saghiralfasly Claude Sonnet 4.6 commited on
Commit
c6c114d
·
1 Parent(s): e59e2b1

Add model checkpoints for all three datasets

Browse files

- camelyon16/epoch=000064.ckpt (64 epochs, Jan 2024)
- panda/last.ckpt (Jan 2024)
- tcga/last.ckpt (232 epochs, May 2025, 100 pseudo-phenotype clusters)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Files changed (4) hide show
  1. README.md +22 -9
  2. camelyon16/epoch=000064.ckpt +3 -0
  3. panda/last.ckpt +3 -0
  4. tcga/last.ckpt +3 -0
README.md CHANGED
@@ -74,9 +74,9 @@ The tissue crops are small patches (typically 30–60px) extracted from a refere
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  | File | Dataset | Description |
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  |------|---------|-------------|
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- | `camelyon16/epoch=000064.ckpt` | Camelyon16 | Binary tumor/normal masks, 256×256 |
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- | `panda/epoch=XXXXXX.ckpt` | PANDA | Gleason grading regions *(coming soon)* |
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- | `tcga/epoch=XXXXXX.ckpt` | TCGA (self-supervised) | 100 pseudo-phenotype clusters *(coming soon)* |
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  ---
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@@ -100,18 +100,31 @@ pip install huggingface_hub
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  python - <<'EOF'
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  from huggingface_hub import hf_hub_download
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- hf_hub_download(
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- repo_id="KimiaLabMayo/HeteroTissueDiffuse",
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- filename="camelyon16/epoch=000064.ckpt",
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- local_dir="inference/"
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- )
 
 
 
 
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  EOF
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  ```
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- Or via CLI:
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  ```bash
 
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  huggingface-cli download KimiaLabMayo/HeteroTissueDiffuse \
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  camelyon16/epoch=000064.ckpt --local-dir inference/
 
 
 
 
 
 
 
 
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  ```
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  ### 3. Run inference
 
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  | File | Dataset | Description |
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  |------|---------|-------------|
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+ | `camelyon16/epoch=000064.ckpt` | Camelyon16 | Binary tumor/normal masks, 256×256, 64 epochs |
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+ | `panda/last.ckpt` | PANDA | Gleason tissue regions, 256×256 |
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+ | `tcga/last.ckpt` | TCGA (self-supervised) | 100 pseudo-phenotype clusters, 256×256, 232 epochs |
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  ---
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  python - <<'EOF'
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  from huggingface_hub import hf_hub_download
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+ # Camelyon16
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+ hf_hub_download(repo_id="KimiaLabMayo/HeteroTissueDiffuse",
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+ filename="camelyon16/epoch=000064.ckpt", local_dir="inference/")
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+ # PANDA
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+ hf_hub_download(repo_id="KimiaLabMayo/HeteroTissueDiffuse",
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+ filename="panda/last.ckpt", local_dir="inference/")
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+ # TCGA
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+ hf_hub_download(repo_id="KimiaLabMayo/HeteroTissueDiffuse",
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+ filename="tcga/last.ckpt", local_dir="inference/")
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  EOF
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  ```
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+ Or via CLI (download one dataset at a time):
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  ```bash
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+ # Camelyon16
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  huggingface-cli download KimiaLabMayo/HeteroTissueDiffuse \
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  camelyon16/epoch=000064.ckpt --local-dir inference/
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+
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+ # PANDA
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+ huggingface-cli download KimiaLabMayo/HeteroTissueDiffuse \
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+ panda/last.ckpt --local-dir inference/
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+
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+ # TCGA
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+ huggingface-cli download KimiaLabMayo/HeteroTissueDiffuse \
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+ tcga/last.ckpt --local-dir inference/
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  ```
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  ### 3. Run inference
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panda/last.ckpt ADDED
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tcga/last.ckpt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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