11,11,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta b/conf/data/proteingym_v1/struc_seq/20/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9ccda0d5fc900b095ca6985941fa1293a2f5946c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BBC1_YEAST_Tsuboyama_2023_1TG0.fasta @@ -0,0 +1,2 @@ +>BBC1_YEAST_Tsuboyama_2023_1TG0 +15,14,14,12,1,12,12,7,7,7,7,14,14,15,15,15,6,14,14,14,14,14,7,7,7,7,12,12,12,12,12,12,14,14,14,6,18,14,14,12,12,1,14,14,14,6,6,6,15,14,14,12,14,12,12,14,12,7,12,12,12,1,1,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta b/conf/data/proteingym_v1/struc_seq/20/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta new file mode 100644 index 0000000000000000000000000000000000000000..da41aa1f9bc29fb3a095fe3cfd45db67d41d9d05 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BCHB_CHLTE_Tsuboyama_2023_2KRU.fasta @@ -0,0 +1,2 @@ +>BCHB_CHLTE_Tsuboyama_2023_2KRU +17,17,19,17,17,0,9,9,9,3,16,9,3,3,11,3,3,3,16,11,11,11,16,10,11,16,16,4,9,16,9,0,3,9,3,0,17,17,4,0,9,9,9,10,16,16,16,10,11,16,16,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Deng_2012.fasta b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Deng_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c9d81a28d6e55c83918ea0de807176e4f5a996a1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Deng_2012.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Deng_2012 +15,15,15,15,13,13,13,13,13,13,13,13,13,13,3,3,3,3,3,3,3,13,13,3,3,16,16,9,16,16,16,3,16,16,4,3,9,18,18,18,18,18,12,18,18,12,18,18,18,8,8,18,6,18,12,14,18,18,14,12,7,7,8,18,7,18,18,8,18,4,9,10,10,10,10,10,10,10,10,10,9,9,9,0,3,3,3,0,0,7,7,7,7,7,8,0,13,15,0,0,0,6,0,0,3,9,4,8,13,13,6,6,7,6,8,8,0,4,8,9,10,10,4,10,4,4,8,4,4,4,4,9,10,4,4,10,9,9,4,9,9,0,4,0,9,9,9,3,16,9,3,3,16,9,9,0,4,4,8,8,8,6,0,0,8,6,8,6,8,8,8,6,6,18,7,7,7,7,8,18,18,18,0,4,18,9,16,4,0,9,10,9,0,0,0,4,9,9,3,11,10,9,3,10,10,4,4,4,8,8,8,8,8,6,8,4,4,4,4,18,4,9,18,6,19,14,14,12,7,18,18,18,18,18,12,8,8,7,7,7,18,1,1,1,1,12,12,14,14,6,14,14,12,14,12,12,1,1,1,1,18,12,7,18,8,0,3,13,4,9,8,0,10,10,4,9,10,10,10,4,16,10,4,9,16,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Firnberg_2014.fasta b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Firnberg_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0635a913845bf6b4307238d12d282442cd11d232 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Firnberg_2014.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Firnberg_2014 +15,15,15,15,13,13,13,13,13,13,13,13,13,13,3,3,3,3,3,3,3,13,13,3,3,16,16,9,16,16,16,3,16,16,4,3,9,18,18,18,18,18,12,18,18,12,18,18,18,8,8,18,6,18,12,14,18,18,14,12,7,7,8,18,7,18,18,8,18,4,9,10,10,10,10,10,10,10,10,10,9,9,9,0,3,3,3,0,0,7,7,7,7,7,8,0,13,15,0,0,0,6,0,0,3,9,4,8,13,13,6,6,7,6,8,8,0,4,8,9,10,10,4,10,4,4,8,4,4,4,4,9,10,4,4,10,9,9,4,9,9,0,4,0,9,9,9,3,16,9,3,3,16,9,9,0,4,4,8,8,8,6,0,0,8,6,8,6,8,8,8,6,6,18,7,7,7,7,8,18,18,18,0,4,18,9,16,4,0,9,10,9,0,0,0,4,9,9,3,11,10,9,3,10,10,4,4,4,8,8,8,8,8,6,8,4,4,4,4,18,4,9,18,6,19,14,14,12,7,18,18,18,18,18,12,8,8,7,7,7,18,1,1,1,1,12,12,14,14,6,14,14,12,14,12,12,1,1,1,1,18,12,7,18,8,0,3,13,4,9,8,0,10,10,4,9,10,10,10,4,16,10,4,9,16,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Jacquier_2013.fasta b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Jacquier_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0b3352a28c3a14e17be67cac848a7810f8bcc33f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Jacquier_2013.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Jacquier_2013 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b/conf/data/proteingym_v1/struc_seq/20/BLAT_ECOLX_Stiffler_2015.fasta @@ -0,0 +1,2 @@ +>BLAT_ECOLX_Stiffler_2015 +15,15,15,15,13,13,13,13,13,13,13,13,13,13,3,3,3,3,3,3,3,13,13,3,3,16,16,9,16,16,16,3,16,16,4,3,9,18,18,18,18,18,12,18,18,12,18,18,18,8,8,18,6,18,12,14,18,18,14,12,7,7,8,18,7,18,18,8,18,4,9,10,10,10,10,10,10,10,10,10,9,9,9,0,3,3,3,0,0,7,7,7,7,7,8,0,13,15,0,0,0,6,0,0,3,9,4,8,13,13,6,6,7,6,8,8,0,4,8,9,10,10,4,10,4,4,8,4,4,4,4,9,10,4,4,10,9,9,4,9,9,0,4,0,9,9,9,3,16,9,3,3,16,9,9,0,4,4,8,8,8,6,0,0,8,6,8,6,8,8,8,6,6,18,7,7,7,7,8,18,18,18,0,4,18,9,16,4,0,9,10,9,0,0,0,4,9,9,3,11,10,9,3,10,10,4,4,4,8,8,8,8,8,6,8,4,4,4,4,18,4,9,18,6,19,14,14,12,7,18,18,18,18,18,12,8,8,7,7,7,18,1,1,1,1,12,12,14,14,6,14,14,12,14,12,12,1,1,1,1,18,12,7,18,8,0,3,13,4,9,8,0,10,10,4,9,10,10,10,4,16,10,4,9,16,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/BRCA1_HUMAN_Findlay_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/BRCA1_HUMAN_Findlay_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7635fc6a0226d6a7d4cc80b524014660943919a0 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BRCA1_HUMAN_Findlay_2018.fasta @@ -0,0 +1,2 @@ +>BRCA1_HUMAN_Findlay_2018 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diff --git a/conf/data/proteingym_v1/struc_seq/20/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/20/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..30307415af818ca2d00f299546cdd9bea6854c17 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/BRCA2_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>BRCA2_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/20/C6KNH7_9INFA_Lee_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/C6KNH7_9INFA_Lee_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..33a05ef6a572abe0080364a6e9956b1e0af66eb4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/C6KNH7_9INFA_Lee_2018.fasta @@ -0,0 +1,2 @@ +>C6KNH7_9INFA_Lee_2018 +11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,13,13,13,6,8,6,8,18,18,1,1,1,18,18,7,7,7,19,14,14,14,12,12,12,8,0,0,6,6,7,14,7,12,7,14,12,12,12,12,2,19,19,2,19,19,19,19,19,19,19,19,19,7,7,19,5,5,19,5,19,19,8,17,4,9,8,4,8,8,0,8,8,8,0,9,3,8,8,8,7,7,2,2,2,5,5,5,19,19,19,6,19,6,8,7,19,19,2,5,17,13,13,3,3,11,3,0,0,4,8,17,7,7,7,7,7,7,12,12,14,14,14,14,15,14,14,14,14,12,14,12,12,14,7,7,7,7,7,8,6,15,14,14,7,7,7,8,7,14,12,12,12,12,7,7,6,7,7,7,7,1,14,1,1,1,1,2,7,7,7,7,14,12,12,1,1,1,1,1,2,2,2,7,19,17,0,9,0,8,8,8,7,7,8,8,0,14,7,1,1,1,1,1,1,14,14,15,1,1,1,1,12,14,2,19,19,19,19,6,7,19,8,6,7,7,2,2,2,2,2,2,1,1,1,12,12,7,7,2,1,1,1,1,1,1,14,12,12,1,1,12,12,12,12,12,12,12,12,7,7,7,7,7,19,5,5,5,5,5,5,5,19,19,19,19,19,19,7,2,7,2,19,19,2,2,19,14,7,7,7,19,19,19,19,19,19,6,15,14,2,2,7,7,7,19,19,17,17,19,19,14,12,12,7,7,8,7,7,7,7,7,7,19,6,15,13,15,13,15,15,15,15,12,7,7,18,7,7,7,7,7,19,6,14,14,14,6,8,18,7,1,1,1,12,18,6,6,14,14,1,1,14,12,18,0,3,0,0,3,16,9,16,11,16,16,16,11,16,16,11,11,0,4,0,6,7,14,12,12,2,14,14,6,6,6,6,15,15,15,13,13,3,3,11,13,11,11,3,3,11,11,11,11,11,11,3,3,11,3,3,11,11,0,0,11,9,0,0,9,9,8,0,11,4,0,11,16,9,16,11,16,9,16,11,16,9,11,16,9,3,3,9,8,0,0,8,18,18,18,12,6,8,8,18,18,1,12,18,8,8,18,6,13,3,3,18,3,3,10,4,9,10,9,9,9,9,9,9,0,4,16,9,4,9,9,0,0,9,3,3,3,13,13,13,13,13,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,3,13,13,13,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/CALM1_HUMAN_Weile_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/CALM1_HUMAN_Weile_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..874171132ca286cb6c3ebec41490f4c69b9b28e6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CALM1_HUMAN_Weile_2017.fasta @@ -0,0 +1,2 @@ +>CALM1_HUMAN_Weile_2017 +11,3,13,0,3,3,3,11,3,11,11,11,11,11,11,11,9,3,16,3,0,0,0,0,13,18,8,0,4,9,9,9,9,9,9,9,9,3,3,3,3,3,3,3,0,9,16,9,16,9,16,16,9,3,16,3,9,0,13,13,13,18,0,0,0,9,9,9,9,16,3,16,16,16,11,11,11,11,11,11,16,11,16,11,11,16,16,11,11,9,9,16,9,0,9,13,0,13,18,8,0,4,9,9,9,9,9,9,16,9,3,3,3,3,3,0,0,0,9,16,9,9,9,16,16,4,9,9,9,9,9,13,0,13,8,8,0,0,9,9,9,9,10,3,9,10,16,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/CAPSD_AAV2S_Sinai_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/CAPSD_AAV2S_Sinai_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..33d3887b6d9f334a1610abae36a175d4b9023871 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CAPSD_AAV2S_Sinai_2021.fasta @@ -0,0 +1,2 @@ +>CAPSD_AAV2S_Sinai_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CAR11_HUMAN_Meitlis_2020_gof.fasta b/conf/data/proteingym_v1/struc_seq/20/CAR11_HUMAN_Meitlis_2020_gof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6dae65b4ebb34ef14413c38a4ccb68f3cb117124 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CAR11_HUMAN_Meitlis_2020_gof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_gof 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CAR11_HUMAN_Meitlis_2020_lof.fasta b/conf/data/proteingym_v1/struc_seq/20/CAR11_HUMAN_Meitlis_2020_lof.fasta new file mode 100644 index 0000000000000000000000000000000000000000..75305c60ee4797c84ee1436761b9123ce9871e0d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CAR11_HUMAN_Meitlis_2020_lof.fasta @@ -0,0 +1,2 @@ +>CAR11_HUMAN_Meitlis_2020_lof 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CAS9_STRP1_Spencer_2017_positive.fasta b/conf/data/proteingym_v1/struc_seq/20/CAS9_STRP1_Spencer_2017_positive.