Instructions to use Synthyra/ESMFold2-Fast with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use Synthyra/ESMFold2-Fast with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="Synthyra/ESMFold2-Fast", trust_remote_code=True)# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("Synthyra/ESMFold2-Fast", trust_remote_code=True, device_map="auto") - Notebooks
- Google Colab
- Kaggle
File size: 1,600 Bytes
6cc35b0 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 | """Filesystem and subprocess types used by optional structure utilities."""
from __future__ import annotations
import io
import subprocess
from pathlib import Path
from typing import Any, TypeAlias
PathLike: TypeAlias = str | Path
PathOrBuffer: TypeAlias = PathLike | io.StringIO
def _stdout_destination(*, capture_output: bool, quiet: bool) -> int | None:
if capture_output:
return subprocess.PIPE
if quiet:
return subprocess.DEVNULL
return None
def _stderr_text(error: subprocess.CalledProcessError) -> str:
stderr = error.stderr
if stderr is None:
return ""
if isinstance(stderr, bytes):
return stderr.decode(errors="replace")
return str(stderr)
def run_subprocess_with_errorcheck(
*popenargs: Any,
capture_output: bool = False,
quiet: bool = False,
env: dict[str, str] | None = None,
shell: bool = False,
executable: str | None = None,
**kwargs: Any,
) -> subprocess.CompletedProcess[Any]:
"""Run a command and include captured standard error in failures."""
stdout = _stdout_destination(capture_output=capture_output, quiet=quiet)
try:
return subprocess.run(
*popenargs,
check=True,
env=env,
executable=executable,
shell=shell,
stderr=subprocess.PIPE,
stdout=stdout,
**kwargs,
)
except subprocess.CalledProcessError as error:
message = f"Command failed with errorcode {error.returncode}.\n\n{_stderr_text(error)}"
raise RuntimeError(message) from error
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