Transformers
English
biology
single-cell
scRNA-seq
macrophage
IBD
inflammatory-bowel-disease
perturbation
gene-knockout
scGPT
Instructions to use Pathwit/MacroPert with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use Pathwit/MacroPert with Transformers:
# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("Pathwit/MacroPert", dtype="auto") - Notebooks
- Google Colab
- Kaggle
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datasets:
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- GEO:GSE134809
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- GEO:GSE116222
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- GEO:GSE182270
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- GEO:GSE148810
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metrics:
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- pearsonr
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- roc_auc
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- gene-knockout
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- scGPT
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- transformers
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metrics:
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- pearsonr
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- roc_auc
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