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7ec7ea3fc691484b3aefa1f9733ec52b9d5b082c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CAS9_STRP1_Spencer_2017_positive.fasta @@ -0,0 +1,2 @@ +>CAS9_STRP1_Spencer_2017_positive 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CASP3_HUMAN_Roychowdhury_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/CASP3_HUMAN_Roychowdhury_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0c46ecb0c72419b952a4916f53fd7508fc6ea7b1 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CASP3_HUMAN_Roychowdhury_2020.fasta @@ -0,0 +1,2 @@ +>CASP3_HUMAN_Roychowdhury_2020 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+1,2 @@ +>CASP7_HUMAN_Roychowdhury_2020 +14,7,12,2,2,19,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,13,6,6,19,7,8,19,19,8,8,8,8,19,5,5,5,5,5,5,5,19,19,19,7,19,19,0,6,15,7,6,6,7,8,8,8,17,9,4,17,11,16,10,17,16,16,17,0,9,9,17,17,5,5,5,5,5,5,19,17,17,8,0,3,4,10,16,9,10,10,16,4,9,4,4,4,17,8,8,17,17,5,5,5,5,5,5,5,19,2,2,2,19,2,19,19,7,7,19,19,18,7,18,18,18,3,4,9,17,4,9,4,4,0,0,4,4,4,4,8,8,17,17,5,5,5,5,5,5,5,2,19,19,19,19,19,7,14,7,14,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,6,6,6,8,19,19,5,5,5,2,2,7,7,7,19,19,7,2,2,12,18,18,8,8,8,4,8,18,8,4,10,16,10,10,10,10,10,16,3,9,4,0,8,0,0,0,0,3,9,9,3,16,10,4,9,9,8,8,8,8,7,7,14,14,6,13,13,13,0,7,14,7,7,7,7,7,18,12,2,14,2,19,19,19,19,18,18,8,8,8,8 diff --git a/conf/data/proteingym_v1/struc_seq/20/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta b/conf/data/proteingym_v1/struc_seq/20/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta new file mode 100644 index 0000000000000000000000000000000000000000..57dbaa625b56bca3fdfe098ed6077f99deec7102 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CATR_CHLRE_Tsuboyama_2023_2AMI.fasta @@ -0,0 +1,2 @@ +>CATR_CHLRE_Tsuboyama_2023_2AMI +13,0,3,3,11,3,3,11,11,16,16,11,11,9,9,16,9,0,9,13,13,13,8,8,0,8,9,9,9,9,9,3,9,9,3,3,3,3,3,3,3,13,9,16,9,16,9,16,16,9,3,16,3,9,0,13,0,18,8,8,0,0,9,9,3,9,9,3,3,16,9,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta b/conf/data/proteingym_v1/struc_seq/20/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c6cabcf95e43c57eeb663a7b7376a4dc322dfc79 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CBPA2_HUMAN_Tsuboyama_2023_1O6X.fasta @@ -0,0 +1,2 @@ +>CBPA2_HUMAN_Tsuboyama_2023_1O6X +15,14,14,14,1,1,1,1,12,18,7,8,0,3,0,0,3,16,16,3,11,11,3,11,11,3,3,0,13,18,1,1,1,12,14,7,6,7,7,7,7,12,12,1,1,1,18,18,18,0,0,0,11,11,11,3,11,16,9,3,11,16,0,0,18,1,1,1,1,1,14,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/CBS_HUMAN_Sun_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/CBS_HUMAN_Sun_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8d9450dc3b7baf91525d91f2d5d8fe275ecec783 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CBS_HUMAN_Sun_2020.fasta @@ -0,0 +1,2 @@ +>CBS_HUMAN_Sun_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta b/conf/data/proteingym_v1/struc_seq/20/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8609b63dadfaf2f95409b6ec03555985855df71c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CBX4_HUMAN_Tsuboyama_2023_2K28.fasta @@ -0,0 +1,2 @@ +>CBX4_HUMAN_Tsuboyama_2023_2K28 +15,14,14,7,7,7,14,12,12,12,12,15,15,6,12,12,12,12,12,14,14,14,15,6,13,6,15,15,14,14,12,12,12,18,6,13,0,3,3,11,3,0,3,11,3,0,11,11,11,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/CCDB_ECOLI_Adkar_2012.fasta b/conf/data/proteingym_v1/struc_seq/20/CCDB_ECOLI_Adkar_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..49957308ee48fd502b1eb25d7fdad1458af1d7d5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CCDB_ECOLI_Adkar_2012.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Adkar_2012 +7,7,7,12,12,12,12,12,7,14,15,15,14,14,14,12,12,12,12,18,14,6,15,15,15,15,18,15,18,14,14,12,12,12,12,12,12,12,12,6,13,13,13,13,15,13,13,8,4,4,8,8,18,12,14,14,15,15,6,12,12,12,18,12,8,0,14,12,1,12,12,18,18,7,14,12,12,12,12,12,7,7,6,0,3,3,11,11,9,4,16,9,9,4,10,9,9,3,3,9,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/CCDB_ECOLI_Tripathi_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/CCDB_ECOLI_Tripathi_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f6de27862b9a1134ab8993b1a2d4539deca3b00f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CCDB_ECOLI_Tripathi_2016.fasta @@ -0,0 +1,2 @@ +>CCDB_ECOLI_Tripathi_2016 +7,7,7,12,12,12,12,12,7,14,15,15,14,14,14,12,12,12,12,18,14,6,15,15,15,15,18,15,18,14,14,12,12,12,12,12,12,12,12,6,13,13,13,13,15,13,13,8,4,4,8,8,18,12,14,14,15,15,6,12,12,12,18,12,8,0,14,12,1,12,12,18,18,7,14,12,12,12,12,12,7,7,6,0,3,3,11,11,9,4,16,9,9,4,10,9,9,3,3,9,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/CCR5_HUMAN_Gill_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/CCR5_HUMAN_Gill_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..14de6f53637e697332923eb8df3f10838f7283df --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CCR5_HUMAN_Gill_2023.fasta @@ -0,0 +1,2 @@ +>CCR5_HUMAN_Gill_2023 +13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,0,9,10,3,16,16,10,9,10,10,9,16,16,16,16,16,10,10,16,16,10,10,10,10,10,10,16,10,10,16,16,10,10,16,16,10,9,9,16,9,9,9,9,4,10,10,10,10,10,10,16,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,10,10,4,4,4,9,4,8,18,8,8,18,18,0,0,18,4,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,16,10,16,10,10,10,10,16,10,16,9,3,3,3,3,3,3,9,9,9,9,9,16,16,16,11,16,10,11,11,16,10,16,16,16,10,16,10,16,10,9,4,9,8,8,18,18,12,12,14,14,15,19,19,14,14,18,12,7,14,0,3,13,3,3,3,3,3,3,3,16,16,16,16,16,16,10,16,16,10,10,16,11,16,10,16,16,16,16,11,16,16,16,16,16,10,16,11,9,9,11,3,3,3,3,3,3,3,9,3,3,16,16,11,16,10,11,16,16,16,11,16,10,16,16,16,10,10,10,10,10,16,16,10,16,16,16,16,16,16,3,3,3,3,16,9,9,9,10,16,10,10,16,16,16,16,10,16,16,16,16,10,10,16,16,10,10,10,10,10,10,10,10,10,16,16,16,9,16,16,16,16,16,16,11,16,16,11,16,16,11,11,11,11,11,11,3,3,3,3,3,3,11,3,3,3,13,13,13,13,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta b/conf/data/proteingym_v1/struc_seq/20/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta new file mode 100644 index 0000000000000000000000000000000000000000..254482fb3fbfba9f1567b958a4e3d6e394f9188b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CD19_HUMAN_Klesmith_2019_FMC_singles.fasta @@ -0,0 +1,2 @@ +>CD19_HUMAN_Klesmith_2019_FMC_singles 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CP2C9_HUMAN_Amorosi_2021_abundance.fasta b/conf/data/proteingym_v1/struc_seq/20/CP2C9_HUMAN_Amorosi_2021_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..43ae1e6a1669aa7a862cce3857a47297be1a1392 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CP2C9_HUMAN_Amorosi_2021_abundance.