Migrate release files 271-300

.gitattributes

@@ -97,3 +97,4 @@ examples/tcga_he/05660.png filter=lfs diff=lfs merge=lfs -text
 examples/tcga_he/05757.png filter=lfs diff=lfs merge=lfs -text
 examples/tcga_he/05776.png filter=lfs diff=lfs merge=lfs -text
 examples/tcga_he/06007.png filter=lfs diff=lfs merge=lfs -text
+results/example_quadruplets.png filter=lfs diff=lfs merge=lfs -text

results/before_text_clean/external_long.csv

@@ -0,0 +1,36 @@
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results/before_text_clean/external_summary.csv

@@ -0,0 +1,10 @@
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results/before_text_clean/final_long.csv

@@ -0,0 +1,244 @@
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results/before_text_clean/final_splits.csv

@@ -0,0 +1,49 @@
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+ORION H&E-mIF,official,0,val,124,2.0,patient,
+ORION H&E-mIF,official,0,test,109,2.0,patient,

results/before_text_clean/final_summary.csv

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results/data_summary.json

@@ -0,0 +1,141 @@
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+  "E-cadherin",
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+}

results/embed_check.csv

@@ -0,0 +1,18 @@
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results/external_check.csv

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results/final_cv_tests.csv

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results/final_ens_long.csv

@@ -0,0 +1,201 @@
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results/final_ens_summary.csv

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results/final_ens_tests.csv

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results/final_long.csv

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results/final_splits.csv

@@ -0,0 +1,49 @@
+dataset,split,fold,role,n_items,n_patient,unit,n_group
+TCGA image-text,patient 5-fold,0,train,4419,2944.0,patient,
+TCGA image-text,patient 5-fold,0,val,496,327.0,patient,
+TCGA image-text,patient 5-fold,0,test,1229,817.0,patient,
+TCGA image-text,patient 5-fold,1,train,4419,2943.0,patient,
+TCGA image-text,patient 5-fold,1,val,496,327.0,patient,
+TCGA image-text,patient 5-fold,1,test,1229,818.0,patient,
+TCGA image-text,patient 5-fold,2,train,4440,2943.0,patient,
+TCGA image-text,patient 5-fold,2,val,475,327.0,patient,
+TCGA image-text,patient 5-fold,2,test,1229,818.0,patient,
+TCGA image-text,patient 5-fold,3,train,4417,2943.0,patient,
+TCGA image-text,patient 5-fold,3,val,498,327.0,patient,
+TCGA image-text,patient 5-fold,3,test,1229,818.0,patient,
+TCGA image-text,patient 5-fold,4,train,4437,2944.0,patient,
+TCGA image-text,patient 5-fold,4,val,479,327.0,patient,
+TCGA image-text,patient 5-fold,4,test,1228,817.0,patient,
+HEST spot-RNA,group 5-fold,0,train,7042,,group,93.0
+HEST spot-RNA,group 5-fold,0,val,546,,group,10.0
+HEST spot-RNA,group 5-fold,0,test,1896,,group,23.0
+HEST spot-RNA,group 5-fold,1,train,6841,,group,92.0
+HEST spot-RNA,group 5-fold,1,val,747,,group,10.0
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+HEST spot-RNA,group 5-fold,2,train,7390,,group,90.0
+HEST spot-RNA,group 5-fold,2,val,198,,group,10.0
+HEST spot-RNA,group 5-fold,2,test,1896,,group,26.0
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+ORION H&E-mIF,patient 5-fold,0,test,692,8.0,patient,
+ORION H&E-mIF,patient 5-fold,1,train,2366,29.0,patient,
+ORION H&E-mIF,patient 5-fold,1,val,276,3.0,patient,
+ORION H&E-mIF,patient 5-fold,1,test,545,8.0,patient,
+ORION H&E-mIF,patient 5-fold,2,train,2364,29.0,patient,
+ORION H&E-mIF,patient 5-fold,2,val,276,3.0,patient,
+ORION H&E-mIF,patient 5-fold,2,test,547,8.0,patient,
+ORION H&E-mIF,patient 5-fold,3,train,2207,29.0,patient,
+ORION H&E-mIF,patient 5-fold,3,val,276,3.0,patient,
+ORION H&E-mIF,patient 5-fold,3,test,704,8.0,patient,
+ORION H&E-mIF,patient 5-fold,4,train,2212,29.0,patient,
+ORION H&E-mIF,patient 5-fold,4,val,276,3.0,patient,
+ORION H&E-mIF,patient 5-fold,4,test,699,8.0,patient,
+ORION H&E-mIF,official,0,train,2954,36.0,patient,
+ORION H&E-mIF,official,0,val,124,2.0,patient,
+ORION H&E-mIF,official,0,test,109,2.0,patient,

results/final_summary.csv

@@ -0,0 +1,69 @@
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results/fm_retrieval.csv

