Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 73 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 46 Synthyra/og_prot90_packed Updated Oct 2 • 59 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.51k
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 54 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 352 • 1
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 13 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 14 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 23
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 86 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 15
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 61 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 63 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 5 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 38
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 29 days ago • 3.33k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 29 days ago • 949 • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated Oct 2 • 429 • 3 Synthyra/ANKH_base 0.7B • Updated 29 days ago • 331
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 38 minutes ago • 3.69M • 166 GleghornLab/vec2vec_embeddings Updated 7 days ago • 86 Synthyra/vector_embeddings Updated Oct 2 • 12
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated about 1 month ago • 36.6M • 3.32k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 207 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated 29 days ago • 417 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated 29 days ago • 1.12k
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 49 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 86 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 15
Vec2Vec GleghornLab/vec2vec_embeddings Updated 7 days ago • 86 Synthyra/vector_embeddings Updated Oct 2 • 12
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated Oct 2 • 5 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 19
Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 73 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 46 Synthyra/og_prot90_packed Updated Oct 2 • 59 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.51k
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 38 minutes ago • 3.69M • 166 GleghornLab/vec2vec_embeddings Updated 7 days ago • 86 Synthyra/vector_embeddings Updated Oct 2 • 12
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 54 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 352 • 1
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated about 1 month ago • 36.6M • 3.32k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 207 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated 29 days ago • 417 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated 29 days ago • 1.12k
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 13 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 14 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 23
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 49 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 86 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 15
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 86 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 15
Vec2Vec GleghornLab/vec2vec_embeddings Updated 7 days ago • 86 Synthyra/vector_embeddings Updated Oct 2 • 12
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 61 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 63 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 5 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 38
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated Oct 2 • 5 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 19
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 29 days ago • 3.33k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 29 days ago • 949 • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated Oct 2 • 429 • 3 Synthyra/ANKH_base 0.7B • Updated 29 days ago • 331