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_abundance +3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,11,11,13,13,13,6,6,12,7,7,7,7,18,18,8,8,7,8,8,7,8,13,6,9,9,4,4,4,4,4,3,3,0,9,3,0,0,3,0,6,8,8,7,7,2,7,7,18,7,7,7,2,2,2,2,18,18,4,9,0,0,8,4,9,4,0,0,9,4,0,0,8,8,8,7,7,7,18,0,9,10,0,0,9,16,4,0,8,4,0,0,8,6,8,6,13,3,8,0,9,9,9,9,16,16,16,16,16,16,9,9,3,0,9,10,9,9,3,3,16,10,11,16,10,10,10,10,10,10,16,16,10,11,16,4,0,11,0,0,18,18,7,18,18,18,4,10,10,10,10,10,10,10,10,4,10,10,4,4,4,10,4,0,8,4,0,0,4,13,3,3,3,3,16,11,16,16,16,16,16,16,16,16,4,4,9,4,4,9,9,16,10,10,16,16,10,9,9,3,3,3,9,3,13,3,3,3,9,9,3,16,10,16,16,16,10,16,16,10,16,16,16,10,16,16,16,10,16,11,9,16,3,3,9,13,0,15,6,0,8,0,10,10,9,9,10,10,16,16,3,9,16,3,3,3,3,13,13,13,9,9,9,16,4,4,10,10,4,4,10,16,9,10,10,10,10,10,10,10,4,10,10,4,10,10,9,9,16,16,4,10,10,9,9,9,9,11,16,16,16,11,16,9,9,9,10,9,9,9,8,0,6,6,15,4,4,9,9,3,9,9,9,9,9,4,4,10,4,4,10,10,10,10,10,10,10,10,4,10,4,8,8,7,7,7,2,7,7,7,7,7,7,7,7,6,6,7,14,14,7,7,7,7,7,2,2,2,18,8,4,4,4,4,4,4,9,3,9,4,4,0,13,4,13,8,9,4,10,8,4,8,8,8,6,6,8,8,0,8,6,8,6,4,4,4,4,0,8,8,0,13,8,8,0,9,10,9,9,10,16,10,10,10,10,16,10,10,10,4,4,4,4,4,8,18,18,18,18,18,12,6,6,4,13,13,8,6,6,7,7,7,8,8,4,8,8,8,8,8,7,7,18,12,18,18,18,18,18,12 diff --git a/conf/data/proteingym_v1/struc_seq/20/CP2C9_HUMAN_Amorosi_2021_activity.fasta b/conf/data/proteingym_v1/struc_seq/20/CP2C9_HUMAN_Amorosi_2021_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5e044ce68e6fe92705a428719c0af2a25582a115 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CP2C9_HUMAN_Amorosi_2021_activity.fasta @@ -0,0 +1,2 @@ +>CP2C9_HUMAN_Amorosi_2021_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/20/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta b/conf/data/proteingym_v1/struc_seq/20/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..53d14af633acbdc95d3584917105867842fe3e8c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CSN4_MOUSE_Tsuboyama_2023_1UFM.fasta @@ -0,0 +1,2 @@ +>CSN4_MOUSE_Tsuboyama_2023_1UFM +13,13,13,13,3,3,3,11,3,16,11,11,16,16,11,16,16,16,11,9,18,0,3,6,7,18,18,4,9,4,9,9,9,9,10,16,9,9,16,9,9,16,16,9,11,11,9,3,11,3,0,3,3,3,3,0,6,7,18,18,18,8,6,6,8,18,18,12,18,7,14,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta b/conf/data/proteingym_v1/struc_seq/20/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1e308272f16dc54d5ea92d90c5ea94c3af63f6c3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/CUE1_YEAST_Tsuboyama_2023_2MYX.fasta @@ -0,0 +1,2 @@ +>CUE1_YEAST_Tsuboyama_2023_2MYX +6,0,6,8,4,0,9,16,9,16,10,16,10,9,11,16,9,3,3,0,4,9,4,0,4,4,4,4,4,0,0,9,4,9,10,16,16,9,16,11,3,9,16,3,3,3,6,8,6,0,0,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/D7PM05_CLYGR_Somermeyer_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/D7PM05_CLYGR_Somermeyer_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d87b663b535d833a3fa8bf6b2a6eb3b9d6c1a7a3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/D7PM05_CLYGR_Somermeyer_2022.fasta @@ -0,0 +1,2 @@ +>D7PM05_CLYGR_Somermeyer_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/20/DLG4_RAT_McLaughlin_2012.fasta b/conf/data/proteingym_v1/struc_seq/20/DLG4_RAT_McLaughlin_2012.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d2c65cd1eb0975b5ebd156e17ceb3efe3d5f991e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/DLG4_RAT_McLaughlin_2012.fasta @@ -0,0 +1,2 @@ +>DLG4_RAT_McLaughlin_2012 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diff --git a/conf/data/proteingym_v1/struc_seq/20/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta b/conf/data/proteingym_v1/struc_seq/20/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1cf5e18ac28cd578fa47279819a38671c196cb39 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/DN7A_SACS2_Tsuboyama_2023_1JIC.fasta @@ -0,0 +1,2 @@ +>DN7A_SACS2_Tsuboyama_2023_1JIC +15,14,14,14,14,14,15,15,15,14,14,14,14,15,14,6,14,14,12,12,1,14,12,12,6,6,14,14,1,1,12,14,14,14,15,15,15,15,14,12,12,14,1,14,14,18,6,6,18,6,3,13,18,13,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta b/conf/data/proteingym_v1/struc_seq/20/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..55a3ba0205982a34736b3539c4a82bcdf9d8364f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/DNJA1_HUMAN_Tsuboyama_2023_2LO1.fasta @@ -0,0 +1,2 @@ +>DNJA1_HUMAN_Tsuboyama_2023_2LO1 +13,9,9,4,0,10,10,4,9,0,0,6,0,3,9,3,9,9,16,16,10,16,16,16,10,16,3,16,3,3,3,3,3,3,3,3,3,3,11,16,16,11,16,10,10,16,10,10,10,16,10,9,9,16,11,11,16,11,3,3,9,11,3,3,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta b/conf/data/proteingym_v1/struc_seq/20/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta new file mode 100644 index 0000000000000000000000000000000000000000..95a0e75c40f1b39b3ae91fd9675dc73ce6ff1f74 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/DOCK1_MOUSE_Tsuboyama_2023_2M0Y.fasta @@ -0,0 +1,2 @@ +>DOCK1_MOUSE_Tsuboyama_2023_2M0Y +14,14,14,14,14,6,6,7,7,12,12,12,7,7,7,7,7,14,14,15,6,6,14,14,14,14,7,7,7,7,7,12,12,12,12,12,12,12,14,14,6,14,12,12,12,12,14,18,6,6,6,13,6,14,14,12,12,14,12,6,7,12,12,12,12,6 diff --git a/conf/data/proteingym_v1/struc_seq/20/DYR_ECOLI_Nguyen_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/DYR_ECOLI_Nguyen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7b8babbaca92880ef449aa977d62c9cdacaed3fb --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/DYR_ECOLI_Nguyen_2023.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Nguyen_2023 +19,5,5,5,5,5,2,2,2,19,14,7,7,7,7,14,6,8,6,14,14,7,6,18,3,3,0,11,11,11,0,3,11,0,17,17,17,5,19,5,5,5,17,17,17,17,19,9,9,13,3,13,6,19,6,19,5,5,5,5,5,19,19,19,15,15,15,15,15,15,19,19,5,19,19,6,0,0,3,0,5,17,3,17,19,13,13,19,19,5,5,5,5,5,17,17,19,6,17,19,13,3,0,17,0,6,19,2,2,2,2,2,2,2,2,2,14,19,14,6,6,7,7,7,7,0,6,13,13,14,15,14,12,1,1,1,1,1,1,1,12,14,7,7,6,6,7,7,7,12,2,1,1,1,1,1,2,12,12 diff --git a/conf/data/proteingym_v1/struc_seq/20/DYR_ECOLI_Thompson_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/DYR_ECOLI_Thompson_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e4c4d57807a82aeef46e4c5c80d3a645d7ebaa93 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/DYR_ECOLI_Thompson_2019.fasta @@ -0,0 +1,2 @@ +>DYR_ECOLI_Thompson_2019 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a/conf/data/proteingym_v1/struc_seq/20/ENV_HV1B9_DuenasDecamp_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/ENV_HV1B9_DuenasDecamp_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..253653eba8261d910703ac497ca62d6a15b0994a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ENV_HV1B9_DuenasDecamp_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1B9_DuenasDecamp_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/ENV_HV1BR_Haddox_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/ENV_HV1BR_Haddox_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a003778edb35198ab09802d1d891a70a18cc746c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ENV_HV1BR_Haddox_2016.fasta @@ -0,0 +1,2 @@ +>ENV_HV1BR_Haddox_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta b/conf/data/proteingym_v1/struc_seq/20/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8a4b664a042a6e11a771012c6ea09fd7b4479ea2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/EPHB2_HUMAN_Tsuboyama_2023_1F0M.fasta @@ -0,0 +1,2 @@ +>EPHB2_HUMAN_Tsuboyama_2023_1F0M +13,13,13,13,9,9,0,9,9,16,9,16,16,16,16,9,9,16,9,9,9,9,16,16,9,9,3,3,9,3,13,9,9,9,9,9,9,3,3,10,3,9,9,9,16,3,3,3,3,9,3,16,11,10,16,11,16,16,11,11,16,16,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/ERBB2_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/ERBB2_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..97cee44826bb769c872b774c3231cd12e0cb68ae --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ERBB2_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>ERBB2_HUMAN_Elazar_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/ESTA_BACSU_Nutschel_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/ESTA_BACSU_Nutschel_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f8aa3a92d60659b88eac9bd616ba172bfdc30e4c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ESTA_BACSU_Nutschel_2020.fasta @@ -0,0 +1,2 @@ +>ESTA_BACSU_Nutschel_2020 +11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,13,13,13,13,6,19,19,17,5,5,5,5,17,17,8,8,8,6,14,0,17,17,9,10,10,9,16,16,9,3,3,3,3,0,0,0,6,17,17,5,5,18,18,8,8,8,8,8,4,4,10,10,9,4,9,16,9,4,16,11,3,17,3,11,17,0,11,16,9,3,0,8,17,5,5,5,5,5,17,17,17,17,17,4,4,17,4,9,9,4,4,9,9,9,4,8,8,17,5,5,5,5,5,5,17,17,17,17,4,4,4,9,8,8,8,7,7,7,8,8,8,6,13,6,7,2,2,2,5,5,5,5,17,19,19,17,6,17,17,0,8,8,8,17,17,19,7,2,2,2,2,5,5,19,5,5,17,17,17,4,4,17,4,10,9,10,0,4,16,11,9,17,16,16,17,17,4,17,17,17,2,7,7,7 diff --git