DiffICM / 1_feature_extractor /train_decode_proteus_feats.py
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code of stage1 & 3, remove large files
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# Copyright (c) 2015-present, Facebook, Inc.
# All rights reserved.
import argparse
import datetime
import numpy as np
import time
import torch
import torch.backends.cudnn as cudnn
import json
from pathlib import Path
from timm.models import create_model
from timm.loss import LabelSmoothingCrossEntropy, SoftTargetCrossEntropy
from timm.scheduler import create_scheduler
from timm.optim import create_optimizer
from timm.utils import NativeScaler, get_state_dict, ModelEma
from augmentations import collate_data_and_cast_aug
from datasets import build_dataset
from losses_hint import DistillationLoss
from samplers import RASampler
from functools import partial
import importlib
import utils
import random
import math
from multiprocessing import Value
from abc import ABC
import sys
from typing import Iterable, Optional
from timm.data import Mixup
from timm.utils import accuracy, ModelEma
import utils
from torch.utils.tensorboard import SummaryWriter
from torchvision.utils import make_grid
class MaskingGenerator(ABC):
def __init__(self, input_size):
if not isinstance(input_size, tuple):
input_size = (input_size,) * 2
self.height, self.width = input_size
self.num_patches = self.height * self.width
def __repr__(self):
raise NotImplementedError
def get_shape(self):
return self.height, self.width
def _mask(self, mask, max_mask_patches):
raise NotImplementedError
def get_none_mask(self):
return np.zeros(shape=self.get_shape(), dtype=bool)
class RandomMaskingGenerator(MaskingGenerator):
def __init__(
self,
input_size,
):
"""
Args:
input_size: the size of the token map, e.g., 14x14
"""
super().__init__(input_size)
def __repr__(self):
repr_str = f"Random Generator({self.height}, {self.width})"
return repr_str
def _mask(self, mask, max_mask_patches):
return super()._mask(mask, max_mask_patches)
def __call__(self, num_masking_patches=0):
if num_masking_patches <= 0:
return np.zeros(shape=self.get_shape(), dtype=bool)
mask = np.hstack([np.ones(num_masking_patches, dtype=bool),
np.zeros(self.num_patches - num_masking_patches, dtype=bool)])
np.random.shuffle(mask)
mask = mask.reshape(self.get_shape())
return mask
def get_args_parser():
parser = argparse.ArgumentParser('DeiT training and evaluation script', add_help=False)
parser.add_argument('--batch-size', default=64, type=int)
parser.add_argument('--epochs', default=300, type=int)
parser.add_argument('--bce-loss', action='store_true')
parser.add_argument('--unscale-lr', action='store_true')
# Model parameters
parser.add_argument('--model', default='deit_base_patch16_224', type=str)
parser.add_argument('--target_model', default='deit_base_patch16_224', type=str)
parser.add_argument('--input-size', default=224, type=int, help='images input size')
parser.add_argument('--drop', type=float, default=0.0, metavar='PCT',
help='Dropout rate (default: 0.)')