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+fm-scgpt,fm:virtues,all,protein->gene (emergent),CD3e,0.37173528816276685,0.0010187511722088724
+fm-scgpt,fm:virtues,all,protein->gene (emergent),CD4,0.33047448833567383,0.01655404426000161
+fm-scgpt,fm:virtues,all,protein->gene (emergent),CD8a,0.2846497283206885,-0.029745510897042894
+fm-scgpt,fm:virtues,all,protein->gene (emergent),FOXP3,0.29751320105420437,-0.03835292258431707
+fm-scgpt,fm:virtues,all,protein->gene (emergent),CD20,0.37336478770294274,-0.005179951253682326
+fm-scgpt,fm:virtues,all,protein->gene (emergent),PD-L1,0.09675179788469677,-0.009996064343958591
+fm-scgpt,fm:virtues,all,protein->gene (emergent),PD-1,0.2395955399693661,0.01031936484970687
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD45,0.42674225118516196,-0.013113561696978245
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),Pan-CK,0.7671211382535699,0.023964372801682617
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),E-cadherin,0.7911331459449241,0.019081427095176396
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),SMA,0.5504964232295595,0.030571982929738777
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),Ki67,0.6446686481644591,-0.027986204689952072
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD31,0.21501012407466563,0.015273993276063016
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD68,0.2937432331888928,-7.78555794617015e-05
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD163,0.2689597080636084,0.030542597866367725
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD3e,0.3173508578838208,-0.012265551179167706
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD4,0.2417650120183378,-0.007671648880413098
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD8a,0.19891015186191774,-0.015983426740434112
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),FOXP3,0.17189439048768798,0.004669006025883125
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),CD20,0.23355237786099534,0.008350631988304772
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),PD-L1,0.07213454482793975,-0.025754955158916536
+fm-scgpt,fm:virtues,all,he->gene (cross-dataset),PD-1,0.17077422833948774,0.03280027749248735
+fm-scgpt,fm:virtues,all,he->he (image only),CD45,0.4255752946139939,0.018601558417727353
+fm-scgpt,fm:virtues,all,he->he (image only),Pan-CK,0.7600837656028384,-0.02409287973271913
+fm-scgpt,fm:virtues,all,he->he (image only),E-cadherin,0.7907622582211538,-0.02616662067961269
+fm-scgpt,fm:virtues,all,he->he (image only),SMA,0.5496677090074895,0.008031666826108216
+fm-scgpt,fm:virtues,all,he->he (image only),Ki67,0.5640239507027948,0.016178080430075625
+fm-scgpt,fm:virtues,all,he->he (image only),CD31,0.20356979497859404,0.014983085916608088
+fm-scgpt,fm:virtues,all,he->he (image only),CD68,0.241017994530169,-0.03906845273011831
+fm-scgpt,fm:virtues,all,he->he (image only),CD163,0.2634517447108535,-0.02031504332217536
+fm-scgpt,fm:virtues,all,he->he (image only),CD3e,0.3998173607800469,-0.016887975053143805
+fm-scgpt,fm:virtues,all,he->he (image only),CD4,0.21561714158411877,-0.023017630535475012
+fm-scgpt,fm:virtues,all,he->he (image only),CD8a,0.24949743397681826,-0.02297505897219791
+fm-scgpt,fm:virtues,all,he->he (image only),FOXP3,0.28320389278696795,0.005918311985630659
+fm-scgpt,fm:virtues,all,he->he (image only),CD20,0.23442593094928735,-0.03840353682697575
+fm-scgpt,fm:virtues,all,he->he (image only),PD-L1,0.08058704627079431,-0.03302285292565125
+fm-scgpt,fm:virtues,all,he->he (image only),PD-1,0.15594101513575218,-0.004101193193183054
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD45,0.21072607300734036,-0.0052136842102671384
+fm-scgpt,fm:virtues,all,gene->protein (emergent),Pan-CK,0.42477594721903267,0.0023601982623140585
+fm-scgpt,fm:virtues,all,gene->protein (emergent),E-cadherin,0.4150601263833988,0.005209778407233833
+fm-scgpt,fm:virtues,all,gene->protein (emergent),SMA,0.30168945729423813,0.00012677332438710458
+fm-scgpt,fm:virtues,all,gene->protein (emergent),Ki67,0.3523658994818446,-0.003308132258379931
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD31,0.1277226691495737,0.008235138997894381
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD68,0.19890523101277227,0.014169236968330797
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD163,0.11754058807284117,0.005025255780766896
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD3e,0.15734250027871788,-0.020322104294443918
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD4,0.11276107986353051,-0.01873251989146025
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD8a,0.09560633600640478,0.0002102595118882741
+fm-scgpt,fm:virtues,all,gene->protein (emergent),FOXP3,0.11123495782745511,-0.009263231493736476
+fm-scgpt,fm:virtues,all,gene->protein (emergent),CD20,0.15241111623395134,0.005399443089300121
+fm-scgpt,fm:virtues,all,gene->protein (emergent),PD-L1,0.04853267400037575,0.007706052564729994
+fm-scgpt,fm:virtues,all,gene->protein (emergent),PD-1,0.04420867612170773,-0.00038630444124040773
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD45,0.18637876040241746,0.012705118729180124
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),Pan-CK,0.4628977243877319,0.006235593614770067
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),E-cadherin,0.4667371160744722,0.019254821381351872
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),SMA,0.30697045377802573,-0.013897115508522337
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),Ki67,0.3957901381917497,-0.02117771511384195
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD31,0.10999199444270583,-0.004034271896220992
