{ "repo_id": "PoorOtterBob/AutOmicScience-FoundationModels", "repo_type": "model", "generated_at": "2026-05-26T01:58:55.292Z", "sha256_included": false, "total_files": 57, "total_bytes": 47644672174, "missing_source_roots": [], "files": [ { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "geneformer/Geneformer_code_only/config.json", "bytes": 591 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "geneformer/Geneformer_code_only/geneformer/gene_median_dictionary_gc104M.pkl", "bytes": 1512661 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "geneformer/Geneformer_code_only/geneformer/gene_name_id_dict_gc104M.pkl", "bytes": 1660882 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "geneformer/Geneformer_code_only/geneformer/token_dictionary_gc104M.pkl", "bytes": 425590 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "geneformer/model.safetensors", "bytes": 1265455076 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_EAE/checkpoints/uce_freeze_mouse_s3028/best_model.pth", "bytes": 3456528659 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_EAE/checkpoints/uce_freeze_mouse_s3028/test_features.npz", "bytes": 257050497 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_EAE/checkpoints/uce_full_mouse_s3028/best_model.pth", "bytes": 3456528659 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_EAE/checkpoints/uce_full_mouse_s3028/test_features.npz", "bytes": 257118885 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/geneformer_freeze_s3028/best_model.pth", "bytes": 1303103393 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/geneformer_freeze_s3028/test_features.npz", "bytes": 1064481204 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/geneformer_full_s3028/best_model.pth", "bytes": 1303103393 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/geneformer_full_s3028/test_features.npz", "bytes": 1062018138 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/scgpt_freeze_human_s3028/best_model.pth", "bytes": 214014819 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/scgpt_freeze_human_s3028/test_features.npz", "bytes": 473874197 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/scgpt_full_human_s3028/best_model.pth", "bytes": 214014819 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/scgpt_full_human_s3028/test_features.npz", "bytes": 473893370 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/uce_freeze_human_s3028/best_model.pth", "bytes": 3456483283 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/uce_freeze_human_s3028/test_features.npz", "bytes": 1183205697 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/uce_full_human_s3028/best_model.pth", "bytes": 3456483283 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/Kukanja_MS/checkpoints/uce_full_human_s3028/test_features.npz", "bytes": 1183526804 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "kukanja_finetuned/main_nicheformer.py", "bytes": 4092 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "nicheformer/gene_name_id_dict_gc104M.pkl", "bytes": 1660882 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "nicheformer/merfish_mean_script.npy", "bytes": 162608 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "nicheformer/model.h5ad", "bytes": 1066912 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "nicheformer/nicheformer.ckpt", "bytes": 572217913 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scANVI/SEA_AD_MTP_ST/checkpoints/s3028/scanvi_class/model.pt", "bytes": 28855255 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scgpt/brain/args.json", "bytes": 1043 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scgpt/brain/best_model.pt", "bytes": 205385258 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scgpt/brain/vocab.json", "bytes": 1317639 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scgpt/human/args.json", "bytes": 1300 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scgpt/human/best_model.pt", "bytes": 205385258 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "scgpt/human/vocab.json", "bytes": 1317639 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/lr/SEA_AD_MTP_ST/checkpoints/class_model.pkl", "bytes": 4271 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/lr/SEA_AD_MTP_ST/checkpoints/subclass_model.pkl", "bytes": 28119 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/lr/SEA_AD_MTP_ST/checkpoints/supertype_model.pkl", "bytes": 156495 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/svm/SEA_AD_MTP_ST/checkpoints/class_model.pkl", "bytes": 13243 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/svm/SEA_AD_MTP_ST/checkpoints/subclass_model.pkl", "bytes": 88995 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/svm/SEA_AD_MTP_ST/checkpoints/supertype_model.pkl", "bytes": 496715 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/xgboost/SEA_AD_MTP_ST/checkpoints/class_model.pkl", "bytes": 4414218 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/xgboost/SEA_AD_MTP_ST/checkpoints/subclass_model.pkl", "bytes": 33810521 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "sklearn_baselines/xgboost/SEA_AD_MTP_ST/checkpoints/supertype_model.pkl", "bytes": 160796181 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "spatial_gnn/SEA_AD_MTP_ST/checkpoints/k15_gcn2_h256_z128_s3028/best_model.pth", "bytes": 1378101 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "spatial_gnn/SEA_AD_MTP_ST/checkpoints/k15_gcn2_h256_z128_s3028/test_features.npz", "bytes": 196098571 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_33l/33l_8ep_1024t_1280.torch", "bytes": 2985072640 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_33l/4layer_model.torch", "bytes": 3403514339 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_33l/all_tokens.torch", "bytes": 2979205876 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_33l/species_chrom.csv", "bytes": 4097781 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_33l/species_offsets.pkl", "bytes": 139 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_4l/4layer_model.torch", "bytes": 3403514339 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_4l/all_tokens.torch", "bytes": 2979205876 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_4l/species_chrom.csv", "bytes": 4097781 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce_4l/species_offsets.pkl", "bytes": 139 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce/4layer_model.torch", "bytes": 3403514339 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce/all_tokens.torch", "bytes": 2979205876 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce/species_chrom.csv", "bytes": 4097781 }, { "source_root": "src/bridge/runtime/checkpoints/foundation_models", "path_in_repo": "uce/species_offsets.pkl", "bytes": 139 } ] }