parser.add_argument('--drop-path', type=float, default=0.1, metavar='PCT',
help='Drop path rate (default: 0.1)')
parser.add_argument('--model-ema', action='store_true')
parser.add_argument('--no-model-ema', action='store_false', dest='model_ema')
parser.set_defaults(model_ema=True)
parser.add_argument('--model-ema-decay', type=float, default=0.99996, help='')
parser.add_argument('--model-ema-force-cpu', action='store_true', default=False, help='')
# Optimizer parameters
parser.add_argument('--opt', default='adamw', type=str, metavar='OPTIMIZER',
help='Optimizer (default: "adamw"')
parser.add_argument('--opt-eps', default=1e-8, type=float, metavar='EPSILON',
help='Optimizer Epsilon (default: 1e-8)')
parser.add_argument('--opt-betas', default=None, type=float, nargs='+', metavar='BETA',
help='Optimizer Betas (default: None, use opt default)')
parser.add_argument('--clip-grad', type=float, default=None, metavar='NORM',
help='Clip gradient norm (default: None, no clipping)')
parser.add_argument('--momentum', type=float, default=0.9, metavar='M',
help='SGD momentum (default: 0.9)')
parser.add_argument('--weight-decay', type=float, default=0.05,
help='weight decay (default: 0.05)')
# Learning rate schedule parameters
parser.add_argument('--sched', default='cosine', type=str, metavar='SCHEDULER',
help='LR scheduler (default: "cosine"')
parser.add_argument('--lr', type=float, default=5e-4, metavar='LR',
help='learning rate (default: 5e-4)')
parser.add_argument('--lr-noise', type=float, nargs='+', default=None, metavar='pct, pct',
help='learning rate noise on/off epoch percentages')
parser.add_argument('--lr-noise-pct', type=float, default=0.67, metavar='PERCENT',
help='learning rate noise limit percent (default: 0.67)')
parser.add_argument('--lr-noise-std', type=float, default=1.0, metavar='STDDEV',
help='learning rate noise std-dev (default: 1.0)')
parser.add_argument('--warmup-lr', type=float, default=1e-6, metavar='LR',
help='warmup learning rate (default: 1e-6)')
parser.add_argument('--min-lr', type=float, default=1e-5, metavar='LR',
help='lower lr bound for cyclic schedulers that hit 0 (1e-5)')
parser.add_argument('--decay-epochs', type=float, default=30, metavar='N',
help='epoch interval to decay LR')
parser.add_argument('--warmup-epochs', type=int, default=5, metavar='N',
help='epochs to warmup LR, if scheduler supports')
parser.add_argument('--cooldown-epochs', type=int, default=10, metavar='N',
help='epochs to cooldown LR at min_lr, after cyclic schedule ends')
parser.add_argument('--patience-epochs', type=int, default=10, metavar='N',
help='patience epochs for Plateau LR scheduler (default: 10')
parser.add_argument('--decay-rate', '--dr', type=float, default=0.1, metavar='RATE',
help='LR decay rate (default: 0.1)')
# Augmentation parameters
parser.add_argument('--color-jitter', type=float, default=0.3, metavar='PCT',
help='Color jitter factor (default: 0.3)')
parser.add_argument('--aa', type=str, default='rand-m9-mstd0.5-inc1', metavar='NAME',
help='Use AutoAugment policy. "v0" or "original". " + \
"(default: rand-m9-mstd0.5-inc1)'),
parser.add_argument('--smoothing', type=float, default=0.1, help='Label smoothing (default: 0.1)')
parser.add_argument('--train-interpolation', type=str, default='bicubic',
help='Training interpolation (random, bilinear, bicubic default: "bicubic")')
parser.add_argument('--repeated-aug', action='store_true')
parser.add_argument('--no-repeated-aug', action='store_false', dest='repeated_aug')
parser.set_defaults(repeated_aug=True)
parser.add_argument('--train-mode', action='store_true')
parser.add_argument('--no-train-mode', action='store_false', dest='train_mode')
parser.set_defaults(train_mode=True)
parser.add_argument('--ThreeAugment', action='store_true') #3augment
parser.add_argument('--src', action='store_true') #simple random crop
# add dataset parameters
parser.add_argument('--global_crops_size', '--img_size', default=224, type=int,
help="this should be equal to image size")
parser.add_argument('--patch_size', default=16, type=int,
help="patch size for vit patch embedding")
