Update README.md

README.md

@@ -36,7 +36,7 @@ This Hugging Face package is designed for immediate use after download, rapid lo
 | Scenario | Description |
 | :---: | :--- |
 | Complex structure prediction | Takes a Protenix JSON file and locally generated MSA features as input and outputs predicted structures in CIF format and confidence scores in JSON format. |
-| Full Hugging Face package validation | Uses the included `config/`, `models/`, `scripts/`, `examples/`, and `weight/` directories to run preflight checks and inference directly. |
+| Full Hugging Face package validation | Uses the included `config/`, `models/`, `scripts/`, `examples/`, and `weights/` directories to run preflight checks and inference directly. |
 | Fine-tuning pipeline validation | Starts the fine-tuning workflow using the included weights and `ft_datasets/finetune_subset.txt`. |
 | Training pipeline setup | Supports single-GPU training once the complete Protenix dataset is provided. |
 
@@ -87,8 +87,9 @@ pip install onescience[bio] -i http://mirrors.onescience.ai:3141/pypi/simple/  -
 ### 2. Download the Model Package and Dataset
 
 ```bash
-hf download --model OneScience-Group/protenix --local-dir ./protenix
-hf download --model OneScience-Group/protenix_dataset --local-dir ./protenix_dataset
+hf download OneScience-Group/protenix --local-dir ./protenix
+hf download OneScience-Group/protenix_dataset --repo-type dataset --local-dir ./protenix_dataset
+cd protenix
 ```
 
 ### Model Weights
@@ -106,14 +107,14 @@ python scripts/preflight.py --strict-weights --strict-imports
 If the full dataset is already prepared:
 
 ```bash
-export DATA_ROOT_DIR=../bio_protenix_dataset
+export DATA_ROOT_DIR=../protenix_dataset
 python scripts/preflight.py --strict-weights --strict-imports --strict-data
 ```
 
 ### 4. Run Inference
 
 ```bash
-export DATA_ROOT_DIR=../bio_protenix_dataset
+export DATA_ROOT_DIR=../protenix_dataset
 bash scripts/inference_unified_demo.sh
 ```
 
@@ -128,14 +129,14 @@ output_unified/7r6r/seed_101/predictions/
 Training:
 
 ```bash
-export DATA_ROOT_DIR=../bio_protenix_dataset
+export DATA_ROOT_DIR=../protenix_dataset
 bash scripts/train_demo.sh
 ```
 
 Fine-tuning:
 
 ```bash
-export DATA_ROOT_DIR=../bio_protenix_dataset
+export DATA_ROOT_DIR=../protenix_dataset
 bash scripts/finetune_demo.sh
 ```