a/conf/data/proteingym_v1/struc_seq/20/F7YBW7_MESOW_Ding_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/F7YBW7_MESOW_Ding_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4f9d802f305876085d1d8776239ada788fe2994b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/F7YBW7_MESOW_Ding_2023.fasta @@ -0,0 +1,2 @@ +>F7YBW7_MESOW_Ding_2023 +15,15,15,15,15,15,15,15,15,15,13,3,3,11,3,3,11,11,11,11,16,16,16,3,3,3,3,3,3,3,16,3,11,16,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,3,13,13,15,15,15,13,13,3,11,11,11,11,11,11,11,11,11,11,11,3,3,13,13,13,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/F7YBW8_MESOW_Aakre_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/F7YBW8_MESOW_Aakre_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8801bb22f6fc323eb8c6e62825673bae9be49549 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/F7YBW8_MESOW_Aakre_2015.fasta @@ -0,0 +1,2 @@ +>F7YBW8_MESOW_Aakre_2015 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b/conf/data/proteingym_v1/struc_seq/20/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0fe565c299348b5ed59ed628028b99d17335b75c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/FKBP3_HUMAN_Tsuboyama_2023_2KFV.fasta @@ -0,0 +1,2 @@ +>FKBP3_HUMAN_Tsuboyama_2023_2KFV +15,6,15,13,13,4,9,9,13,13,9,9,13,13,13,9,9,10,9,16,10,10,16,3,10,0,0,18,4,0,0,0,9,9,3,16,16,9,9,9,9,9,9,9,3,9,10,9,3,10,3,4,10,3,10,16,16,10,10,16,16,9,0,11,3,0,0,0,18 diff --git a/conf/data/proteingym_v1/struc_seq/20/GAL4_YEAST_Kitzman_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/GAL4_YEAST_Kitzman_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..624575603839bd814a9e02c25b8ec619c662e4d7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/GAL4_YEAST_Kitzman_2015.fasta @@ -0,0 +1,2 @@ +>GAL4_YEAST_Kitzman_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/20/GCN4_YEAST_Staller_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/GCN4_YEAST_Staller_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..d0c372c021d51bd686ae5ac39ac048bdb1c71830 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/GCN4_YEAST_Staller_2018.fasta @@ -0,0 +1,2 @@ +>GCN4_YEAST_Staller_2018 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0000000000000000000000000000000000000000..bc4140f9e149a4af501fa583a84b565348151467 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/GDIA_HUMAN_Silverstein_2021.fasta @@ -0,0 +1,2 @@ +>GDIA_HUMAN_Silverstein_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/20/GFP_AEQVI_Sarkisyan_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/GFP_AEQVI_Sarkisyan_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1bf1705fa1599b50d014c142a3f3d282eccb005a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/GFP_AEQVI_Sarkisyan_2016.fasta @@ -0,0 +1,2 @@ +>GFP_AEQVI_Sarkisyan_2016 +9,8,0,4,4,0,0,4,0,6,7,2,12,1,1,1,1,1,2,1,2,2,19,19,19,2,14,1,1,1,1,1,1,12,2,7,17,19,19,19,2,12,1,1,1,1,1,12,12,14,14,14,14,6,0,0,18,18,18,3,3,3,18,18,18,0,18,18,4,8,17,17,8,17,6,13,13,6,8,8,7,8,8,8,8,8,8,8,8,6,7,18,1,1,1,1,1,1,1,1,1,14,14,18,1,1,1,1,1,1,1,2,12,2,2,15,19,19,2,2,2,2,1,2,1,2,1,2,12,18,8,0,3,0,18,18,8,8,8,18,18,7,12,14,14,14,1,1,1,1,1,1,1,12,12,6,13,14,7,12,12,1,1,1,1,1,1,12,12,12,7,7,7,6,12,12,12,1,1,1,1,1,1,1,1,12,7,14,6,6,6,6,8,8,7,7,7,12,1,1,1,1,1,1,1,1,1,1,14,15,15,15,15,6,6,14,14,1,1,1,1,1,1,1,2,1,1,14,6,13,13,3,3,3,3,3,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/GLPA_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/GLPA_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1fcec977e36b3b3054ab9a245f9b865b5a98c9a9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/GLPA_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>GLPA_HUMAN_Elazar_2016 +11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,13,13,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,13,13,13,13,13,13,13,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/GRB2_HUMAN_Faure_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/GRB2_HUMAN_Faure_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..efe5b69be4cb3448bd1391052ec654ebbd1998ae --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/GRB2_HUMAN_Faure_2021.fasta @@ -0,0 +1,2 @@ +>GRB2_HUMAN_Faure_2021 +14,12,12,12,12,7,7,7,7,14,14,15,6,6,14,14,14,14,7,7,7,7,12,12,12,12,12,12,14,14,15,14,14,6,12,14,7,12,12,12,14,15,6,15,14,12,12,12,14,12,7,7,12,12,14,1,15,6,19,2,2,19,2,19,19,13,0,3,11,18,18,3,0,18,18,8,6,6,6,7,7,7,2,2,2,2,14,14,6,6,6,6,6,14,12,12,12,1,12,7,7,15,6,7,18,12,1,12,12,12,12,12,14,6,6,7,7,7,14,14,14,15,14,14,18,7,18,18,13,3,0,0,9,0,0,0,0,8,6,8,6,6,6,15,6,7,8,8,7,8,7,6,8,13,13,13,13,15,12,12,12,12,12,7,7,7,7,14,14,15,15,14,14,14,14,14,7,7,7,7,12,12,12,12,12,12,14,14,15,6,6,18,7,7,12,12,14,14,14,15,14,14,12,12,12,12,12,7,12,12,12,12,12,14,6,15,13 diff --git a/conf/data/proteingym_v1/struc_seq/20/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta b/conf/data/proteingym_v1/struc_seq/20/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta new file mode 100644 index 0000000000000000000000000000000000000000..186497c29a2d7b9e80ac01ac017234895f3719ff --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HCP_LAMBD_Tsuboyama_2023_2L6Q.fasta @@ -0,0 +1,2 @@ +>HCP_LAMBD_Tsuboyama_2023_2L6Q +3,3,16,0,4,9,9,4,4,10,11,4,4,16,0,0,9,3,9,0,18,8,18,12,18,8,18,6,6,14,7,14,12,18,8,4,9,9,9,16,11,16,16,11,16,16,16,11,16,16,11,16,16,16,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta b/conf/data/proteingym_v1/struc_seq/20/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4a8ba2506213e38b243620112c071c15fc450328 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HECD1_HUMAN_Tsuboyama_2023_3DKM.fasta @@ -0,0 +1,2 @@ +>HECD1_HUMAN_Tsuboyama_2023_3DKM +11,11,9,11,11,0,0,3,0,18,7,7,7,7,12,12,1,14,14,14,14,14,6,13,6,6,6,7,6,0,8,8,7,12,12,12,12,12,12,7,7,7,6,7,14,7,12,12,12,12,12,7,7,7,12,12,12,12,7,18,6,6,6,6,7,7,14,12,18,12,1,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/HEM3_HUMAN_Loggerenberg_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/HEM3_HUMAN_Loggerenberg_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7e85d21eb68354e237581874a2dea83ede50c42e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HEM3_HUMAN_Loggerenberg_2023.fasta @@ -0,0 +1,2 @@ +>HEM3_HUMAN_Loggerenberg_2023 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b/conf/data/proteingym_v1/struc_seq/20/HIS7_YEAST_Pokusaeva_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bedfeb9ee6906eca922523af6141ce55a29b77bf --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HIS7_YEAST_Pokusaeva_2019.fasta @@ -0,0 +1,2 @@ +>HIS7_YEAST_Pokusaeva_2019 +13,6,8,8,18,18,1,18,12,12,12,14,14,6,18,14,1,12,1,1,2,2,8,8,19,19,19,2,14,14,15,15,15,15,15,15,15,15,15,15,15,6,6,0,14,14,14,19,7,19,19,2,2,2,17,8,4,4,4,0,4,9,0,4,10,4,4,10,10,17,17,10,10,4,17,2,2,2,2,2,18,18,0,0,0,13,13,13,4,4,0,4,4,10,4,4,10,10,4,4,10,4,18,4,4,4,8,8,8,6,8,7,8,8,8,8,18,18,18,18,18,18,18,8,7,7,18,12,18,18,18,1,18,18,8,7,8,17,17,17,17,5,17,5,17,6,0,13,6,6,0,8,8,0,0,8,0,0,10,10,4,10,10,4,17,10,4,4,4,10,4,17,17,2,2,2,2,2,2,1,12,18,6,6,0,4,18,18,4,4,8,18,4,4,18,18,4,4,18,18,4,8,18,8,8,8,8,6,7,7,7,6,8,8,13,13,15,8,6,8 diff --git a/conf/data/proteingym_v1/struc_seq/20/HMDH_HUMAN_Jiang_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/HMDH_HUMAN_Jiang_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..5afa21903b20c905fc015ccaea79eb4faf95517e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HMDH_HUMAN_Jiang_2019.fasta @@ -0,0 +1,2 @@ +>HMDH_HUMAN_Jiang_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta b/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0008e57f2abbff30632a0a4671ff152570751d40 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Cote-Hammarlof_2020_growth-H2O2 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diff --git a/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Flynn_2019.fasta b/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Flynn_2019.fasta new file mode 100644 index 0000000000000000000000000000000000000000..85b414f89e0b3f3f0bb63ccfce69fa1a5371f9b4 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Flynn_2019.