Upload edit\Qwen3-TTS-test\.venv\Lib\site-packages\sklearn\decomposition\tests\test_online_lda.py with huggingface_hub
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edit//Qwen3-TTS-test//.venv//Lib//site-packages//sklearn//decomposition//tests//test_online_lda.py
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| 1 |
+
import sys
|
| 2 |
+
from io import StringIO
|
| 3 |
+
|
| 4 |
+
import numpy as np
|
| 5 |
+
import pytest
|
| 6 |
+
from numpy.testing import assert_array_equal
|
| 7 |
+
from scipy.linalg import block_diag
|
| 8 |
+
from scipy.special import psi
|
| 9 |
+
|
| 10 |
+
from sklearn.decomposition import LatentDirichletAllocation
|
| 11 |
+
from sklearn.decomposition._online_lda_fast import (
|
| 12 |
+
_dirichlet_expectation_1d,
|
| 13 |
+
_dirichlet_expectation_2d,
|
| 14 |
+
)
|
| 15 |
+
from sklearn.exceptions import NotFittedError
|
| 16 |
+
from sklearn.utils._testing import (
|
| 17 |
+
assert_allclose,
|
| 18 |
+
assert_almost_equal,
|
| 19 |
+
assert_array_almost_equal,
|
| 20 |
+
if_safe_multiprocessing_with_blas,
|
| 21 |
+
)
|
| 22 |
+
from sklearn.utils.fixes import CSR_CONTAINERS
|
| 23 |
+
|
| 24 |
+
|
| 25 |
+
def _build_sparse_array(csr_container):
|
| 26 |
+
# Create 3 topics and each topic has 3 distinct words.
|
| 27 |
+
# (Each word only belongs to a single topic.)
|
| 28 |
+
n_components = 3
|
| 29 |
+
block = np.full((3, 3), n_components, dtype=int)
|
| 30 |
+
blocks = [block] * n_components
|
| 31 |
+
X = block_diag(*blocks)
|
| 32 |
+
X = csr_container(X)
|
| 33 |
+
return (n_components, X)
|
| 34 |
+
|
| 35 |
+
|
| 36 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 37 |
+
def test_lda_default_prior_params(csr_container):
|
| 38 |
+
# default prior parameter should be `1 / topics`
|
| 39 |
+
# and verbose params should not affect result
|
| 40 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 41 |
+
prior = 1.0 / n_components
|
| 42 |
+
lda_1 = LatentDirichletAllocation(
|
| 43 |
+
n_components=n_components,
|
| 44 |
+
doc_topic_prior=prior,
|
| 45 |
+
topic_word_prior=prior,
|
| 46 |
+
random_state=0,
|
| 47 |
+
)
|
| 48 |
+
lda_2 = LatentDirichletAllocation(n_components=n_components, random_state=0)
|
| 49 |
+
topic_distr_1 = lda_1.fit_transform(X)
|
| 50 |
+
topic_distr_2 = lda_2.fit_transform(X)
|
| 51 |
+
assert_almost_equal(topic_distr_1, topic_distr_2)
|
| 52 |
+
|
| 53 |
+
|
| 54 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 55 |
+
def test_lda_fit_batch(csr_container):
|
| 56 |
+
# Test LDA batch learning_offset (`fit` method with 'batch' learning)
|
| 57 |
+
rng = np.random.RandomState(0)
|
| 58 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 59 |
+
lda = LatentDirichletAllocation(
|
| 60 |
+
n_components=n_components,
|
| 61 |
+
evaluate_every=1,
|
| 62 |
+
learning_method="batch",
