"""TGNN — Temporal Graph Network for patient trajectory (Phase 2). Architecture follows TRANS (IJCAI 2024) + TETGN improvements: - Temporal heterogeneous graph: nodes are (patient_snapshot at time t). - Each snapshot is connected to phenotypes/labs/genes valid at that time. - Trajectory-aware aggregation (TETGN) — message passing weighted by elapsed time and clinical-event type. - Multi-task heads: next phenotype, next complication, time-to-event (lung disease, hospitalization, etc.). Trained on the snapshot chains stored in PatientSpace + Neo4j ClinicalSnapshot. """ from __future__ import annotations import os import logging from typing import Optional logger = logging.getLogger("gemeo.train.tgnn") CKPT = os.path.join(os.path.dirname(__file__), "..", "artifacts", "tgnn_trajectory.pt") async def predict(space, ckpt_path: str): """Inference path used by `gemeo.trajectory.predict`.""" if not os.path.exists(ckpt_path): return None try: import torch # noqa: F401 except ImportError: return None # Load model, build patient temporal graph, forward, decode horizons. # Stub: defer to bootstrap. return None def train(epochs: int = 60): """Run as `python -m gemeo.train.tgnn`.""" logger.info("TGNN scaffold — needs longitudinal labels from PatientSpace snapshots") if __name__ == "__main__": logging.basicConfig(level=logging.INFO) train()