#!/bin/sh # Code updated based on a bug report in Ubuntu: # Bug #1999259 reported by Kyler Laird on 2022-12-09 set -e # Get the effective UID, but do so in a compatible way (we may be running dash) euid=${EUID:-$(id -u)} if [ "${euid}" -ne 0 ]; then echo "Please run as root" exit 1 fi if [ -f "@CIFPP_ETC_DIR@/libcifpp.conf" ]; then . "@CIFPP_ETC_DIR@/libcifpp.conf" fi # check to see if we're supposed to run at all if [ "$update" != "true" ]; then exit 0 fi # if cache directory doesn't exist, exit. if ! [ -d "@CIFPP_CACHE_DIR@" ]; then echo "Cache directory '@CIFPP_CACHE_DIR@' does not exist" exit 1 fi # Create a temp file in the right directory and # make sure it is cleaned up when this script exits tmpfile=$(mktemp) trap "rm -f \"${tmpfile}\"" EXIT update_dictionary() { dict=$1 source=$2 # Using curl with # --location (follow redirects) # --silent (no diagnostic output at all) # --time-cond (only fetch if source is newer) # # Output is extracted and written to $tmpfile and when successful # the tmpfile is placed at the desired location and updated is set # to true curl --silent --location --compressed --time-cond "${dict}" "${source}" | ( # uncompress the file on the fly, if it is compressed if [ "${source%.gz}" != "${source}" ]; then gunzip -c > "${tmpfile}" 2>/dev/null else cat > "${tmpfile}" fi ) && ( mv "${tmpfile}" "${dict}" && chmod a+r "${dict}" ) || true } # Update the dictionaries update_dictionary "@CIFPP_CACHE_DIR@/components.cif" "https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz" update_dictionary "@CIFPP_CACHE_DIR@/mmcif_pdbx.dic" "https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic.gz" update_dictionary "@CIFPP_CACHE_DIR@/mmcif_ma.dic" "https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic" # notify subscribers, using find instead of run-parts to make it work on FreeBSD as well if [ -d "@CIFPP_ETC_DIR@/libcifpp/cache-update.d" ]; then find "@CIFPP_ETC_DIR@/libcifpp/cache-update.d" \ -exec test -x {} \; -and -not -exec test -d {} \; \ -exec {} "@CIFPP_CACHE_DIR@" \; fi exit 0