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Flynn_2019 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diff --git a/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Mishra_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Mishra_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6e89b82f4a96165986b4076d2c50143243f0803a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HSP82_YEAST_Mishra_2016.fasta @@ -0,0 +1,2 @@ +>HSP82_YEAST_Mishra_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/HXK4_HUMAN_Gersing_2022_activity.fasta b/conf/data/proteingym_v1/struc_seq/20/HXK4_HUMAN_Gersing_2022_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..52abaaa6dad063443d4643748712106f579b4d33 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HXK4_HUMAN_Gersing_2022_activity.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2022_activity 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diff --git a/conf/data/proteingym_v1/struc_seq/20/HXK4_HUMAN_Gersing_2023_abundance.fasta b/conf/data/proteingym_v1/struc_seq/20/HXK4_HUMAN_Gersing_2023_abundance.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b5abd22ca99de28453dee4143c5835ca16594e74 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/HXK4_HUMAN_Gersing_2023_abundance.fasta @@ -0,0 +1,2 @@ +>HXK4_HUMAN_Gersing_2023_abundance +11,11,11,11,11,11,11,11,16,11,11,16,16,11,16,16,16,11,16,10,16,4,10,4,10,9,10,3,10,10,10,16,10,10,10,10,10,16,16,10,10,4,9,4,4,4,9,9,9,9,0,4,9,4,9,4,8,8,8,7,7,18,18,18,4,9,0,7,8,0,18,7,12,2,2,2,2,2,19,19,6,7,14,12,1,1,1,1,1,12,12,12,14,14,6,6,6,6,14,14,12,12,1,1,1,14,1,18,14,0,0,8,8,0,8,8,8,0,4,10,4,4,10,10,16,10,16,16,3,0,9,11,0,3,16,3,3,3,0,0,17,19,5,5,5,5,17,17,17,19,19,19,7,7,7,7,7,7,8,8,7,7,7,7,7,7,6,6,6,8,19,8,8,8,17,8,6,7,18,18,8,0,0,10,10,9,16,16,9,9,16,9,3,9,17,17,19,5,5,17,17,17,17,19,17,18,18,4,17,4,4,4,17,4,4,9,0,0,17,17,8,18,18,2,17,17,17,8,8,8,18,18,18,12,12,18,18,18,6,8,8,0,0,0,13,13,6,6,7,7,7,12,18,12,18,8,4,4,4,4,10,4,4,9,9,9,3,13,4,9,9,9,16,10,4,9,10,9,0,0,0,6,13,0,4,4,4,4,4,4,4,4,4,4,4,4,4,4,9,4,10,10,10,10,16,10,9,10,10,9,9,10,10,10,4,8,8,9,4,4,0,0,0,9,9,4,4,4,4,9,9,4,4,10,10,4,10,10,10,4,9,3,9,9,9,16,16,10,9,9,16,10,3,9,9,0,0,0,9,0,9,9,9,9,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,4,16,16,0,0,3,3,0,3,17,17,17,17,5,5,5,2,17,5,17,17,17,4,17,13,0,9,9,10,10,9,9,10,10,10,10,10,10,9,10,10,4,4,17,17,5,5,5,5,5,17,17,17,4,4,17,18,18,4,17,17,4,4,17,4,4,4,9,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/I6TAH8_I68A0_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/I6TAH8_I68A0_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..320a5d86896a99a065e6717582c9f03b28058270 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/I6TAH8_I68A0_Doud_2015.fasta @@ -0,0 +1,2 @@ +>I6TAH8_I68A0_Doud_2015 +15,15,15,15,15,15,15,13,13,13,13,13,13,15,15,15,15,15,15,13,3,8,0,4,8,9,4,10,10,9,10,10,10,10,10,10,10,10,10,10,10,16,10,10,3,11,9,3,0,13,3,18,8,4,4,18,4,4,4,10,9,0,10,10,9,4,10,10,9,4,10,16,11,11,11,9,16,16,3,3,3,3,3,13,15,15,13,6,0,4,18,18,18,12,14,18,7,7,14,14,15,15,6,14,12,14,12,12,12,12,18,18,4,9,9,9,16,11,16,10,10,10,10,10,10,3,9,3,10,10,16,16,10,16,9,10,10,4,10,10,10,4,4,4,4,4,8,8,0,9,0,0,4,4,3,9,10,10,10,9,4,4,4,4,4,4,4,4,4,4,4,4,9,13,3,9,9,16,9,9,4,4,4,4,4,4,10,10,10,10,10,10,10,9,16,10,9,9,16,9,9,3,3,3,0,9,9,9,9,9,9,3,3,3,9,16,11,16,16,16,16,10,10,16,16,10,10,4,8,4,8,8,9,16,10,10,16,10,10,16,16,10,10,9,3,4,4,10,9,9,0,9,10,9,10,10,16,10,10,10,10,10,4,4,8,4,8,8,7,7,7,7,8,4,4,10,10,10,4,4,10,10,4,10,9,9,3,3,9,9,4,9,4,4,4,9,8,8,7,8,8,0,0,8,0,4,4,0,4,4,4,8,18,17,18,14,14,14,6,6,6,8,4,4,8,0,4,4,4,4,10,4,4,4,4,4,4,8,8,8,8,8,18,8,8,8,7,8,8,8,0,4,8,8,8,6,6,8,0,0,7,8,8,8,14,15,15,15,6,15,12,14,7,12,12,2,2,2,17,8,4,8,8,7,7,8,7,7,7,7,7,7,7,7,14,7,7,7,19,6,6,6,8,6,8,8,8,8,8,7,7,7,7,7,7,7,14,7,7,7,6,8,0,0,4,9,11,16,9,3,3,13,13,13,13,3,13,3,16,11,10,11,11,10,16,11,4,4,8,18,7,7,14,14,7,14,7,7,7,7,7,7,7,7,7,18,0,8,0,0,6,6,6,7,7,14,6,15,15,15,6,13,6,13,7,8,7,8,8,8,8,6,19,6,6,0,13,6 diff --git a/conf/data/proteingym_v1/struc_seq/20/IF1_ECOLI_Kelsic_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/IF1_ECOLI_Kelsic_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..70a7b6937fd9a1f53b60a7bcd236076e1426cddc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/IF1_ECOLI_Kelsic_2016.fasta @@ -0,0 +1,2 @@ +>IF1_ECOLI_Kelsic_2016 +13,13,13,13,6,7,7,12,12,12,12,12,12,12,12,14,14,15,15,6,2,2,12,12,12,12,12,14,14,7,7,12,12,2,2,19,19,0,13,13,3,3,3,3,13,13,14,14,14,14,12,12,12,1,12,12,2,7,6,6,6,19,19,2,2,2,12,2,14,12,1,12 diff --git a/conf/data/proteingym_v1/struc_seq/20/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta b/conf/data/proteingym_v1/struc_seq/20/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9c6f39dc42dd3278ed711330d17dff623b4facd8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ILF3_HUMAN_Tsuboyama_2023_2L33.fasta @@ -0,0 +1,2 @@ +>ILF3_HUMAN_Tsuboyama_2023_2L33 +8,8,4,0,13,6,13,4,9,9,9,4,9,9,3,3,3,13,15,6,14,1,1,1,1,14,1,14,14,14,15,15,15,14,14,12,12,18,1,1,12,18,6,15,15,14,18,18,18,18,18,18,18,18,0,0,18,18,4,18,18,4,4,4,0,9,3,3,3,3,3 diff --git a/conf/data/proteingym_v1/struc_seq/20/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta b/conf/data/proteingym_v1/struc_seq/20/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta new file mode 100644 index 0000000000000000000000000000000000000000..658f258de9de58260a8aaf32ae36402c44ce79c2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ISDH_STAAW_Tsuboyama_2023_2LHR.fasta @@ -0,0 +1,2 @@ +>ISDH_STAAW_Tsuboyama_2023_2LHR +3,3,3,11,3,16,16,16,10,16,10,9,9,9,9,16,16,9,10,16,16,16,10,16,16,10,16,3,9,9,3,3,3,3,16,3,11,16,16,11,16,16,16,11,16,16,11,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/KCNE1_HUMAN_Muhammad_2023_expression.fasta b/conf/data/proteingym_v1/struc_seq/20/KCNE1_HUMAN_Muhammad_2023_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4b78fe564d552d85c8ea030f89e04a77ae29cfc6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/KCNE1_HUMAN_Muhammad_2023_expression.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_expression +15,15,13,13,3,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,13,13,13,13,13,13,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,3,3,3,3,3,3,3,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,11,3,13,13,15,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/KCNE1_HUMAN_Muhammad_2023_function.fasta b/conf/data/proteingym_v1/struc_seq/20/KCNE1_HUMAN_Muhammad_2023_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9cb63335c6d2f61e533fd3671699f6fb6b1dc6b5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/KCNE1_HUMAN_Muhammad_2023_function.fasta @@ -0,0 +1,2 @@ +>KCNE1_HUMAN_Muhammad_2023_function +15,15,13,13,3,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,13,13,13,13,13,13,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,3,3,3,3,3,3,3,3,3,3,3,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,3,11,3,13,13,15,13,13,13,13,13,13,13,13,13,13,13,15,15,15,15,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/KCNH2_HUMAN_Kozek_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/KCNH2_HUMAN_Kozek_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..79bb3eb7ac86ca5fecf6f60217f29b8793bdc62f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/KCNH2_HUMAN_Kozek_2020.fasta @@ -0,0 +1,2 @@ +>KCNH2_HUMAN_Kozek_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/20/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta b/conf/data/proteingym_v1/struc_seq/20/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0c699a64ab5b567df030c340b93dd01a75559bb5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/KCNJ2_MOUSE_Coyote-Maestas_2022_function.