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import random |
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import numpy as np |
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import torch |
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import os |
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import csv |
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import sys |
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import logging |
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from transformers import BertTokenizer, AutoTokenizer |
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from torch.utils.data import (DataLoader, RandomSampler, SequentialSampler, TensorDataset) |
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from sentence_transformers import SentenceTransformer |
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class BERT_Loader: |
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def __init__(self, args, base_attrs, logger_name = 'Discovery'): |
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self.logger = logging.getLogger(logger_name) |
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if args.method == 'SCCL' : |
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self.tokenizer = SentenceTransformer('distilbert-base-nli-stsb-mean-tokens')[0].tokenizer |
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else: |
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self.tokenizer = BertTokenizer.from_pretrained(args.pretrained_bert_model, do_lower_case=True) |
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if args.setting == 'unsupervised': |
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self.train_examples = get_examples(args, base_attrs, 'train') |
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self.eval_examples = get_examples(args, base_attrs, 'eval') |
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self.train_examples = self.train_examples + self.eval_examples |
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self.train_outputs = get_loader(self.train_examples, args, base_attrs['all_label_list'], 'train_unlabeled', self.tokenizer) |
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self.logger.info("Number of train samples = %s", str(len(self.train_examples))) |
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self.test_examples = get_examples(args, base_attrs, 'test') |
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self.logger.info("Number of testing samples = %s", str(len(self.test_examples))) |
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self.test_outputs = get_loader(self.test_examples, args, base_attrs['all_label_list'], 'test', self.tokenizer) |
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elif args.setting == 'semi_supervised': |
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self.train_examples, self.train_labeled_examples, self.train_unlabeled_examples = get_examples(args, base_attrs, 'train') |
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self.logger.info("Number of labeled training samples = %s", str(len(self.train_labeled_examples))) |
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self.logger.info("Number of unlabeled training samples = %s", str(len(self.train_unlabeled_examples))) |
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self.eval_examples = get_examples(args, base_attrs, 'eval') |
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self.logger.info("Number of evaluation samples = %s", str(len(self.eval_examples))) |
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self.test_examples = get_examples(args, base_attrs, 'test') |
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self.logger.info("Number of testing samples = %s", str(len(self.test_examples))) |
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self.train_labeled_outputs = get_loader(self.train_labeled_examples, args, base_attrs['known_label_list'], 'train_labeled', self.tokenizer) |
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self.train_unlabeled_outputs = get_loader(self.train_unlabeled_examples, args, base_attrs['all_label_list'], 'train_unlabeled', self.tokenizer) |
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self.train_outputs = get_semi_loader(self.train_labeled_examples, self.train_unlabeled_examples, base_attrs, args, self.tokenizer) |
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self.eval_outputs = get_loader(self.eval_examples, args, base_attrs['known_label_list'], 'eval', self.tokenizer) |
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self.test_outputs = get_loader(self.test_examples, args, base_attrs['all_label_list'], 'test', self.tokenizer) |
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if args.method == 'DTC_BERT': |
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self.get_examples_dtc_predict(args ,base_attrs) |
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self.num_train_examples = len(self.train_examples) |
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def get_examples_dtc_predict(self, args ,base_attrs): |
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num_val_cls = round(base_attrs['n_known_cls'] * 0.75 ) |
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self.num_val_cls = num_val_cls |
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label_val = list(np.random.choice(np.array(base_attrs['known_label_list']), num_val_cls, replace=False)) |
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label_train = [label for label in base_attrs['known_label_list'] if label not in label_val] |
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ntrain = len(self.train_examples) |
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train_labels = np.array([example.label for example in self.train_examples]) |
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train_base_attrs = {} |
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train_base_attrs['known_label_list'] = label_train |
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train_base_attrs['data_dir'] = base_attrs['data_dir'] |
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train_base_attrs['all_label_list'] = base_attrs['all_label_list'] |
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self.train_examples_dtc, self.train_labeled_examples_dtc, self.train_unlabeled_examples_dtc = get_examples(args, train_base_attrs, 'train') |
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self.logger.info("Number of labeled training samples = %s", str(len(self.train_labeled_examples_dtc))) |
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self.logger.info("Number of unlabeled training samples = %s", str(len(self.train_unlabeled_examples_dtc))) |
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self.eval_examples_dtc = get_examples(args, train_base_attrs, 'eval') |
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self.logger.info("Number of evaluation samples = %s", str(len(self.eval_examples_dtc))) |
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self.train_labeled_outputs_dtc = get_loader(self.train_labeled_examples_dtc, args, train_base_attrs['known_label_list'], 'train_labeled', self.tokenizer) |
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self.train_unlabeled_outputs_dtc = get_loader(self.train_unlabeled_examples_dtc, args, train_base_attrs['all_label_list'], 'train_unlabeled', self.tokenizer) |
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self.eval_outputs_dtc = get_loader(self.eval_examples_dtc, args, train_base_attrs['known_label_list'], 'eval', self.tokenizer) |
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val_base_attrs = {} |
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val_base_attrs['known_label_list'] = label_val |
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val_base_attrs['data_dir'] = base_attrs['data_dir'] |
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val_base_attrs['all_label_list'] = base_attrs['all_label_list'] |