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD68,0.17294103874770556,0.009181452558447281
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD163,0.11131299519496124,0.0009494249812819365
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD3e,0.10972915897362388,-0.0013987366207286215
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD4,0.0865861774019962,0.010974349273358972
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD8a,0.08306661459125808,-0.00025986321108088177
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),FOXP3,0.07871519677907281,-0.02377980562110079
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),CD20,0.1359304976345833,0.008115791435155293
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),PD-L1,0.07269881107326431,0.005016463976882308
+fm-scgpt,fm:virtues,all,gene->he (cross-dataset),PD-1,0.04817242340862219,-0.01323035464781489
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD45,0.4855869285591956,0.012483584845430168
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),Pan-CK,0.7971774153893304,-0.02288419990887157
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),E-cadherin,0.7798195001042874,-0.02159747038416822
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),SMA,0.6176311744656569,-0.022544853368274137
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),Ki67,0.6127420621601392,-0.015114870037165612
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD31,0.18275874710060477,-0.0012785858891681578
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD68,0.28134778055427656,-0.013671068715144084
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD163,0.214324627224338,-0.008537606788280753
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD3e,0.36693811146805483,0.005550237214398785
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD4,0.1946020557199232,-0.020071889897524692
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD8a,0.2776804136277033,-0.025807762745026025
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),FOXP3,0.16694921649604727,-0.004095111861762855
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),CD20,0.28093264516612065,-0.011139585451562142
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),PD-L1,0.14312018515873162,-0.005293538428225697
+fm-scgpt,convnext_tiny,bowel,protein->gene (emergent),PD-1,0.18456559458600444,-0.0035323595860092863
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD45,0.43484759051413974,-0.004942963579996572
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),Pan-CK,0.8014865302143956,-0.010006705462933167
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),E-cadherin,0.7969743894867296,-0.0296565963905731
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),SMA,0.5468049127993015,-0.04308949945433011
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),Ki67,0.5982699569688729,0.025986395203912226
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD31,0.19473013688140886,-0.002819040744688357
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD68,0.31142308315920764,-0.0008187319967642233
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD163,0.26914197087643166,0.036502869511283245
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD3e,0.3202493657746021,0.02523812419231575
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD4,0.21539999053000733,0.011362000433066805
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD8a,0.2314485125023304,-0.010385429058802681
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),FOXP3,0.11986014349021648,0.012870944729988058
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),CD20,0.2415164976056164,0.009676140057181036
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),PD-L1,0.09527367628115652,-0.02431255677974141
+fm-scgpt,convnext_tiny,bowel,he->gene (cross-dataset),PD-1,0.04350565944459181,0.0033300163131245067
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD45,0.35196040288465463,-0.010797051494441927
+fm-scgpt,convnext_tiny,bowel,he->he (image only),Pan-CK,0.805909934315864,-0.00929949213997455
+fm-scgpt,convnext_tiny,bowel,he->he (image only),E-cadherin,0.7667145798044203,0.02598916469550388
+fm-scgpt,convnext_tiny,bowel,he->he (image only),SMA,0.49286081803104537,0.00285872828031185
+fm-scgpt,convnext_tiny,bowel,he->he (image only),Ki67,0.4862155022101873,-0.007719724405633142
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD31,0.2609651222218864,0.004152251158814232
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD68,0.20732952860582934,0.006479554858190343
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD163,0.3088383384951972,-0.019087435268971418
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD3e,0.31995175412480964,-0.01571576682590808
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD4,0.09465220203240068,0.016623618564942825
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD8a,0.3058622790888477,-0.006106293361571494
+fm-scgpt,convnext_tiny,bowel,he->he (image only),FOXP3,0.3621489701351152,-0.019239471543334892
+fm-scgpt,convnext_tiny,bowel,he->he (image only),CD20,0.09916615485881275,-0.016029333688656684
+fm-scgpt,convnext_tiny,bowel,he->he (image only),PD-L1,0.059243469484217305,-0.0036235737331472254
+fm-scgpt,convnext_tiny,bowel,he->he (image only),PD-1,0.05119377368653607,0.01019122471691325
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD45,0.20066500917204083,-0.005437043730302985
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),Pan-CK,0.690734327504837,-0.01421601036451217
