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README.md
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# SeqScreen - ESM2 LoRA Adapter
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This repository contains the LoRA adapter weights for the protein encoder used in SeqScreen. SeqScreen is a sequence-based virtual screening method built on a dual-encoder contrastive architecture. The adapter fine-tunes [ESM2 T36
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The projection layers are available separately at [SaeedLab/SeqScreen-Finetuning](https://huggingface.co/SaeedLab/SeqScreen-Finetuning), which also contains the full model description, architecture diagram, and usage examples.
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| LoRA alpha | 32 |
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| LoRA dropout | 0.05 |
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| Task type | `FEATURE_EXTRACTION` |
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| Training data | BindingDB |
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## Usage
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# SeqScreen - ESM2 LoRA Adapter
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This repository contains the LoRA adapter weights for the protein encoder used in SeqScreen for LIT-PCBA dataset. SeqScreen is a sequence-based virtual screening method built on a dual-encoder contrastive architecture. The adapter fine-tunes [ESM2 T36](https://huggingface.co/facebook/esm2_t36_3B_UR50D) on protein-molecule interaction task.
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The projection layers are available separately at [SaeedLab/SeqScreen-Finetuning](https://huggingface.co/SaeedLab/SeqScreen-Finetuning), which also contains the full model description, architecture diagram, and usage examples.
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| LoRA alpha | 32 |
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| LoRA dropout | 0.05 |
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| Task type | `FEATURE_EXTRACTION` |
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## Usage
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