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self.val_examples_dtc, self.val_labeled_examples_dtc, self.val_unlabeled_examples_dtc = get_examples(args, val_base_attrs, 'train') |
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self.val_labeled_outputs_dtc = get_loader(self.val_labeled_examples_dtc, args, val_base_attrs['known_label_list'], 'train_labeled', self.tokenizer) |
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def get_examples(args, base_attrs, mode): |
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processor = DatasetProcessor() |
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ori_examples = processor.get_examples(base_attrs['data_dir'], mode) |
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if args.setting == 'unsupervised': |
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return ori_examples |
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elif args.setting == 'semi_supervised': |
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if mode == 'train': |
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train_labels = np.array([example.label for example in ori_examples]) |
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train_labeled_ids = [] |
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for label in base_attrs['known_label_list']: |
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num = round(len(train_labels[train_labels == label]) * args.labeled_ratio) |
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pos = list(np.where(train_labels == label)[0]) |
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train_labeled_ids.extend(random.sample(pos, num)) |
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labeled_examples, unlabeled_examples = [], [] |
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for idx, example in enumerate(ori_examples): |
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if idx in train_labeled_ids: |
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labeled_examples.append(example) |
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else: |
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unlabeled_examples.append(example) |
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return ori_examples, labeled_examples, unlabeled_examples |
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elif mode == 'eval': |
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examples = [] |
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for example in ori_examples: |
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if (example.label in base_attrs['known_label_list']): |
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examples.append(example) |
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return examples |
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elif mode == 'test': |
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return ori_examples |
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def get_loader(examples, args, label_list, mode, tokenizer): |
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features = convert_examples_to_features(examples, label_list, args.max_seq_length, tokenizer) |
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input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long) |
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input_mask = torch.tensor([f.input_mask for f in features], dtype=torch.long) |
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segment_ids = torch.tensor([f.segment_ids for f in features], dtype=torch.long) |
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if mode == 'train_unlabeled': |
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label_ids = torch.tensor([-1 for f in features], dtype=torch.long) |
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else: |
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label_ids = torch.tensor([f.label_id for f in features], dtype=torch.long) |
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datatensor = TensorDataset(input_ids, input_mask, segment_ids, label_ids) |
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if mode == 'train_labeled': |
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sampler = RandomSampler(datatensor) |
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dataloader = DataLoader(datatensor, sampler=sampler, batch_size = args.train_batch_size, num_workers = args.num_workers, pin_memory = True) |
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else: |
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sampler = SequentialSampler(datatensor) |
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if mode == 'train_unlabeled': |
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dataloader = DataLoader(datatensor, sampler=sampler, batch_size = args.train_batch_size, num_workers = args.num_workers, pin_memory = True) |
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elif mode == 'eval': |
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dataloader = DataLoader(datatensor, sampler=sampler, batch_size = args.eval_batch_size, num_workers = args.num_workers, pin_memory = True) |
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elif mode == 'test': |
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dataloader = DataLoader(datatensor, sampler=sampler, batch_size = args.test_batch_size, num_workers = args.num_workers, pin_memory = True) |
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outputs = { |
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'loader': dataloader, |
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'input_ids': input_ids, |
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'input_mask': input_mask, |
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'segment_ids': segment_ids, |
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'label_ids': label_ids, |
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'data': datatensor |
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} |
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return outputs |
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def get_semi_loader(labeled_examples, unlabeled_examples, base_attrs, args, tokenizer): |
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labeled_features = convert_examples_to_features(labeled_examples, base_attrs['known_label_list'], args.max_seq_length, tokenizer) |
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unlabeled_features = convert_examples_to_features(unlabeled_examples, base_attrs['all_label_list'], args.max_seq_length, tokenizer) |
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labeled_input_ids = torch.tensor([f.input_ids for f in labeled_features], dtype=torch.long) |
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labeled_input_mask = torch.tensor([f.input_mask for f in labeled_features], dtype=torch.long) |
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labeled_segment_ids = torch.tensor([f.segment_ids for f in labeled_features], dtype=torch.long) |
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labeled_label_ids = torch.tensor([f.label_id for f in labeled_features], dtype=torch.long) |
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unlabeled_input_ids = torch.tensor([f.input_ids for f in unlabeled_features], dtype=torch.long) |
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unlabeled_input_mask = torch.tensor([f.input_mask for f in unlabeled_features], dtype=torch.long) |
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unlabeled_segment_ids = torch.tensor([f.segment_ids for f in unlabeled_features], dtype=torch.long) |
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unlabeled_label_ids = torch.tensor([-1 for f in unlabeled_features], dtype=torch.long) |
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semi_input_ids = torch.cat([labeled_input_ids, unlabeled_input_ids]) |
