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Brain-Semantoks
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6951669
 
 
 
 
 
 
 
 
 
 
 
 
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6951669
 
3911a24
6951669
 
 
 
 
3911a24
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3911a24
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data:
  augment_level:
  - 1
  - 1
  - 1
  - 1
  buckner_atlas: buckner7
  buckner_networks: 1
  buckner_rois: 7
  channels: all
  crop_starts: conditional_align
  datasets:
  - atlas_creation: online
    data_path: anon
    name: ukb
    raw_signal_length: 180
    train_subject_ids_path: anon
  max_crop_distance: 80
  max_spatial: false
  min_crop_distance: 0
  min_spatial: false
  name: fmri
  network_map_path: anon
  number_of_crops: 2
  patch_size: 20
  schaefer_atlas: schaefer400
  schaefer_networks: 7
  schaefer_rois: 400
  target_signal_length: 100
  tian_atlas: tian3
  tian_networks: 1
  tian_rois: 50
  trans_mat_path: anon
dino:
  base_teacher_momentum: 0.99
  coeff: 1
  use_separate_mask_predictor: false
masking:
  canonical_network_masks: false
  masking_frequency: 0.5
  masking_ratio:
  - 0.65
  - 0.85
  masking_type: slice
model:
  backbone_type: cnn_tf
  cnn_dim: 768
  cnn_final_norm: layer
  depth: 8
  drop_path_rate: 0.0
  emb_dropout: 0.0
  embedding_dim: 768
  global_pooling: cls
  heads: 0
  layer_scale_init_value: 0.1
  mlp_dim: 0
  network_masking: false
  projection_bottleneck_dim: 128
  projection_hidden_dim: 1024
  projection_nlayers: 2
  projection_output_dim: 512
  tokenizer:
    config:
    - depthwise: false
      kernel_size: 3
      out_channels: 384
      type: dense
    - decay_max: 2.0
      decay_min: 2.0
      kernel_size: 4
      num_scales: 3
      out_channels: 384
      type: sgconv
    final_norm: layer
    pooling_type: mean
model_type: simple_dino_tf
optimizer:
  base_lr_scale: 0.0007
  lr_decay_rate: 1.0
  type: AdamW
  weight_decay: 0.05
  weight_decay_end: 0.3
run_name: spat_seed21
scheduler:
  warmup_epochs: 3
ssl:
  cls_loss_weight: 1.0
  mask_loss_weight: 0.5
  netloss_decay_schedule: cosine
  netloss_weight_decay_epochs: 5
  network_loss_weight: 0.5
training:
  batch_size: 512
  checkpoint_interval: 100
  epochs: 100
  gradient_accumulation_steps: 1
  log_interval: 1000
  num_workers: 8
  output_dir: ./output
  resume_checkpoint: null
  save_model: true
  seed: 21
  use_cuda: true