# add masking parameter
parser.add_argument('--mask_ratio', default=(0.1, 0.5), type=float, nargs='+',
help="mask ratio can be either a value or a range")
parser.add_argument('--mask_probability', default=0., type=float,
help="how many samples with be applied with masking")
parser.add_argument('--mask_first_n', action='store_true',
help="mask the first n sample to avoid shuffling. Needed for MAE-style encoder")
parser.add_argument('--clone_batch', default=1, type=int,
help="how many times to clone the batch for masking (default: 1, not cloning)")
# * Random Erase params
parser.add_argument('--reprob', type=float, default=0.25, metavar='PCT',
help='Random erase prob (default: 0.25)')
parser.add_argument('--remode', type=str, default='pixel',
help='Random erase mode (default: "pixel")')
parser.add_argument('--recount', type=int, default=1,
help='Random erase count (default: 1)')
parser.add_argument('--resplit', action='store_true', default=False,
help='Do not random erase first (clean) augmentation split')
# * Mixup params
parser.add_argument('--mixup', type=float, default=0.8,
help='mixup alpha, mixup enabled if > 0. (default: 0.8)')
parser.add_argument('--cutmix', type=float, default=1.0,
help='cutmix alpha, cutmix enabled if > 0. (default: 1.0)')
parser.add_argument('--cutmix-minmax', type=float, nargs='+', default=None,
help='cutmix min/max ratio, overrides alpha and enables cutmix if set (default: None)')
parser.add_argument('--mixup-prob', type=float, default=1.0,
help='Probability of performing mixup or cutmix when either/both is enabled')
parser.add_argument('--mixup-switch-prob', type=float, default=0.5,
help='Probability of switching to cutmix when both mixup and cutmix enabled')
parser.add_argument('--mixup-mode', type=str, default='batch',
help='How to apply mixup/cutmix params. Per "batch", "pair", or "elem"')
# Distillation parameters
parser.add_argument('--teacher-model', default='base', type=str)
parser.add_argument('--teacher-path', type=str, default='')
parser.add_argument('--distillation-type', default='none', choices=['none', 'soft', 'hard'], type=str, help="")
parser.add_argument('--distillation-alpha', default=0.5, type=float, help="")
parser.add_argument('--distillation-tau', default=1.0, type=float, help="")
parser.add_argument('--lambda_token', type=float, default=1.0)
parser.add_argument('--lambda_fea', type=float, default=1.0)
parser.add_argument('--lambda_patch', type=float, default=1.0)
# * Cosub params
parser.add_argument('--cosub', action='store_true')
# * Finetuning params
parser.add_argument('--finetune', default='', help='finetune from checkpoint')
parser.add_argument('--attn-only', action='store_true')
parser.add_argument('--weight_inherit', default='')
# Dataset parameters
parser.add_argument('--data-path', default='/datasets01/imagenet_full_size/061417/', type=str,
help='dataset path')
parser.add_argument('--data-set', default='IMNET', choices=['CIFAR', 'IMNET', 'IMNET_ibot', 'IMNET_ibot_aug', 'IMNET_ibot_fast_aug', 'INAT', 'INAT19', 'IMNET_L', 'IMNET_L_ibot'],
type=str, help='Image Net dataset path')
parser.add_argument('--inat-category', default='name',
choices=['kingdom', 'phylum', 'class', 'order', 'supercategory', 'family', 'genus', 'name'],
type=str, help='semantic granularity')
parser.add_argument('--output_dir', default='',
help='path where to save, empty for no saving')
parser.add_argument('--device', default='cuda',
help='device to use for training / testing')
parser.add_argument('--seed', default=0, type=int)
parser.add_argument('--resume', default='', help='resume from checkpoint')
parser.add_argument('--start_epoch', default=0, type=int, metavar='N',
help='start epoch')
parser.add_argument('--eval', action='store_true', help='Perform evaluation only')
parser.add_argument('--eval-crop-ratio', default=0.875, type=float, help="Crop ratio for evaluation")
parser.add_argument('--dist-eval', action='store_true', default=False, help='Enabling distributed evaluation')
parser.add_argument('--num_workers', default=10, type=int)
parser.add_argument('--pin-mem', action='store_true',
help='Pin CPU memory in DataLoader for more efficient (sometimes) transfer to GPU.')