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_function 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diff --git a/conf/data/proteingym_v1/struc_seq/20/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta b/conf/data/proteingym_v1/struc_seq/20/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta new file mode 100644 index 0000000000000000000000000000000000000000..31416602455364ac84528fe22682143435d5dfe7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/KCNJ2_MOUSE_Coyote-Maestas_2022_surface.fasta @@ -0,0 +1,2 @@ +>KCNJ2_MOUSE_Coyote-Maestas_2022_surface 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diff --git a/conf/data/proteingym_v1/struc_seq/20/KKA2_KLEPN_Melnikov_2014.fasta b/conf/data/proteingym_v1/struc_seq/20/KKA2_KLEPN_Melnikov_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..efca327e2cc7056ae9bc2e0c9ccefdcc5abb4065 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/KKA2_KLEPN_Melnikov_2014.fasta @@ -0,0 +1,2 @@ +>KKA2_KLEPN_Melnikov_2014 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b/conf/data/proteingym_v1/struc_seq/20/LGK_LIPST_Klesmith_2015.fasta @@ -0,0 +1,2 @@ +>LGK_LIPST_Klesmith_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/20/LYAM1_HUMAN_Elazar_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/LYAM1_HUMAN_Elazar_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bf39b9d5610ff5dcb9cd4380a30b49f0c78d78e8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/LYAM1_HUMAN_Elazar_2016.fasta @@ -0,0 +1,2 @@ +>LYAM1_HUMAN_Elazar_2016 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a/conf/data/proteingym_v1/struc_seq/20/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta b/conf/data/proteingym_v1/struc_seq/20/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta new file mode 100644 index 0000000000000000000000000000000000000000..9dc8cbec9c99f281f070946dc79f607ec31ee609 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MAFG_MOUSE_Tsuboyama_2023_1K1V.fasta @@ -0,0 +1,2 @@ +>MAFG_MOUSE_Tsuboyama_2023_1K1V +9,3,4,4,0,9,9,0,9,3,9,11,3,9,3,11,3,3,3,3,3,3,3,11,3,11,11,11,16,16,11,16,16,16,11,16,16,11,11,3,16 diff --git a/conf/data/proteingym_v1/struc_seq/20/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta b/conf/data/proteingym_v1/struc_seq/20/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ef031ec47a59fe9c37e504acd8e2a74c22da0798 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MBD11_ARATH_Tsuboyama_2023_6ACV.fasta @@ -0,0 +1,2 @@ +>MBD11_ARATH_Tsuboyama_2023_6ACV 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b/conf/data/proteingym_v1/struc_seq/20/MK01_HUMAN_Brenan_2016.fasta @@ -0,0 +1,2 @@ +>MK01_HUMAN_Brenan_2016 +15,15,13,13,13,13,13,13,15,6,15,15,6,12,15,15,6,6,14,14,1,6,6,18,12,14,12,1,12,12,12,14,14,7,6,7,14,14,12,12,1,12,12,12,7,8,6,6,7,12,12,1,1,1,1,18,18,4,4,10,9,9,4,10,10,10,10,10,10,9,9,4,9,0,6,0,6,6,6,19,19,18,6,14,7,14,12,14,18,1,18,6,6,6,0,13,6,8,6,14,1,1,1,1,1,12,12,12,7,7,7,8,8,0,8,4,9,0,0,0,0,0,0,11,9,9,9,9,9,10,16,4,10,10,4,4,4,9,4,17,8,17,8,8,8,8,8,8,6,8,8,4,7,7,7,7,7,14,6,6,6,18,8,7,7,7,8,0,4,8,18,8,8,6,6,14,6,6,6,6,6,6,13,13,13,13,15,13,13,6,6,8,8,4,10,4,8,13,9,9,0,8,6,6,8,0,4,4,4,4,4,4,4,10,10,4,10,10,10,9,4,4,4,0,0,0,9,9,4,4,8,0,9,9,0,9,9,0,4,4,8,8,8,8,6,8,8,0,3,3,3,9,13,9,9,0,0,9,9,9,9,3,11,9,9,3,0,6,6,7,7,7,0,0,9,3,3,4,9,9,9,9,9,3,3,10,10,11,10,10,4,4,10,10,4,4,0,4,8,4,4,4,10,16,9,9,10,10,3,9,9,9,4,0,9,9,9,0,13,15,13,4,8,4,8,19,8,8,8,6,6,13,13,6,0,13,6,9,9,9,16,16,16,10,11,16,10,9,11,16,9,13,13,6,15,13,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/MLAC_ECOLI_MacRae_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/MLAC_ECOLI_MacRae_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ec9f07dbbb0031de2c200839a135e74b451d1ba8 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MLAC_ECOLI_MacRae_2023.fasta @@ -0,0 +1,2 @@ +>MLAC_ECOLI_MacRae_2023 +15,15,15,15,15,15,15,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,13,8,0,0,18,13,11,3,18,11,16,16,9,16,16,16,9,11,16,9,3,11,11,3,3,11,16,3,11,3,9,4,16,10,10,10,10,10,16,10,16,9,4,0,8,8,8,9,10,9,4,10,10,10,16,10,10,3,9,9,3,9,9,3,3,11,9,10,16,16,10,10,10,10,10,10,10,10,10,10,10,10,10,10,4,4,10,9,13,0,13,6,18,14,1,1,1,1,14,15,15,15,15,13,13,6,7,12,12,1,1,1,1,1,1,12,14,6,6,15,15,15,1,1,1,1,1,1,1,12,12,7,7,8,13,8,8,8,8,18,18,18,18,12,1,1,12,14,0,18,4,4,9,9,16,10,16,16,16,9,3,3,9,9,9,3,9,10,10,9,9,10,16,10,10,10,10,10,10,4,4,4,4,8,0,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/MSH2_HUMAN_Jia_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/MSH2_HUMAN_Jia_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..e5d258da3545ff37e930318a451bd8167863eb3f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MSH2_HUMAN_Jia_2020.fasta @@ -0,0 +1,2 @@ +>MSH2_HUMAN_Jia_2020 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diff --git a/conf/data/proteingym_v1/struc_seq/20/MTH3_HAEAE_RockahShmuel_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/MTH3_HAEAE_RockahShmuel_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..8a4ee9b8f864908c81ae0870636f55f43262eda5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MTH3_HAEAE_RockahShmuel_2015.fasta @@ -0,0 +1,2 @@ +>MTH3_HAEAE_RockahShmuel_2015 +19,5,5,5,5,5,19,17,17,4,17,4,4,17,4,10,10,4,10,16,4,17,17,5,5,5,5,5,19,6,8,13,0,4,17,0,4,8,0,0,0,17,19,5,5,5,5,19,19,17,4,9,13,0,3,9,0,6,19,19,19,5,5,5,5,5,5,19,17,0,8,8,0,0,0,0,4,13,13,13,0,9,3,3,3,3,9,9,9,9,9,16,16,9,16,10,9,4,10,10,0,17,2,17,2,2,2,2,2,2,18,12,0,0,0,9,3,3,9,11,11,11,11,11,11,16,3,11,16,4,0,9,9,0,18,18,1,1,1,1,12,12,7,8,7,7,8,8,8,8,8,19,7,7,18,1,1,1,1,2,18,18,18,6,6,6,0,4,6,18,14,8,7,7,7,6,7,7,8,8,8,8,8,4,9,9,3,4,0,13,8,8,19,19,19,19,6,6,7,7,6,8,6,13,13,8,8,8,0,8,8,7,8,7,19,7,6,6,0,7,8,8,7,6,7,7,7,7,7,19,8,8,19,7,8,19,8,8,8,4,4,8,8,8,8,7,7,7,7,19,7,7,7,14,14,7,7,6,6,8,7,7,7,7,6,13,3,13,6,13,6,7,7,7,8,17,4,4,4,4,4,4,4,4,4,4,0,0,6,8,4,4,4,0,8,8,8,8,4,4,4,4,4,4,4,4,4,4,4,4,10,4,10,10,4,4,10,10,9,18,9,3,0,9,11,3,9,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/MTHR_HUMAN_Weile_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/MTHR_HUMAN_Weile_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..da346f54040294dcece8017cbeb53d0bd173a199 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MTHR_HUMAN_Weile_2021.fasta @@ -0,0 +1,2 @@ +>MTHR_HUMAN_Weile_2021 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diff --git a/conf/data/proteingym_v1/struc_seq/20/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta b/conf/data/proteingym_v1/struc_seq/20/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta new file mode 100644 index 0000000000000000000000000000000000000000..aad253b27e7f2e1241737de40c734e2c292b72e6 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/MYO3_YEAST_Tsuboyama_2023_2BTT.fasta @@ -0,0 +1,2 @@ +>MYO3_YEAST_Tsuboyama_2023_2BTT +14,14,14,12,12,12,14,7,7,7,7,14,14,6,15,6,6,14,14,14,14,7,7,7,7,7,12,12,12,12,12,12,12,18,15,6,18,14,14,12,12,12,12,12,6,7,6,7,14,12,12,12,14,14,6,7,12,12,1,1,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/NCAP_I34A1_Doud_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/NCAP_I34A1_Doud_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..63b596441d881798df834419af92b9625011e2a9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NCAP_I34A1_Doud_2015.fasta @@ -0,0 +1,2 @@ +>NCAP_I34A1_Doud_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/20/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta b/conf/data/proteingym_v1/struc_seq/20/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7e38ef128c7681cee3d85f9c68cf5700f50c3612 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NKX31_HUMAN_Tsuboyama_2023_2L9R.fasta @@ -0,0 +1,2 @@ +>NKX31_HUMAN_Tsuboyama_2023_2L9R +15,15,15,0,0,3,11,3,3,11,11,16,16,11,3,16,11,3,3,3,0,9,13,9,9,3,9,9,11,9,16,16,16,9,9,9,9,16,16,3,9,3,11,16,16,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/NPC1_HUMAN_Erwood_2022_HEK293T.fasta b/conf/data/proteingym_v1/struc_seq/20/NPC1_HUMAN_Erwood_2022_HEK293T.fasta new file mode 100644 index 0000000000000000000000000000000000000000..1bafd0b324532521e30108d68744a1d8b473f024 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NPC1_HUMAN_Erwood_2022_HEK293T.