|
| 63 |
+
random_state=rng,
|
| 64 |
+
)
|
| 65 |
+
lda.fit(X)
|
| 66 |
+
|
| 67 |
+
correct_idx_grps = [(0, 1, 2), (3, 4, 5), (6, 7, 8)]
|
| 68 |
+
for component in lda.components_:
|
| 69 |
+
# Find top 3 words in each LDA component
|
| 70 |
+
top_idx = set(component.argsort()[-3:][::-1])
|
| 71 |
+
assert tuple(sorted(top_idx)) in correct_idx_grps
|
| 72 |
+
|
| 73 |
+
|
| 74 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 75 |
+
def test_lda_fit_online(csr_container):
|
| 76 |
+
# Test LDA online learning (`fit` method with 'online' learning)
|
| 77 |
+
rng = np.random.RandomState(0)
|
| 78 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 79 |
+
lda = LatentDirichletAllocation(
|
| 80 |
+
n_components=n_components,
|
| 81 |
+
learning_offset=10.0,
|
| 82 |
+
evaluate_every=1,
|
| 83 |
+
learning_method="online",
|
| 84 |
+
random_state=rng,
|
| 85 |
+
)
|
| 86 |
+
lda.fit(X)
|
| 87 |
+
|
| 88 |
+
correct_idx_grps = [(0, 1, 2), (3, 4, 5), (6, 7, 8)]
|
| 89 |
+
for component in lda.components_:
|
| 90 |
+
# Find top 3 words in each LDA component
|
| 91 |
+
top_idx = set(component.argsort()[-3:][::-1])
|
| 92 |
+
assert tuple(sorted(top_idx)) in correct_idx_grps
|
| 93 |
+
|
| 94 |
+
|
| 95 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 96 |
+
def test_lda_partial_fit(csr_container):
|
| 97 |
+
# Test LDA online learning (`partial_fit` method)
|
| 98 |
+
# (same as test_lda_batch)
|
| 99 |
+
rng = np.random.RandomState(0)
|
| 100 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 101 |
+
lda = LatentDirichletAllocation(
|
| 102 |
+
n_components=n_components,
|
| 103 |
+
learning_offset=10.0,
|
| 104 |
+
total_samples=100,
|
| 105 |
+
random_state=rng,
|
| 106 |
+
)
|
| 107 |
+
for i in range(3):
|
| 108 |
+
lda.partial_fit(X)
|
| 109 |
+
|
| 110 |
+
correct_idx_grps = [(0, 1, 2), (3, 4, 5), (6, 7, 8)]
|
| 111 |
+
for c in lda.components_:
|
| 112 |
+
top_idx = set(c.argsort()[-3:][::-1])
|
| 113 |
+
assert tuple(sorted(top_idx)) in correct_idx_grps
|
| 114 |
+
|
| 115 |
+
|
| 116 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 117 |
+
def test_lda_dense_input(csr_container):
|
| 118 |
+
# Test LDA with dense input.
|
| 119 |
+
rng = np.random.RandomState(0)
|
| 120 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 121 |
+
lda = LatentDirichletAllocation(
|
| 122 |
+
n_components=n_components, learning_method="batch", random_state=rng
|
| 123 |
+
)
|
| 124 |
+
lda.fit(X.toarray())
|
| 125 |
+
|
| 126 |
+
correct_idx_grps = [(0, 1, 2), (3, 4, 5), (6, 7, 8)]
|
| 127 |
+
for component in lda.components_:
|
| 128 |
+
# Find top 3 words in each LDA component
|
| 129 |
+
top_idx = set(component.argsort()[-3:][::-1])
|
| 130 |
+
assert tuple(sorted(top_idx)) in correct_idx_grps
|
| 131 |
+
|
| 132 |
+
|
| 133 |
+
def test_lda_transform():
