{ "ATOMS_TO_LOAD": "backbone", "PARSE_PROTEIN": 1, "PARSE_DNA": 1, "PARSE_RNA": 1, "PARSE_RNA_AS_DNA": 0, "NA_SHARED_TOKENS": 1, "PROTEIN_BACKBONE_OCC_CUTOFF": 0.8, "PROTEIN_SIDE_CHAIN_OCC_CUTOFF": 0.5, "DNA_BACKBONE_OCC_CUTOFF": 0.8, "DNA_SIDE_CHAIN_OCC_CUTOFF": 0.5, "RNA_BACKBONE_OCC_CUTOFF": 0.8, "RNA_SIDE_CHAIN_OCC_CUTOFF": 0.5, "CROP_LARGE_STRUCTURES": 1, "BATCH_TOKENS": 6000, "NA_REF_ATOM": "C1'", "EXCLUDE_RES": ["HOH", "NA", "CL", "K", "BR"], "HIDDEN_DIM": 128, "NUM_ENCODER_LAYERS": 3, "NUM_DECODER_LAYERS": 3, "NUM_NEIGHBORS": 32, "INCLUDE_PRED_NA_N": 1, "USE_SEQUENCE_CONTEXT": true, "VOCAB_SIZE": 33, "NUM_LETTERS": 33 }