parser.add_argument('--no-pin-mem', action='store_false', dest='pin_mem',
help='')
parser.set_defaults(pin_mem=True)
# distributed training parameters
parser.add_argument('--distributed', action='store_true', default=False, help='Enabling distributed training')
parser.add_argument('--world_size', default=1, type=int,
help='number of distributed processes')
parser.add_argument('--dist_url', default='env://', help='url used to set up distributed training')
return parser
import torchvision
import matplotlib.pyplot as plt
def visualize_features(features, output_path='./feature_visualization_settings_all.png'):
# Assuming features are of shape (batch_size, num_features, height, width)
batch_size, num_features, height, width = features.shape
# Normalize the feature maps to the range [0, 1]
vis = features.mean(dim=1, keepdim=True)
vis = vis - vis.min()
vis = vis / vis.max()
# Squeeze the channel dimension
vis = vis.squeeze(1).cpu().detach().numpy()
# Apply a colormap (e.g., viridis) to convert it to RGB
vis_colored = np.zeros((batch_size, height, width, 3))
for i in range(batch_size):
vis_colored[i] = plt.cm.viridis(vis[i])[:, :, :3] # Drop the alpha channel
# Convert vis_colored to a tensor and save using torchvision
vis_colored = torch.tensor(vis_colored).permute(0, 3, 1, 2) # Convert to (batch, channels, height, width)
# Save the image
torchvision.utils.save_image(vis_colored, output_path, normalize=True)
import torch.nn as nn
# Define a Residual Block
class ResBlock(nn.Module):
def __init__(self, in_channels, out_channels, stride=1):
super(ResBlock, self).__init__()
self.conv1 = nn.Conv2d(in_channels, out_channels, kernel_size=3, stride=stride, padding=1)
self.bn1 = nn.BatchNorm2d(out_channels)
self.relu = nn.ReLU(inplace=True)
self.conv2 = nn.Conv2d(out_channels, out_channels, kernel_size=3, stride=1, padding=1)
self.bn2 = nn.BatchNorm2d(out_channels)
if stride != 1 or in_channels != out_channels:
self.shortcut = nn.Sequential(
nn.Conv2d(in_channels, out_channels, kernel_size=1, stride=stride),
nn.BatchNorm2d(out_channels)
)
else:
self.shortcut = nn.Sequential()
def forward(self, x):
out = self.relu(self.bn1(self.conv1(x)))
out = self.bn2(self.conv2(out))
out += self.shortcut(x)
out = self.relu(out)
return out
# Define the Decoder model with stacked ResBlocks
class Decoder(nn.Module):
def __init__(self, feature_dim, output_channels=3):
super(Decoder, self).__init__()
self.initial = nn.Sequential(
nn.ConvTranspose2d(feature_dim, 512, kernel_size=4, stride=2, padding=1),
nn.BatchNorm2d(512),
nn.ReLU(inplace=True)
)
self.layer1 = ResBlock(512, 256, stride=1)
self.up1 = nn.ConvTranspose2d(256, 256, kernel_size=4, stride=2, padding=1)
self.layer2 = ResBlock(256, 128, stride=1)
self.up2 = nn.ConvTranspose2d(128, 128, kernel_size=4, stride=2, padding=1)
self.layer3 = ResBlock(128, 64, stride=1)
# self.up3 = nn.ConvTranspose2d(64, 64, kernel_size=4, stride=2, padding=1)
self.up3 = nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1)
# self.final = nn.Sequential(
# nn.ConvTranspose2d(64, output_channels, kernel_size=4, stride=2, padding=1),
# nn.Tanh() # Use Tanh to keep the output in the range [-1, 1]
# )
self.final = nn.Sequential(
nn.Conv2d(64, 64, kernel_size=3, stride=1, padding=1),
nn.ReLU(inplace=True),
nn.Conv2d(64, output_channels, kernel_size=3, stride=1, padding=1),
)
self.pre_conv = nn.Conv2d(feature_dim, feature_dim, kernel_size=3, stride=1, padding=1)
self.relu = nn.LeakyReLU(0.05, inplace=True)
self.post_conv = nn.Conv2d(feature_dim, feature_dim, kernel_size=3, stride=1, padding=1)
def forward(self, x, h, w):
x = self.pre_conv(x)
x = self.relu(x)
x = torch.nn.functional.interpolate(x, size=(h//8, w//8), mode='bicubic', align_corners=False)
x = self.post_conv(x)
x = self.relu(x)
x = self.initial(x)
x = self.layer1(x)
x = self.up1(x)
x = self.layer2(x)
x = self.up2(x)
x = self.layer3(x)
x = self.up3(x)
x = self.final(x)
return x
def cal_psnr(output, target):
mse = torch.mean((output - target) ** 2)
if(mse == 0):
return 100
max_pixel = 1.
psnr = 10 * torch.log10(max_pixel / mse)
return torch.mean(psnr)
import glob
from torch.utils.data import DataLoader, Dataset
from PIL import Image
class MSCOCO(Dataset):
def __init__(self, root, transform, img_list=None):
assert root[-1] == '/', "root to COCO dataset should end with \'/\', not {}.".format(
root)
if img_list:
self.image_paths = []
with open(img_list, 'r') as r:
lines = r.read().splitlines()
for line in lines:
self.image_paths.append(root + line)
else:
self.image_paths = sorted(glob.glob(root + "*.jpg"))
self.transform = transform
def __getitem__(self, index):
"""
Args:
index (int): Index
Returns:
object: image.