|
| 134 |
+
# Test LDA transform.
|
| 135 |
+
# Transform result cannot be negative and should be normalized by default
|
| 136 |
+
rng = np.random.RandomState(0)
|
| 137 |
+
X = rng.randint(5, size=(20, 10))
|
| 138 |
+
n_components = 3
|
| 139 |
+
lda = LatentDirichletAllocation(n_components=n_components, random_state=rng)
|
| 140 |
+
X_trans = lda.fit_transform(X)
|
| 141 |
+
assert (X_trans > 0.0).any()
|
| 142 |
+
assert_array_almost_equal(np.sum(X_trans, axis=1), np.ones(X_trans.shape[0]))
|
| 143 |
+
|
| 144 |
+
X_trans_unnormalized = lda.transform(X, normalize=False)
|
| 145 |
+
assert_array_almost_equal(
|
| 146 |
+
X_trans, X_trans_unnormalized / X_trans_unnormalized.sum(axis=1)[:, np.newaxis]
|
| 147 |
+
)
|
| 148 |
+
|
| 149 |
+
|
| 150 |
+
@pytest.mark.parametrize("method", ("online", "batch"))
|
| 151 |
+
def test_lda_fit_transform(method):
|
| 152 |
+
# Test LDA fit_transform & transform
|
| 153 |
+
# fit_transform and transform result should be the same
|
| 154 |
+
rng = np.random.RandomState(0)
|
| 155 |
+
X = rng.randint(10, size=(50, 20))
|
| 156 |
+
lda = LatentDirichletAllocation(
|
| 157 |
+
n_components=5, learning_method=method, random_state=rng
|
| 158 |
+
)
|
| 159 |
+
X_fit = lda.fit_transform(X)
|
| 160 |
+
X_trans = lda.transform(X)
|
| 161 |
+
assert_array_almost_equal(X_fit, X_trans, 4)
|
| 162 |
+
|
| 163 |
+
|
| 164 |
+
def test_lda_negative_input():
|
| 165 |
+
# test pass dense matrix with sparse negative input.
|
| 166 |
+
X = np.full((5, 10), -1.0)
|
| 167 |
+
lda = LatentDirichletAllocation()
|
| 168 |
+
regex = r"^Negative values in data passed"
|
| 169 |
+
with pytest.raises(ValueError, match=regex):
|
| 170 |
+
lda.fit(X)
|
| 171 |
+
|
| 172 |
+
|
| 173 |
+
def test_lda_no_component_error():
|
| 174 |
+
# test `perplexity` before `fit`
|
| 175 |
+
rng = np.random.RandomState(0)
|
| 176 |
+
X = rng.randint(4, size=(20, 10))
|
| 177 |
+
lda = LatentDirichletAllocation()
|
| 178 |
+
regex = (
|
| 179 |
+
"This LatentDirichletAllocation instance is not fitted yet. "
|
| 180 |
+
"Call 'fit' with appropriate arguments before using this "
|
| 181 |
+
"estimator."
|
| 182 |
+
)
|
| 183 |
+
with pytest.raises(NotFittedError, match=regex):
|
| 184 |
+
lda.perplexity(X)
|
| 185 |
+
|
| 186 |
+
|
| 187 |
+
# TODO: remove mark once loky bug is fixed:
|
| 188 |
+
# https://github.com/joblib/loky/issues/458
|
| 189 |
+
@pytest.mark.thread_unsafe
|
| 190 |
+
@if_safe_multiprocessing_with_blas
|
| 191 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 192 |
+
@pytest.mark.parametrize("method", ("online", "batch"))
|
| 193 |
+
def test_lda_multi_jobs(method, csr_container):
|
| 194 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 195 |
+
# Test LDA batch training with multi CPU
|
| 196 |
+
rng = np.random.RandomState(0)
|
| 197 |
+
lda = LatentDirichletAllocation(
|
| 198 |
+
n_components=n_components,
|
| 199 |
+
n_jobs=2,
|
| 200 |
