File size: 956 Bytes
3caaead | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 | FROM python:3.11-slim
RUN apt-get update && apt-get install -y --no-install-recommends \
build-essential gcc autoconf automake pkg-config wget && \
rm -rf /var/lib/apt/lists/*
# Build PhyML from source (~2 min)
RUN wget -qO /tmp/phyml.tar.gz \
https://github.com/stephaneguindon/phyml/archive/refs/tags/v3.3.20250515.tar.gz && \
tar xzf /tmp/phyml.tar.gz -C /tmp && \
cd /tmp/phyml-3.3.20250515 && \
./autogen.sh && \
./configure --enable-phyml && \
make -j$(nproc) && \
make install && \
cd / && \
rm -rf /tmp/phyml-3.3.20250515 /tmp/phyml.tar.gz
WORKDIR /app
COPY requirements.txt .
RUN pip install --no-cache-dir -r requirements.txt
# primer3-py is optional (requires C compiler) — skip silently if it fails
RUN pip install --no-cache-dir primer3-py>=2.0.3 2>/dev/null || echo "primer3-py skipped (optional)"
COPY . .
EXPOSE 7860
CMD ["uvicorn", "app.main:app", "--host", "0.0.0.0", "--port", "7860"]
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