"""
img_path = self.image_paths[index]
img = Image.open(img_path).convert('RGB')
if self.transform is not None:
img = self.transform(img)
return img
def __len__(self):
return len(self.image_paths)
def visualize_features(features, output_path='./feature_visualization_fast.png'):
# Assuming features are of shape (batch_size, num_features, height, width)
batch_size, num_features, height, width = features.shape
# Normalize the feature maps to the range [0, 1]
vis = features.mean(dim=1, keepdim=True)
vis = vis - vis.min()
vis = vis / vis.max()
# Squeeze the channel dimension
vis = vis.squeeze(1).cpu().detach().numpy()
# Apply a colormap (e.g., viridis) to convert it to RGB
vis_colored = np.zeros((batch_size, height, width, 3))
for i in range(batch_size):
vis_colored[i] = plt.cm.viridis(vis[i])[:, :, :3] # Drop the alpha channel
# Convert vis_colored to a tensor and save using torchvision
vis_colored = torch.tensor(vis_colored).permute(0, 3, 1, 2) # Convert to (batch, channels, height, width)
# Save the image
torchvision.utils.save_image(vis_colored, output_path, normalize=True)
def main(args):
utils.init_distributed_mode(args)
print(args)
device = torch.device(args.device)
# fix the seed for reproducibility
seed = args.seed + utils.get_rank()
torch.manual_seed(seed)
np.random.seed(seed)
# random.seed(seed)
cudnn.benchmark = True
print(f"Creating model: {args.model}")
meta_arch_module = importlib.import_module(args.model)
MetaArch = meta_arch_module.MetaArch
model = MetaArch(args)
if args.finetune:
checkpoint = torch.load(args.finetune, map_location='cpu')
if 'state_dict' in checkpoint:
pretrained_dict = checkpoint['state_dict']
elif 'model' in checkpoint:
pretrained_dict = checkpoint['model']
else:
pretrained_dict = checkpoint
missing_keys, unexpected_keys = model.load_state_dict(pretrained_dict, False)
print('missing_keys: ', missing_keys)
print('unexpected_keys: ', unexpected_keys)
if args.attn_only:
for name_p,p in model.named_parameters():
if '.attn.' in name_p:
p.requires_grad = True
else:
p.requires_grad = False
try:
model.head.weight.requires_grad = True
model.head.bias.requires_grad = True
except:
model.fc.weight.requires_grad = True
model.fc.bias.requires_grad = True
try:
model.pos_embed.requires_grad = True
except:
print('no position encoding')
try:
for p in model.patch_embed.parameters():
p.requires_grad = False
except:
print('no patch embed')
model.to(device)
model_ema = None
if args.model_ema:
# Important to create EMA model after cuda(), DP wrapper, and AMP but before SyncBN and DDP wrapper
model_ema = ModelEma(
model.student.backbone,
decay=args.model_ema_decay,
device='cpu' if args.model_ema_force_cpu else '',
resume='')
model_without_ddp = model
if args.distributed:
model = torch.nn.parallel.DistributedDataParallel(model, device_ids=[args.gpu], find_unused_parameters=True)
model_without_ddp = model.module
n_parameters = sum(p.numel() for p in model.parameters() if p.requires_grad)
print('number of params:', n_parameters)
if not args.unscale_lr:
linear_scaled_lr = args.lr * args.batch_size * utils.get_world_size() / 512.0
args.lr = linear_scaled_lr
output_dir = Path(args.output_dir)
# Load ImageNet dataset
from torchvision import transforms
data_transforms = transforms.Compose([
# transforms.RandomCrop((448, 448)),
transforms.RandomResizedCrop(560, scale=(0.8, 1.0), interpolation=3),
transforms.RandomHorizontalFlip(),
transforms.ToTensor()
])
dataset_path = '/home/t2vg-a100-G4-1/projects/dataset/'
dataset = MSCOCO(dataset_path+"/train2017/",
data_transforms)
print(f"Loaded dataset with {len(dataset)} samples")
# Dataloader
dataloader = DataLoader(dataset, batch_size=1, shuffle=False, num_workers=4)