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_HEK293T 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diff --git a/conf/data/proteingym_v1/struc_seq/20/NPC1_HUMAN_Erwood_2022_RPE1.fasta b/conf/data/proteingym_v1/struc_seq/20/NPC1_HUMAN_Erwood_2022_RPE1.fasta new file mode 100644 index 0000000000000000000000000000000000000000..67b7d84c4fe4cd9895e2df71c027ee215a81db1c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NPC1_HUMAN_Erwood_2022_RPE1.fasta @@ -0,0 +1,2 @@ +>NPC1_HUMAN_Erwood_2022_RPE1 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diff --git a/conf/data/proteingym_v1/struc_seq/20/NRAM_I33A0_Jiang_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/NRAM_I33A0_Jiang_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..499a7397ce896211aca6bd4bc6fba24c1a0e38f7 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NRAM_I33A0_Jiang_2016.fasta @@ -0,0 +1,2 @@ +>NRAM_I33A0_Jiang_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/NUD15_HUMAN_Suiter_2020.fasta b/conf/data/proteingym_v1/struc_seq/20/NUD15_HUMAN_Suiter_2020.fasta new file mode 100644 index 0000000000000000000000000000000000000000..451c448dfec407b6a463ccea10fd1d41709040da --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NUD15_HUMAN_Suiter_2020.fasta @@ -0,0 +1,2 @@ +>NUD15_HUMAN_Suiter_2020 +15,15,15,15,15,15,15,15,6,6,19,19,19,2,2,2,2,2,2,2,2,18,6,6,7,6,8,6,2,12,12,12,12,7,7,6,7,6,19,7,7,7,7,18,2,18,18,2,2,2,7,15,13,13,13,2,18,0,18,2,18,0,0,18,8,8,8,18,8,7,18,18,2,12,2,2,2,2,7,2,18,2,7,7,14,13,13,13,0,19,19,2,2,2,2,2,2,2,2,2,18,18,6,13,6,6,6,18,7,7,18,8,8,7,6,7,7,7,14,12,1,14,18,14,6,6,6,6,6,13,0,8,8,8,8,18,2,8,0,8,8,9,9,0,9,0,13,14,6,6,6,13,6,13,0,6,13,3,6,6,19,19,19,6 diff --git a/conf/data/proteingym_v1/struc_seq/20/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta b/conf/data/proteingym_v1/struc_seq/20/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ba580842239745180b618c555d4e5b9d9132121f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NUSA_ECOLI_Tsuboyama_2023_1WCL.fasta @@ -0,0 +1,2 @@ +>NUSA_ECOLI_Tsuboyama_2023_1WCL +9,9,10,3,9,9,9,9,10,9,9,16,10,9,9,9,16,16,16,9,9,9,10,9,9,9,3,9,9,9,4,0,0,4,9,9,3,3,9,3,9,4,3,13,9,13,0,3,13,3,3,3,9,9,16,10,10,16,10,9,10,16,16,16,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta b/conf/data/proteingym_v1/struc_seq/20/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ad62eb65ca03b374884157d17ef4647ac074b25a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/NUSG_MYCTU_Tsuboyama_2023_2MI6.fasta @@ -0,0 +1,2 @@ +>NUSG_MYCTU_Tsuboyama_2023_2MI6 +14,14,14,14,14,7,12,12,12,12,7,7,6,6,14,7,14,7,12,12,12,12,12,12,14,18,6,13,6,6,18,12,12,12,12,12,12,7,15,15,14,14,14,12,12,12,12,14,14,7,12,12,12,12,1 diff --git a/conf/data/proteingym_v1/struc_seq/20/OBSCN_HUMAN_Tsuboyama_2023_1V1C.fasta b/conf/data/proteingym_v1/struc_seq/20/OBSCN_HUMAN_Tsuboyama_2023_1V1C.fasta new file mode 100644 index 0000000000000000000000000000000000000000..098b318391a8482e593166be8cc6d5650531fd74 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/OBSCN_HUMAN_Tsuboyama_2023_1V1C.fasta @@ -0,0 +1,2 @@ +>OBSCN_HUMAN_Tsuboyama_2023_1V1C +14,14,1,12,12,7,7,7,7,14,14,15,13,13,13,6,6,14,14,14,14,7,7,7,7,7,12,1,1,1,12,14,12,15,6,6,18,7,7,12,1,1,12,12,14,6,6,6,15,15,14,12,12,12,12,12,18,12,7,7,12,12,1,1,14 diff --git a/conf/data/proteingym_v1/struc_seq/20/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta b/conf/data/proteingym_v1/struc_seq/20/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b58356ec53d562f186b30edf4bcefd23cfe4bdb2 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/ODP2_GEOSE_Tsuboyama_2023_1W4G.fasta @@ -0,0 +1,2 @@ +>ODP2_GEOSE_Tsuboyama_2023_1W4G 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b/conf/data/proteingym_v1/struc_seq/20/OTC_HUMAN_Lo_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6ecdf851ae471ad2de7b440097601bc27ce11309 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/OTC_HUMAN_Lo_2023.fasta @@ -0,0 +1,2 @@ +>OTC_HUMAN_Lo_2023 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b/conf/data/proteingym_v1/struc_seq/20/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta new file mode 100644 index 0000000000000000000000000000000000000000..b351a6c7441630ba3e6e2442f96a4fbbabec0edc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/OTU7A_HUMAN_Tsuboyama_2023_2L2D.fasta @@ -0,0 +1,2 @@ +>OTU7A_HUMAN_Tsuboyama_2023_2L2D +15,9,3,9,16,16,10,10,9,16,10,16,9,16,9,3,9,9,16,16,16,10,10,16,10,10,10,16,16,10,10,10,10,16,16,16,16,11,16,9,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/OXDA_RHOTO_Vanella_2023_activity.fasta b/conf/data/proteingym_v1/struc_seq/20/OXDA_RHOTO_Vanella_2023_activity.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2aef099227a56e804ba83d883c368d6847d3d2c5 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/OXDA_RHOTO_Vanella_2023_activity.fasta @@ -0,0 +1,2 @@ +>OXDA_RHOTO_Vanella_2023_activity 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b/conf/data/proteingym_v1/struc_seq/20/OXDA_RHOTO_Vanella_2023_expression.fasta new file mode 100644 index 0000000000000000000000000000000000000000..65995ed3ac2075e0b4d15ffafc9dc92f2e21defe --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/OXDA_RHOTO_Vanella_2023_expression.fasta @@ -0,0 +1,2 @@ +>OXDA_RHOTO_Vanella_2023_expression 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b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta new file mode 100644 index 0000000000000000000000000000000000000000..c73c9928c9f8b4ac556d1ddc8abc2133e3c5f29d --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_Null_Etoposide.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_Null_Etoposide 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diff --git a/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta new file mode 100644 index 0000000000000000000000000000000000000000..a91824efd44d7b259209453044233c31ab4864b3 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_Null_Nutlin.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_Null_Nutlin 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diff --git a/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta new file mode 100644 index 0000000000000000000000000000000000000000..100c8b75c9f801b769ac64803ba3ee1d082e3237 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Giacomelli_2018_WT_Nutlin.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Giacomelli_2018_WT_Nutlin 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diff --git a/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Kotler_2018.fasta b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Kotler_2018.fasta new file mode 100644 index 0000000000000000000000000000000000000000..043e025d6810cff9ab23bab50bb2a2bb61bb9b2f --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/P53_HUMAN_Kotler_2018.fasta @@ -0,0 +1,2 @@ +>P53_HUMAN_Kotler_2018 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a/conf/data/proteingym_v1/struc_seq/20/P84126_THETH_Chan_2017.fasta b/conf/data/proteingym_v1/struc_seq/20/P84126_THETH_Chan_2017.fasta new file mode 100644 index 0000000000000000000000000000000000000000..4596901371b479fbb2d71ecbe12f50bd6b8a55f9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/P84126_THETH_Chan_2017.fasta @@ -0,0 +1,2 @@ +>P84126_THETH_Chan_2017 +6,8,8,6,4,13,13,9,9,3,9,9,9,3,9,9,16,16,0,0,3,3,13,13,6,15,15,8,8,7,8,19,19,19,19,17,5,17,4,17,5,8,4,6,17,17,5,5,5,5,5,17,7,7,7,7,8,8,8,7,7,8,6,6,0,4,4,9,10,4,17,4,10,4,4,10,9,4,17,17,5,5,5,5,19,17,8,8,8,8,7,7,8,0,4,10,4,4,4,10,4,4,4,9,17,19,17,5,5,5,5,5,19,17,8,8,0,4,0,0,17,4,4,17,17,8,4,8,17,5,5,5,5,17,19,4,4,4,0,4,10,4,9,9,10,4,4,9,9,4,9,9,9,17,17,17,5,5,5,5,17,17,4,9,9,9,9,16,9,4,4,16,9,4,17,19,5,5,5,5,19,19,6,8,8,8,6,8,6,6,6,8,3,8,17,9,16,9,4,3,16,9,9,11,3,3,0,17,17,5,5,5,5,5,19,19,6,0,4,3,3,9,17,3,3,17,17,0,8,17,5,5,5,5,5,19,19,8,4,8,8,4,0,10,10,10,10,4,4,9,4,4,8,4 diff --git a/conf/data/proteingym_v1/struc_seq/20/PABP_YEAST_Melamed_2013.fasta b/conf/data/proteingym_v1/struc_seq/20/PABP_YEAST_Melamed_2013.fasta new file mode 100644 index 0000000000000000000000000000000000000000..31138997bf3e036306f71d2c084eaa802eaf3970 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PABP_YEAST_Melamed_2013.fasta @@ -0,0 +1,2 @@ +>PABP_YEAST_Melamed_2013 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diff --git a/conf/data/proteingym_v1/struc_seq/20/PAI1_HUMAN_Huttinger_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/PAI1_HUMAN_Huttinger_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..ab708f6485663d1f3bd5f1ae86f1e509e331d40c --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PAI1_HUMAN_Huttinger_2021.fasta @@ -0,0 +1,2 @@ +>PAI1_HUMAN_Huttinger_2021 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a/conf/data/proteingym_v1/struc_seq/20/PA_I34A1_Wu_2015.fasta b/conf/data/proteingym_v1/struc_seq/20/PA_I34A1_Wu_2015.fasta new file mode 100644 index 0000000000000000000000000000000000000000..bf6165cb4aad063b442e50c5ea19fbf56f45970b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PA_I34A1_Wu_2015.fasta @@ -0,0 +1,2 @@ +>PA_I34A1_Wu_2015 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diff --git a/conf/data/proteingym_v1/struc_seq/20/PHOT_CHLRE_Chen_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/PHOT_CHLRE_Chen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..7a6f56cdb8ecc87b3c69228d456d96eb2d10ae8e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PHOT_CHLRE_Chen_2023.fasta @@ -0,0 +1,2 @@ +>PHOT_CHLRE_Chen_2023 +15,15,15,6,18,18,1,1,1,12,7,7,7,7,6,6,18,6,7,12,12,12,18,18,0,18,0,0,8,8,0,0,0,13,13,13,6,7,8,8,8,7,8,6,7,18,14,15,12,18,6,3,11,3,3,11,11,0,11,11,0,0,11,3,18,18,12,18,1,14,1,12,12,12,7,8,7,6,7,8,7,7,12,12,1,1,1,1,1,12,12,7,14,6,6,6,6,7,7,14,12,1,1,1,1,12,12,12,18,0,3,3,13,0,3,3,0,0 diff --git a/conf/data/proteingym_v1/struc_seq/20/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta b/conf/data/proteingym_v1/struc_seq/20/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f884d4d4e81c5ef4b62f6ccbfe50ef78f9c7ede9 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PIN1_HUMAN_Tsuboyama_2023_1I6C.fasta @@ -0,0 +1,2 @@ +>PIN1_HUMAN_Tsuboyama_2023_1I6C +6,6,6,6,18,7,12,12,12,14,6,6,6,6,6,6,14,12,12,12,7,18,8,6,6,14,12,14,12,14,14,14,6,6,15,15,15,15,15 diff --git a/conf/data/proteingym_v1/struc_seq/20/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta b/conf/data/proteingym_v1/struc_seq/20/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta new file mode 100644 index 0000000000000000000000000000000000000000..74bf7e39e97effe6a7ee2df4d9ce0ff7c102e353 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PITX2_HUMAN_Tsuboyama_2023_2L7M.fasta @@ -0,0 +1,2 @@ +>PITX2_HUMAN_Tsuboyama_2023_2L7M +15,15,0,0,3,16,9,3,11,16,16,16,11,16,16,11,3,9,3,9,9,13,9,9,9,9,9,16,10,16,9,16,9,9,10,9,16,16,9,16,9,11,11,16,11,11,11,16,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta b/conf/data/proteingym_v1/struc_seq/20/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2606481984f776b3248c7f8f503d8a86cb65593e --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PKN1_HUMAN_Tsuboyama_2023_1URF.fasta @@ -0,0 +1,2 @@ +>PKN1_HUMAN_Tsuboyama_2023_1URF +13,9,9,3,16,9,16,11,16,16,11,11,16,16,11,16,16,11,16,16,16,11,16,16,16,16,16,16,16,16,16,16,10,16,9,9,9,3,3,3,9,16,11,16,16,16,16,16,16,11,16,16,16,10,16,16,11,16,16,11,11,16,16,11,16,16,16,16,10,9,10 diff --git a/conf/data/proteingym_v1/struc_seq/20/POLG_CXB3N_Mattenberger_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/POLG_CXB3N_Mattenberger_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..cbdbd8fccb9146ffda2c6d11fd0fd123b76ca33a --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/POLG_CXB3N_Mattenberger_2021.fasta @@ -0,0 +1,2 @@ +>POLG_CXB3N_Mattenberger_2021 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,10,10,10,10,4,9,10,0,18,18,6,18,8,9,0,6,18,18,18,18,8,8,0,8,7,7,12,12,2,14,19,19,14,18,6,6,0,9,9,18,9,9,9,9,9,4,8,8,0,18,18,6,14,6,6,6,6,13,6,6,14,6,14,6,6,6,14,7,7,7,7,7,7,7,8,8,8,6,0,6,6,0,8,8,8,8,7,8,0,9,0,9,9,4,18,4,4,18,18,8,18,18,13,3,3,9,9,9,3,10,3,11,16,10,10,4,9,4,4,0,9,16,11,11,16,16,11,16,10,16,16,10,9,10,10,9,9,4,13,13,9,0,4,4,9,9,16,11,16,16,11,11,16,16,11,16,9 diff --git a/conf/data/proteingym_v1/struc_seq/20/POLG_DEN26_Suphatrakul_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/POLG_DEN26_Suphatrakul_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0959b5ac60cfe19a49ad2a2803cdabfcf2b95e4b --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/POLG_DEN26_Suphatrakul_2023.fasta @@ -0,0 +1,2 @@ +>POLG_DEN26_Suphatrakul_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/20/POLG_HCVJF_Qi_2014.fasta b/conf/data/proteingym_v1/struc_seq/20/POLG_HCVJF_Qi_2014.fasta new file mode 100644 index 0000000000000000000000000000000000000000..10f032d49fb1d12d415875cffe5bd6fb4800e5ae --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/POLG_HCVJF_Qi_2014.fasta @@ -0,0 +1,2 @@ +>POLG_HCVJF_Qi_2014 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diff --git a/conf/data/proteingym_v1/struc_seq/20/POLG_PESV_Tsuboyama_2023_2MXD.fasta b/conf/data/proteingym_v1/struc_seq/20/POLG_PESV_Tsuboyama_2023_2MXD.fasta new file mode 100644 index 0000000000000000000000000000000000000000..db6b436680c16cf49a04b9a6eb8556dd606e4a78 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/POLG_PESV_Tsuboyama_2023_2MXD.fasta @@ -0,0 +1,2 @@ +>POLG_PESV_Tsuboyama_2023_2MXD +13,9,3,11,11,16,16,11,16,11,16,11,3,3,11,11,3,3,13,13,3,3,16,3,3,16,11,16,16,16,16,9,16,16,9,9,9,9,9,3,9,16,9,11,16,11,11,11,11,11,11,11,11 diff --git a/conf/data/proteingym_v1/struc_seq/20/PPARG_HUMAN_Majithia_2016.fasta b/conf/data/proteingym_v1/struc_seq/20/PPARG_HUMAN_Majithia_2016.fasta new file mode 100644 index 0000000000000000000000000000000000000000..6f8ae542deff00b6786bec811b97275b1abbb088 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PPARG_HUMAN_Majithia_2016.fasta @@ -0,0 +1,2 @@ +>PPARG_HUMAN_Majithia_2016 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diff --git a/conf/data/proteingym_v1/struc_seq/20/PPM1D_HUMAN_Miller_2022.fasta b/conf/data/proteingym_v1/struc_seq/20/PPM1D_HUMAN_Miller_2022.fasta new file mode 100644 index 0000000000000000000000000000000000000000..aae8dfe4471706be0a56ccadb94ae0a8ed726713 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PPM1D_HUMAN_Miller_2022.fasta @@ -0,0 +1,2 @@ +>PPM1D_HUMAN_Miller_2022 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diff --git a/conf/data/proteingym_v1/struc_seq/20/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta b/conf/data/proteingym_v1/struc_seq/20/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta new file mode 100644 index 0000000000000000000000000000000000000000..af80469f132b816e42231e046562e66605d3f878 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PR40A_HUMAN_Tsuboyama_2023_1UZC.fasta @@ -0,0 +1,2 @@ +>PR40A_HUMAN_Tsuboyama_2023_1UZC +13,9,4,9,4,9,9,3,9,10,10,16,16,10,16,16,16,10,16,11,9,9,10,4,0,13,0,9,16,3,3,9,9,3,9,16,16,11,16,3,9,10,9,9,10,9,3,3,11,16,10,11,16,16,10,16,11,16,9,16,16,9,16 diff --git a/conf/data/proteingym_v1/struc_seq/20/PRKN_HUMAN_Clausen_2023.fasta b/conf/data/proteingym_v1/struc_seq/20/PRKN_HUMAN_Clausen_2023.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2df4e03fd749bfab72f1f620c2461ae0ef4011dc --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PRKN_HUMAN_Clausen_2023.fasta @@ -0,0 +1,2 @@ +>PRKN_HUMAN_Clausen_2023 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diff --git a/conf/data/proteingym_v1/struc_seq/20/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta b/conf/data/proteingym_v1/struc_seq/20/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta new file mode 100644 index 0000000000000000000000000000000000000000..eb604f4abafdee782471acfd8045652077918530 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PSAE_SYNP2_Tsuboyama_2023_1PSE.fasta @@ -0,0 +1,2 @@ +>PSAE_SYNP2_Tsuboyama_2023_1PSE +15,12,14,14,7,12,12,12,12,12,7,6,13,13,6,6,6,6,14,6,12,12,12,12,12,7,7,15,6,15,15,6,6,7,14,7,12,12,12,14,14,7,7,14,14,15,6,15,13,15,15,6,6,14,14,14,12,12,12,7,7,7,6,7,12,12,1,1 diff --git a/conf/data/proteingym_v1/struc_seq/20/PTEN_HUMAN_Matreyek_2021.fasta b/conf/data/proteingym_v1/struc_seq/20/PTEN_HUMAN_Matreyek_2021.fasta new file mode 100644 index 0000000000000000000000000000000000000000..aaf57b62191af38166869f2e6a7cb27b94997e91 --- /dev/null +++ b/conf/data/proteingym_v1/struc_seq/20/PTEN_HUMAN_Matreyek_2021.fasta @@ -0,0 +1,2 @@ +>PTEN_HUMAN_Matreyek_2021 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