{
  "project": "flex_ddG_tutorial",
  "purpose": "Directory layout metadata only. This file is not used by the runtime scripts.",
  "layout": {
    "conf": {
      "description": "Rosetta XML protocols and related protocol configuration files.",
      "paths": [
        "conf/ddG-backrub.xml",
        "conf/ddG-no_backrub_control.xml",
        "conf/per_chain_rescore.xml",
        "conf/split_protocol/",
        "conf/fig-overview.png"
      ]
    },
    "scripts": {
      "description": "Python entry points, helper modules, and bundled example input data.",
      "paths": [
        "scripts/run_example_1.py",
        "scripts/run_example_2_saturation.py",
        "scripts/analyze_flex_ddG.py",
        "scripts/extract_structures.py",
        "scripts/inputs/"
      ]
    },
    "root": {
      "description": "Top-level documentation, license, and static overview assets.",
      "paths": [
        "README.md",
        "LICENSE"
      ]
    }
  }
}