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- # RAMER
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- This Hugging Face repository stores the official resources for **RAMER** (reaction-aware multimodal enzyme function representation model).
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- ## What is stored in this repository
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- The repository mainly includes three resource groups:
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- - `model/`
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- Model weights and tokenizer/config files required for RAMER inference and training reproduction.
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- - `data/`
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- Benchmark and evaluation data (for example, test CSV/JSON files and related resources used in EC prediction workflows).
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- - `Background_library/`
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- Background embedding/index resources and dictionary files used by zero-shot retrieval pipelines (e.g., EC label dictionaries and background H5 files).
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- ## Intended usage
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- These files are intended for:
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- - Zero-shot EC function prediction (`top1` and `max-separation`)
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- - Enzyme/non-enzyme binary classification based on RAMER embeddings
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- - Training/inference reproduction using the released scripts
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- ## Deployment / pipeline reference
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- For end-to-end scripts, deployment examples, and pipeline details, please refer to the GitHub organization:
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- - [Ming-Ni-Group on GitHub](https://github.com/Ming-Ni-Group)
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- And the project repository:
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- - [Ming-Ni-Group/RAMER](https://github.com/Ming-Ni-Group/RAMER.git)
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- ## Notes
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- - This repository is primarily a resource host (weights + data + background library).
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- - Runtime scripts and workflow orchestration are maintained in the GitHub code repository.