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),E-cadherin,0.6509308655637728,-0.016622777272994483
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),SMA,0.5268258792317634,-0.009176725200375562
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),Ki67,0.4120956058055001,-0.0009191733825392362
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD31,0.04520662000080715,0.031552427487052205
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD68,0.1619583288702471,0.045817397633282866
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD163,0.06717061122235148,-0.011133686067383151
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD3e,0.10337921694504203,-0.008428462129950886
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD4,-0.01265904866132904,0.0018352958961161414
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD8a,0.05908593838661278,-0.05044404682280689
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),FOXP3,0.07156891704402929,0.023888915866796416
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),CD20,0.029265256045918543,-0.014223457739320565
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),PD-L1,0.08564430067898206,0.03683446671552151
+fm-scgpt,convnext_tiny,bowel,gene->protein (emergent),PD-1,-0.005178559958197425,-0.04145938510011337
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD45,0.18450858517607174,0.03541285292322421
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),Pan-CK,0.6680938695606606,0.006829174848236295
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),E-cadherin,0.6355557033987311,-0.0009460925691722513
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),SMA,0.5577669855974277,0.00960262574678461
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),Ki67,0.41015047047076153,-0.0015388813920888791
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD31,0.14557002780787748,-0.008570447920913807
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD68,0.16595396855563346,0.011453712029392346
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD163,0.13757618498637167,-0.016883655483726633
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD3e,0.08385964618468711,0.003887406440136687
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD4,-0.0023108530732877156,0.003396427505373542
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),CD8a,0.05903290288456525,-0.004660693055641359
+fm-scgpt,convnext_tiny,bowel,gene->he (cross-dataset),FOXP3,0.07487409875628935,0.05596554314035594
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+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD45,0.5018790837574367,-0.025670065195168092
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),Pan-CK,0.814076761114251,0.02225155745593977
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),E-cadherin,0.8030665121293614,-0.016471275728177796
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),SMA,0.6475035240836479,-0.009304288205015004
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),Ki67,0.6265799684477571,-0.022323167799291166
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD31,0.19564904776686787,-0.012762742367609737
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD68,0.312259688307344,0.012931773978440721
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD163,0.228600670664354,-0.04118821187536032
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD3e,0.37021476599158115,0.0014036130673289492
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD4,0.24498260040117964,-0.010427498086732576
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD8a,0.3096005208409493,-0.005073824951605615
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),FOXP3,0.210397800446622,4.6253095695211554e-05
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),CD20,0.29504733190694327,-0.007991949415385413
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),PD-L1,0.13439032366755535,-0.021386457273833218
+fm-scgpt,fm:virtues,bowel,protein->gene (emergent),PD-1,0.18029259420448168,0.021683088873007548
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD45,0.43484759051413974,-0.011265177100570189
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),Pan-CK,0.8014865302143956,-0.011346349609092286
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),E-cadherin,0.7969743894867296,0.015836551317439527
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),SMA,0.5468049127993015,0.005733646282617322
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),Ki67,0.5982699569688729,0.017473351005546596
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD31,0.19473013688140886,0.03575972406807928
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD68,0.31142308315920764,0.035851447396045615
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD163,0.26914197087643166,0.031163805603094827
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD3e,0.3202493657746021,0.005659307584757496
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD4,0.21539999053000733,0.0053077315111768105
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),CD8a,0.2314485125023304,0.013801473378932158
+fm-scgpt,fm:virtues,bowel,he->gene (cross-dataset),FOXP3,0.11986014349021648,-0.016893045540399155
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@@ -0,0 +1,961 @@
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results/gene_retrieval_fm.csv

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results/gene_retrieval_mlp.csv

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results/gigatime_diag.csv

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