print('Dataloader created')
# Initialize decoder and optimizer
decoder = Decoder(feature_dim=768).to(device)
import torch.optim as optim
optimizer = optim.Adam(decoder.parameters(), lr=5e-5)
criterion = nn.MSELoss()
# checkpoint = torch.load("/data0/qiyp/Proteus-pytorch/1_pretrain/vis_maefeats_decode/model/iteration_200000.pth", map_location='cpu')
# missing_keys, unexpected_keys = decoder.load_state_dict(checkpoint, False)
writer = SummaryWriter(log_dir='vis_logs', flush_secs=30)
# Training loop
saveroot = "./vis_maefeats_decode_new"
import shutil
import os
shutil.rmtree(saveroot, ignore_errors=True)
os.makedirs(saveroot, exist_ok=True)
model.eval()
iteration = 0
save_iter = 50000
eval_iter = 100
epoch_size = len(dataloader)
for epoch in range(100):
decoder.train()
for idx, images in enumerate(dataloader):
images = images.to(device)
_, _, h, w = images.shape
# Extract features
with torch.no_grad():
# inputs = processor(images=images, return_tensors="pt").to(device)
inputs = images
features_dict = model.student.backbone(inputs, is_training=True)
features = features_dict['x_norm_patchtokens']
# features = features_dict['x_norm_clstoken']
features, _ = model.info_bottleneck(features, is_training=False)
features = features.view(-1, 40, 40, features.shape[2]) # [B, h, w, c]
features = features.permute(0, 3, 1, 2)
features = (features - features.mean()) / features.std()
features = torch.clamp(features, -5, 5)
# Decode features
reconstructed_images = decoder(features, h, w)
# Compute loss
# images = torch.nn.functional.interpolate(images, size=(256, 256), mode='bilinear', align_corners=False)
loss = criterion(reconstructed_images, images)
psnr = cal_psnr(reconstructed_images, images)
writer.add_scalar('Train_loss', loss, (epoch*epoch_size + iteration))
writer.add_scalar('Train_psnr', psnr, (epoch*epoch_size + iteration))
writer.add_image("input", make_grid(images, nrow=4), (epoch*epoch_size + iteration))
writer.add_image("rec", make_grid(reconstructed_images, nrow=4), (epoch*epoch_size + iteration))
visualize_features(features, output_path=f'{saveroot}/features_{iteration}.png')
torchvision.utils.save_image(images, f"{saveroot}/reconstructed_images_{iteration}.png", normalize=True)
# Backpropagation
optimizer.zero_grad()
loss.backward()
optimizer.step()
# print(f"Epoch [{epoch + 1}/{args.epochs}], Loss: {loss.item()}")
# print(f"Iteration [{idx + 1}/{len(dataloader)}], Loss: {loss.item()}", end='\r')
print(f"EPOCH [{epoch + 1}/{args.epochs}], ITERATION [{idx + 1}/{len(dataloader)}], LOSS: {loss.item()}, PSNR: {psnr.item()}", end='\r')
iteration += 1
# Evaluation
if iteration % eval_iter == 0 or iteration == 1:
decoder.eval()
with torch.no_grad():
savedir_vis = os.path.join(saveroot, "vis")
os.makedirs(savedir_vis, exist_ok=True)
vis = torch.cat([images, reconstructed_images], dim=2)
# denormalize
# vis = vis * torch.tensor([0.26862954, 0.26130258, 0.27577711]).view(1, 3, 1, 1).to(device) + torch.tensor([0.48145466, 0.4578275, 0.40821073]).view(1, 3, 1, 1).to(device)
# iteration = epoch * len(dataloader) + idx
torchvision.utils.save_image(vis, f"{savedir_vis}/vis_{iteration}.png", normalize=True)
decoder.train()
# Save model
if iteration % save_iter == 0:
savedir_model = os.path.join(saveroot, "model")
os.makedirs(savedir_model, exist_ok=True)
# iteration = epoch * len(dataloader) + idx
torch.save(decoder.state_dict(), f"{savedir_model}/iteration_{iteration}.pth")
writer.close()
if __name__ == '__main__':
parser = argparse.ArgumentParser('DeiT training and evaluation script', parents=[get_args_parser()])
args = parser.parse_args()
if args.output_dir:
Path(args.output_dir).mkdir(parents=True, exist_ok=True)
main(args)