+
learning_method=method,
|
| 201 |
+
evaluate_every=1,
|
| 202 |
+
random_state=rng,
|
| 203 |
+
)
|
| 204 |
+
lda.fit(X)
|
| 205 |
+
|
| 206 |
+
correct_idx_grps = [(0, 1, 2), (3, 4, 5), (6, 7, 8)]
|
| 207 |
+
for c in lda.components_:
|
| 208 |
+
top_idx = set(c.argsort()[-3:][::-1])
|
| 209 |
+
assert tuple(sorted(top_idx)) in correct_idx_grps
|
| 210 |
+
|
| 211 |
+
|
| 212 |
+
# TODO: remove mark once loky bug is fixed:
|
| 213 |
+
# https://github.com/joblib/loky/issues/458
|
| 214 |
+
@pytest.mark.thread_unsafe
|
| 215 |
+
@if_safe_multiprocessing_with_blas
|
| 216 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 217 |
+
def test_lda_partial_fit_multi_jobs(csr_container):
|
| 218 |
+
# Test LDA online training with multi CPU
|
| 219 |
+
rng = np.random.RandomState(0)
|
| 220 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 221 |
+
lda = LatentDirichletAllocation(
|
| 222 |
+
n_components=n_components,
|
| 223 |
+
n_jobs=2,
|
| 224 |
+
learning_offset=5.0,
|
| 225 |
+
total_samples=30,
|
| 226 |
+
random_state=rng,
|
| 227 |
+
)
|
| 228 |
+
for i in range(2):
|
| 229 |
+
lda.partial_fit(X)
|
| 230 |
+
|
| 231 |
+
correct_idx_grps = [(0, 1, 2), (3, 4, 5), (6, 7, 8)]
|
| 232 |
+
for c in lda.components_:
|
| 233 |
+
top_idx = set(c.argsort()[-3:][::-1])
|
| 234 |
+
assert tuple(sorted(top_idx)) in correct_idx_grps
|
| 235 |
+
|
| 236 |
+
|
| 237 |
+
def test_lda_preplexity_mismatch():
|
| 238 |
+
# test dimension mismatch in `perplexity` method
|
| 239 |
+
rng = np.random.RandomState(0)
|
| 240 |
+
n_components = rng.randint(3, 6)
|
| 241 |
+
n_samples = rng.randint(6, 10)
|
| 242 |
+
X = np.random.randint(4, size=(n_samples, 10))
|
| 243 |
+
lda = LatentDirichletAllocation(
|
| 244 |
+
n_components=n_components,
|
| 245 |
+
learning_offset=5.0,
|
| 246 |
+
total_samples=20,
|
| 247 |
+
random_state=rng,
|
| 248 |
+
)
|
| 249 |
+
lda.fit(X)
|
| 250 |
+
# invalid samples
|
| 251 |
+
invalid_n_samples = rng.randint(4, size=(n_samples + 1, n_components))
|
| 252 |
+
with pytest.raises(ValueError, match=r"Number of samples"):
|
| 253 |
+
lda._perplexity_precomp_distr(X, invalid_n_samples)
|
| 254 |
+
# invalid topic number
|
| 255 |
+
invalid_n_components = rng.randint(4, size=(n_samples, n_components + 1))
|
| 256 |
+
with pytest.raises(ValueError, match=r"Number of topics"):
|
| 257 |
+
lda._perplexity_precomp_distr(X, invalid_n_components)
|
| 258 |
+
|
| 259 |
+
|
| 260 |
+
@pytest.mark.parametrize("method", ("online", "batch"))
|
| 261 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 262 |
+
def test_lda_perplexity(method, csr_container):
|
| 263 |
+
# Test LDA perplexity for batch training
|
| 264 |
+
# perplexity should be lower after each iteration
|
| 265 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 266 |
+
lda_1 = LatentDirichletAllocation(
|
| 267 |
+
n_components=n_components,
|
| 268 |
+
max_iter=1,
|
| 269 |
+
learning_method=method,
