Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,41 @@
|
|
| 1 |
-
---
|
| 2 |
-
license: mit
|
| 3 |
-
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
---
|
| 4 |
+
|
| 5 |
+
## Model description
|
| 6 |
+
|
| 7 |
+
A toy model, trained on toy data generated from spikeinterface.
|
| 8 |
+
|
| 9 |
+
# Intended use
|
| 10 |
+
|
| 11 |
+
Used to try out automated curation in SpikeInterface.
|
| 12 |
+
|
| 13 |
+
# How to Get Started with the Model
|
| 14 |
+
|
| 15 |
+
This can be used to automatically label a sorting in spikeinterface. Provided you have a `sorting_analyzer`, it is used as follows
|
| 16 |
+
|
| 17 |
+
``` python
|
| 18 |
+
from spikeinterface.curation import auto_label_units
|
| 19 |
+
labels = auto_label_units(
|
| 20 |
+
sorting_analyzer = sorting_analyzer,
|
| 21 |
+
repo_id = "SpikeInterface/toy_tetrode_model",
|
| 22 |
+
trusted = ['numpy.dtype']
|
| 23 |
+
)
|
| 24 |
+
```
|
| 25 |
+
|
| 26 |
+
or you can download the entire repositry to `a_folder_for_a_model`, and use
|
| 27 |
+
|
| 28 |
+
``` python
|
| 29 |
+
from spikeinterface.curation import auto_label_units
|
| 30 |
+
|
| 31 |
+
labels = auto_label_units(
|
| 32 |
+
sorting_analyzer = sorting_analyzer,
|
| 33 |
+
model_folder = "SpikeInterface/a_folder_for_a_model",
|
| 34 |
+
trusted = ['numpy.dtype']
|
| 35 |
+
)
|
| 36 |
+
```
|
| 37 |
+
|
| 38 |
+
# Authors
|
| 39 |
+
|
| 40 |
+
Chris Halcrow
|
| 41 |
+
|