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README.md
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---
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language: en
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license: cc-by-nc-4.0
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library_name: transformers
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pipeline_tag: token-classification
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tags:
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- veterinary
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- nlp
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- named-entity-recognition
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- biomedical
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- feline
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---
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# Feline-NER
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## Model Description
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**Feline-NER** is a transformer-based named entity recognition (NER) model for **feline veterinary scientific literature**.
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The model follows the BERT architecture and was initialized from **BioBERT v1.2**, further domain-adapted on feline-related PubMed Central articles (*Feline-BERT*), and fine-tuned for NER (*Feline-NER*).
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This model is intended **solely for research and educational use**.
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## Task
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Span-level named entity recognition using a BIO tagging scheme over five entity types:
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- DISEASE
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- SYMPTOM
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- MEDICATION
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- PROCEDURE
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- ANATOMY
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## Training Data
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Fine-tuned on a manually annotated dataset of **1,300 sentences** extracted from feline-related PubMed Central articles.
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Annotations were produced by a non-veterinary researcher using an iterative human-in-the-loop workflow with LLM-assisted pre-labeling.
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## Evaluation
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- **Macro F1:** ~0.65
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- **Micro F1:** ~0.64
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(Evaluated on a 150-sentence held-out test set)
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Performance varies by entity type; PROCEDURE and ANATOMY remain challenging due to boundary ambiguity.
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## Intended Use
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- Veterinary NLP research
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- Information extraction from feline scientific literature
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- Educational demonstrations
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## ⚠️ Limitations & Warnings
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- **NOT FOR CLINICAL USE**
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- Not validated for diagnosis or treatment
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- Annotation noise and boundary ambiguity are present
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- Single-annotator dataset
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## Author
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Statistical-Impossibility
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