|
| 270 |
+
total_samples=100,
|
| 271 |
+
random_state=0,
|
| 272 |
+
)
|
| 273 |
+
lda_2 = LatentDirichletAllocation(
|
| 274 |
+
n_components=n_components,
|
| 275 |
+
max_iter=10,
|
| 276 |
+
learning_method=method,
|
| 277 |
+
total_samples=100,
|
| 278 |
+
random_state=0,
|
| 279 |
+
)
|
| 280 |
+
lda_1.fit(X)
|
| 281 |
+
perp_1 = lda_1.perplexity(X, sub_sampling=False)
|
| 282 |
+
|
| 283 |
+
lda_2.fit(X)
|
| 284 |
+
perp_2 = lda_2.perplexity(X, sub_sampling=False)
|
| 285 |
+
assert perp_1 >= perp_2
|
| 286 |
+
|
| 287 |
+
perp_1_subsampling = lda_1.perplexity(X, sub_sampling=True)
|
| 288 |
+
perp_2_subsampling = lda_2.perplexity(X, sub_sampling=True)
|
| 289 |
+
assert perp_1_subsampling >= perp_2_subsampling
|
| 290 |
+
|
| 291 |
+
|
| 292 |
+
@pytest.mark.parametrize("method", ("online", "batch"))
|
| 293 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 294 |
+
def test_lda_score(method, csr_container):
|
| 295 |
+
# Test LDA score for batch training
|
| 296 |
+
# score should be higher after each iteration
|
| 297 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 298 |
+
lda_1 = LatentDirichletAllocation(
|
| 299 |
+
n_components=n_components,
|
| 300 |
+
max_iter=1,
|
| 301 |
+
learning_method=method,
|
| 302 |
+
total_samples=100,
|
| 303 |
+
random_state=0,
|
| 304 |
+
)
|
| 305 |
+
lda_2 = LatentDirichletAllocation(
|
| 306 |
+
n_components=n_components,
|
| 307 |
+
max_iter=10,
|
| 308 |
+
learning_method=method,
|
| 309 |
+
total_samples=100,
|
| 310 |
+
random_state=0,
|
| 311 |
+
)
|
| 312 |
+
lda_1.fit_transform(X)
|
| 313 |
+
score_1 = lda_1.score(X)
|
| 314 |
+
|
| 315 |
+
lda_2.fit_transform(X)
|
| 316 |
+
score_2 = lda_2.score(X)
|
| 317 |
+
assert score_2 >= score_1
|
| 318 |
+
|
| 319 |
+
|
| 320 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 321 |
+
def test_perplexity_input_format(csr_container):
|
| 322 |
+
# Test LDA perplexity for sparse and dense input
|
| 323 |
+
# score should be the same for both dense and sparse input
|
| 324 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 325 |
+
lda = LatentDirichletAllocation(
|
| 326 |
+
n_components=n_components,
|
| 327 |
+
max_iter=1,
|
| 328 |
+
learning_method="batch",
|
| 329 |
+
total_samples=100,
|
| 330 |
+
random_state=0,
|
| 331 |
+
)
|
| 332 |
+
lda.fit(X)
|
| 333 |
+
perp_1 = lda.perplexity(X)
|
| 334 |
+
perp_2 = lda.perplexity(X.toarray())
|
| 335 |
+
assert_almost_equal(perp_1, perp_2)
|
| 336 |
+
|
| 337 |
+
|
| 338 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 339 |
+
def test_lda_score_perplexity(csr_container):
|
| 340 |
+
# Test the relationship between LDA score and perplexity
|
| 341 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 342 |
+
lda = LatentDirichletAllocation(
|
| 343 |
+
n_components=n_components, max_iter=10, random_state=0
|
| 344 |
+
)
|
| 345 |
+
lda.fit(X)
|
| 346 |
+
perplexity_1 = lda.perplexity(X, sub_sampling=False)
