AlphaFold3 / weight /_dep /libcifpp /src /condition.cpp
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/*-
* SPDX-License-Identifier: BSD-2-Clause
*
* Copyright (c) 2022 NKI/AVL, Netherlands Cancer Institute
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
* ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
* ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
#include "cif++/category.hpp"
#include "cif++/condition.hpp"
namespace cif
{
iset get_category_items(const category &cat)
{
return cat.key_items();
}
uint16_t get_item_ix(const category &cat, std::string_view col)
{
return cat.get_item_ix(col);
}
bool is_item_type_uchar(const category &cat, std::string_view col)
{
bool result = false;
auto cv = cat.get_cat_validator();
if (cv)
{
auto iv = cv->get_validator_for_item(col);
if (iv != nullptr and iv->m_type != nullptr)
{
auto type = iv->m_type;
result = type->m_primitive_type == DDL_PrimitiveType::UChar;
}
}
return result;
}
namespace detail
{
condition_impl *key_equals_condition_impl::prepare(const category &c)
{
m_item_ix = c.get_item_ix(m_item_name);
m_icase = is_item_type_uchar(c, m_item_name);
if (c.get_cat_validator() != nullptr and
c.key_item_indices().contains(m_item_ix) and
c.key_item_indices().size() == 1)
{
m_single_hit = c[{ { m_item_name, m_value } }];
}
return this;
}
bool found_in_range(condition_impl *c, std::vector<and_condition_impl *>::iterator b, std::vector<and_condition_impl *>::iterator e)
{
bool result = true;
for (auto s = b; s != e; ++s)
{
auto &cs = (*s)->m_sub;
if (find_if(cs.begin(), cs.end(), [c](const condition_impl *i) { return i->equals(c); }) == cs.end())
{
result = false;
break;
}
}
return result;
}
condition_impl *and_condition_impl::combine_equal(std::vector<and_condition_impl *> &subs, or_condition_impl *oc)
{
and_condition_impl *and_result = nullptr;
auto first = subs.front();
auto &fc = first->m_sub;
for (auto c : fc)
{
if (not found_in_range(c, subs.begin() + 1, subs.end()))
continue;
if (and_result == nullptr)
and_result = new and_condition_impl();
and_result->m_sub.push_back(c);
fc.erase(remove(fc.begin(), fc.end(), c), fc.end());
for (auto sub : subs)
{
auto &ssub = sub->m_sub;
for (auto sc : ssub)
{
if (not sc->equals(c))
continue;
ssub.erase(remove(ssub.begin(), ssub.end(), sc), ssub.end());
delete sc;
break;
}
}
}
if (and_result != nullptr)
{
and_result->m_sub.push_back(oc);
return and_result;
}
return oc;
}
condition_impl *or_condition_impl::prepare(const category &c)
{
std::vector<and_condition_impl *> and_conditions;
for (auto &sub : m_sub)
{
sub = sub->prepare(c);
if (typeid(*sub) == typeid(and_condition_impl))
and_conditions.push_back(static_cast<and_condition_impl *>(sub));
}
if (and_conditions.size() == m_sub.size())
return and_condition_impl::combine_equal(and_conditions, this);
return this;
}
} // namespace detail
void condition::prepare(const category &c)
{
if (m_impl)
m_impl = m_impl->prepare(c);
m_prepared = true;
}
} // namespace cif