SimpleFold / config /model /architecture /plddt_module.yaml
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_target_: models.simplefold.torch.confidence_module.ConfidenceModule
hidden_size: 1536
num_plddt_bins: 50
transformer_blocks:
_target_: models.simplefold.torch.blocks.HomogenTrunk
depth: 4
block:
_target_: models.simplefold.torch.blocks.TransformerBlock
_partial_: true
hidden_size: 1536
mlp_ratio: 4.0
use_swiglu: True # SwiGLU FFN
self_attention_layer:
_target_: models.simplefold.torch.layers.EfficientSelfAttentionLayer
_partial_: True
hidden_size: 1536
num_heads: 24
qk_norm: True
pos_embedder:
_target_: models.simplefold.torch.pos_embed.AxialRotaryPositionEncoding
in_dim: 4
embed_dim: 1536
num_heads: 24
base: 100.0