|
| 347 |
+
|
| 348 |
+
score = lda.score(X)
|
| 349 |
+
perplexity_2 = np.exp(-1.0 * (score / np.sum(X.data)))
|
| 350 |
+
assert_almost_equal(perplexity_1, perplexity_2)
|
| 351 |
+
|
| 352 |
+
|
| 353 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 354 |
+
def test_lda_fit_perplexity(csr_container):
|
| 355 |
+
# Test that the perplexity computed during fit is consistent with what is
|
| 356 |
+
# returned by the perplexity method
|
| 357 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 358 |
+
lda = LatentDirichletAllocation(
|
| 359 |
+
n_components=n_components,
|
| 360 |
+
max_iter=1,
|
| 361 |
+
learning_method="batch",
|
| 362 |
+
random_state=0,
|
| 363 |
+
evaluate_every=1,
|
| 364 |
+
)
|
| 365 |
+
lda.fit(X)
|
| 366 |
+
|
| 367 |
+
# Perplexity computed at end of fit method
|
| 368 |
+
perplexity1 = lda.bound_
|
| 369 |
+
|
| 370 |
+
# Result of perplexity method on the train set
|
| 371 |
+
perplexity2 = lda.perplexity(X)
|
| 372 |
+
|
| 373 |
+
assert_almost_equal(perplexity1, perplexity2)
|
| 374 |
+
|
| 375 |
+
|
| 376 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 377 |
+
def test_lda_empty_docs(csr_container):
|
| 378 |
+
"""Test LDA on empty document (all-zero rows)."""
|
| 379 |
+
Z = np.zeros((5, 4))
|
| 380 |
+
for X in [Z, csr_container(Z)]:
|
| 381 |
+
lda = LatentDirichletAllocation(max_iter=750).fit(X)
|
| 382 |
+
assert_almost_equal(
|
| 383 |
+
lda.components_.sum(axis=0), np.ones(lda.components_.shape[1])
|
| 384 |
+
)
|
| 385 |
+
|
| 386 |
+
|
| 387 |
+
def test_dirichlet_expectation():
|
| 388 |
+
"""Test Cython version of Dirichlet expectation calculation."""
|
| 389 |
+
x = np.logspace(-100, 10, 10000)
|
| 390 |
+
expectation = np.empty_like(x)
|
| 391 |
+
_dirichlet_expectation_1d(x, 0, expectation)
|
| 392 |
+
assert_allclose(expectation, np.exp(psi(x) - psi(np.sum(x))), atol=1e-19)
|
| 393 |
+
|
| 394 |
+
x = x.reshape(100, 100)
|
| 395 |
+
assert_allclose(
|
| 396 |
+
_dirichlet_expectation_2d(x),
|
| 397 |
+
psi(x) - psi(np.sum(x, axis=1)[:, np.newaxis]),
|
| 398 |
+
rtol=1e-11,
|
| 399 |
+
atol=3e-9,
|
| 400 |
+
)
|
| 401 |
+
|
| 402 |
+
|
| 403 |
+
def check_verbosity(
|
| 404 |
+
verbose, evaluate_every, expected_lines, expected_perplexities, csr_container
|
| 405 |
+
):
|
| 406 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 407 |
+
lda = LatentDirichletAllocation(
|
| 408 |
+
n_components=n_components,
|
| 409 |
+
max_iter=3,
|
| 410 |
+
learning_method="batch",
|
| 411 |
+
verbose=verbose,
|
| 412 |
+
evaluate_every=evaluate_every,
|
| 413 |
+
random_state=0,
|
| 414 |
+
)
|
| 415 |
+
out = StringIO()
|
| 416 |
+
old_out, sys.stdout = sys.stdout, out
|
| 417 |
+
try:
|
| 418 |
+
lda.fit(X)
|
| 419 |
+
finally:
|
| 420 |
+
sys.stdout = old_out
|
| 421 |
+
|
| 422 |
+
n_lines = out.getvalue().count("\n")
|
| 423 |
+
n_perplexity = out.getvalue().count("perplexity")
|
| 424 |
+
