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README.md
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- Variant Effect Prediction
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- AlphaGenome
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datasets:
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- OneScience-
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---
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<p align="center">
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# Model Description
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AlphaGenome is implemented in JAX / Flax and supports genomic interval inference, variant effect scoring, track evaluation, and example fine-tuning workflows. This model package is accompanied by the Hugging Face dataset `OneScience-
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# Use Cases
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### Download the Model Package
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```bash
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hf download --model OneScience-
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cd alphagenome
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```
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### Data for Inference, Evaluation, and Fine-Tuning
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The OneScience community has uploaded the data required for AlphaGenome inference, evaluation, and fine-tuning to Hugging Face: [OneScience-
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```bash
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hf download --dataset OneScience-
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```
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### Model Weights
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# Data Format
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It is recommended to download the Hugging Face dataset `OneScience-
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```text
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data/
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- Variant Effect Prediction
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- AlphaGenome
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datasets:
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- OneScience-Group/alphagenome_dataset
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---
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<p align="center">
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# Model Description
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AlphaGenome is implemented in JAX / Flax and supports genomic interval inference, variant effect scoring, track evaluation, and example fine-tuning workflows. This model package is accompanied by the Hugging Face dataset `OneScience-Group/alphagenome_dataset`, which enables rapid local validation.
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# Use Cases
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### Download the Model Package
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```bash
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hf download --model OneScience-Group/alphagenome --local-dir ./alphagenome
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cd alphagenome
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```
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### Data for Inference, Evaluation, and Fine-Tuning
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The OneScience community has uploaded the data required for AlphaGenome inference, evaluation, and fine-tuning to Hugging Face: [OneScience-Group/alphagenome_dataset](https://huggingface.co/datasets/OneScience-Group/alphagenome_dataset). After downloading, place the data in the `data/` directory under the model package.
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```bash
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hf download --dataset OneScience-Group/alphagenome_dataset --local-dir ./data
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```
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### Model Weights
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# Data Format
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It is recommended to download the Hugging Face dataset `OneScience-Group/alphagenome_dataset` to `data/` under the model package. The default directory structure is as follows:
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```text
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data/
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