#!/usr/bin/env bash set -euo pipefail source ${ROCM_PATH}/cuda/env.sh export LD_LIBRARY_PATH=${ROCM_PATH}/opencl/lib:$LD_LIBRARY_PATH SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" ROOT_DIR="$(cd "${SCRIPT_DIR}/../../.." && pwd)" echo ${ROOT_DIR} source ${ROOT_DIR}/env.sh cd "${ROOT_DIR}" export PYTHONPATH="${ROOT_DIR}/src:${PYTHONPATH:-}" if [[ -n "${CONDA_PREFIX:-}" ]]; then export LD_LIBRARY_PATH="${CONDA_PREFIX}/lib:${CONDA_PREFIX}/lib/python3.11/site-packages/torch/lib:${CONDA_PREFIX}/lib/python3.11/site-packages/fastpt/torch/lib:/opt/dtk/.hyhal/rocm_smi/lib:${LD_LIBRARY_PATH:-}" fi GENSCORE_DATA_DIR="${GENSCORE_DATA_DIR:-${ONESCIENCE_DATASETS_DIR}/GenScore/genscore_data/rtmscore_s}" GENSCORE_DATA_PREFIX="${GENSCORE_DATA_PREFIX:-v2020_train}" GENSCORE_ENCODER="${GENSCORE_ENCODER:-gatedgcn}" GENSCORE_MODEL_PATH="${GENSCORE_MODEL_PATH:-${SCRIPT_DIR}/genscore_${GENSCORE_ENCODER}_full_3000.pth}" GENSCORE_NUM_EPOCHS="${GENSCORE_NUM_EPOCHS:-3000}" GENSCORE_BATCH_SIZE="${GENSCORE_BATCH_SIZE:-64}" GENSCORE_NUM_WORKERS="${GENSCORE_NUM_WORKERS:-8}" GENSCORE_VALNUM="${GENSCORE_VALNUM:-1500}" GENSCORE_PATIENCE="${GENSCORE_PATIENCE:-70}" for suffix in ids.npy lig.pt prot.pt; do path="${GENSCORE_DATA_DIR}/${GENSCORE_DATA_PREFIX}_${suffix}" if [[ ! -f "${path}" ]]; then echo "Missing required training file: ${path}" >&2 exit 1 fi done mkdir -p "$(dirname "${GENSCORE_MODEL_PATH}")" echo "GenScore full training" echo " data_dir: ${GENSCORE_DATA_DIR}" echo " data_prefix: ${GENSCORE_DATA_PREFIX}" echo " model_path: ${GENSCORE_MODEL_PATH}" echo " encoder: ${GENSCORE_ENCODER}" echo " num_epochs: ${GENSCORE_NUM_EPOCHS}" echo " batch_size: ${GENSCORE_BATCH_SIZE}" echo " num_workers: ${GENSCORE_NUM_WORKERS}" echo " valnum: ${GENSCORE_VALNUM}" echo " patience: ${GENSCORE_PATIENCE}" python ${SCRIPT_DIR}/train_genscore.py \ --data_dir "${GENSCORE_DATA_DIR}" \ --data_prefix "${GENSCORE_DATA_PREFIX}" \ --model_path "${GENSCORE_MODEL_PATH}" \ --num_epochs "${GENSCORE_NUM_EPOCHS}" \ --batch_size "${GENSCORE_BATCH_SIZE}" \ --num_workers "${GENSCORE_NUM_WORKERS}" \ --valnum "${GENSCORE_VALNUM}" \ --patience "${GENSCORE_PATIENCE}" \ --encoder "${GENSCORE_ENCODER}"