assert expected_lines == n_lines
|
| 425 |
+
assert expected_perplexities == n_perplexity
|
| 426 |
+
|
| 427 |
+
|
| 428 |
+
@pytest.mark.parametrize(
|
| 429 |
+
"verbose,evaluate_every,expected_lines,expected_perplexities",
|
| 430 |
+
[
|
| 431 |
+
(False, 1, 0, 0),
|
| 432 |
+
(False, 0, 0, 0),
|
| 433 |
+
(True, 0, 3, 0),
|
| 434 |
+
(True, 1, 3, 3),
|
| 435 |
+
(True, 2, 3, 1),
|
| 436 |
+
],
|
| 437 |
+
)
|
| 438 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 439 |
+
@pytest.mark.thread_unsafe # manually captured stdout
|
| 440 |
+
def test_verbosity(
|
| 441 |
+
verbose, evaluate_every, expected_lines, expected_perplexities, csr_container
|
| 442 |
+
):
|
| 443 |
+
check_verbosity(
|
| 444 |
+
verbose, evaluate_every, expected_lines, expected_perplexities, csr_container
|
| 445 |
+
)
|
| 446 |
+
|
| 447 |
+
|
| 448 |
+
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
|
| 449 |
+
def test_lda_feature_names_out(csr_container):
|
| 450 |
+
"""Check feature names out for LatentDirichletAllocation."""
|
| 451 |
+
n_components, X = _build_sparse_array(csr_container)
|
| 452 |
+
lda = LatentDirichletAllocation(n_components=n_components).fit(X)
|
| 453 |
+
|
| 454 |
+
names = lda.get_feature_names_out()
|
| 455 |
+
assert_array_equal(
|
| 456 |
+
[f"latentdirichletallocation{i}" for i in range(n_components)], names
|
| 457 |
+
)
|
| 458 |
+
|
| 459 |
+
|
| 460 |
+
@pytest.mark.parametrize("learning_method", ("batch", "online"))
|
| 461 |
+
def test_lda_dtype_match(learning_method, global_dtype):
|
| 462 |
+
"""Check data type preservation of fitted attributes."""
|
| 463 |
+
rng = np.random.RandomState(0)
|
| 464 |
+
X = rng.uniform(size=(20, 10)).astype(global_dtype, copy=False)
|
| 465 |
+
|
| 466 |
+
lda = LatentDirichletAllocation(
|
| 467 |
+
n_components=5, random_state=0, learning_method=learning_method
|
| 468 |
+
)
|
| 469 |
+
lda.fit(X)
|
| 470 |
+
assert lda.components_.dtype == global_dtype
|
| 471 |
+
assert lda.exp_dirichlet_component_.dtype == global_dtype
|
| 472 |
+
|
| 473 |
+
|
| 474 |
+
@pytest.mark.parametrize("learning_method", ("batch", "online"))
|
| 475 |
+
def test_lda_numerical_consistency(learning_method, global_random_seed):
|
| 476 |
+
"""Check numerical consistency between np.float32 and np.float64."""
|
| 477 |
+
rng = np.random.RandomState(global_random_seed)
|
| 478 |
+
X64 = rng.uniform(size=(20, 10))
|
| 479 |
+
X32 = X64.astype(np.float32)
|
| 480 |
+
|
| 481 |
+
lda_64 = LatentDirichletAllocation(
|
| 482 |
+
n_components=5, random_state=global_random_seed, learning_method=learning_method
|
| 483 |
+
).fit(X64)
|
| 484 |
+
lda_32 = LatentDirichletAllocation(
|
| 485 |
+
n_components=5, random_state=global_random_seed, learning_method=learning_method
|
| 486 |
+
).fit(X32)
|
| 487 |
+
|
| 488 |
+
assert_allclose(lda_32.components_, lda_64.components_)
|
| 489 |
+
assert_allclose(lda_32.transform(X32), lda_64.transform(X64))
|