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semi_input_mask = torch.cat([labeled_input_mask, unlabeled_input_mask]) |
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semi_segment_ids = torch.cat([labeled_segment_ids, unlabeled_segment_ids]) |
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semi_label_ids = torch.cat([labeled_label_ids, unlabeled_label_ids]) |
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semi_data = TensorDataset(semi_input_ids, semi_input_mask, semi_segment_ids, semi_label_ids) |
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semi_sampler = SequentialSampler(semi_data) |
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semi_dataloader = DataLoader(semi_data, sampler=semi_sampler, batch_size = args.train_batch_size, num_workers = args.num_workers, pin_memory = True) |
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outputs = { |
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'loader': semi_dataloader, |
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'input_ids': semi_input_ids, |
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'input_mask': semi_input_mask, |
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'segment_ids': semi_segment_ids, |
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'label_ids': semi_label_ids, |
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'semi_data' : semi_data |
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} |
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return outputs |
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class InputExample(object): |
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"""A single training/test example for simple sequence classification.""" |
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def __init__(self, guid, text_a, text_b=None, label=None): |
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"""Constructs a InputExample. |
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Args: |
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guid: Unique id for the example. |
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text_a: string. The untokenized text of the first sequence. For single |
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sequence tasks, only this sequence must be specified. |
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text_b: (Optional) string. The untokenized text of the second sequence. |
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Only must be specified for sequence pair tasks. |
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label: (Optional) string. The label of the example. This should be |
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specified for train and dev examples, but not for test examples. |
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""" |
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self.guid = guid |
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self.text_a = text_a |
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self.text_b = text_b |
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self.label = label |
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class InputFeatures(object): |
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"""A single set of features of data.""" |
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def __init__(self, input_ids, input_mask, segment_ids, label_id): |
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self.input_ids = input_ids |
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self.input_mask = input_mask |
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self.segment_ids = segment_ids |
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self.label_id = label_id |
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class DataProcessor(object): |
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"""Base class for data converters for sequence classification data sets.""" |
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def get_train_examples(self, data_dir): |
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"""Gets a collection of `InputExample`s for the train set.""" |
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raise NotImplementedError() |
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def get_dev_examples(self, data_dir): |
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"""Gets a collection of `InputExample`s for the dev set.""" |
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raise NotImplementedError() |
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def get_labels(self): |
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"""Gets the list of labels for this data set.""" |
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raise NotImplementedError() |
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@classmethod |
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def _read_tsv(cls, input_file, quotechar=None): |
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"""Reads a tab separated value file.""" |
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with open(input_file, "r") as f: |
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reader = csv.reader(f, delimiter="\t", quotechar=quotechar) |
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lines = [] |
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for line in reader: |
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if sys.version_info[0] == 2: |
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line = list(unicode(cell, 'utf-8') for cell in line) |
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lines.append(line) |
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return lines |
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class DatasetProcessor(DataProcessor): |
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def get_examples(self, data_dir, mode): |
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if mode == 'train': |
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return self._create_examples( |
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self._read_tsv(os.path.join(data_dir, "train.tsv")), "train") |
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elif mode == 'eval': |
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return self._create_examples( |
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self._read_tsv(os.path.join(data_dir, "dev.tsv")), "train") |
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elif mode == 'test': |
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return self._create_examples( |
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self._read_tsv(os.path.join(data_dir, "test.tsv")), "test") |
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def _create_examples(self, lines, set_type): |
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"""Creates examples for the training and dev sets.""" |
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examples = [] |
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for (i, line) in enumerate(lines): |
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if i == 0: |
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continue |
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if len(line) != 2: |
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continue |
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guid = "%s-%s" % (set_type, i) |
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text_a = line[0] |
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label = line[1] |
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examples.append( |
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InputExample(guid=guid, text_a=text_a, text_b=None, label=label)) |
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return examples |
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def convert_examples_to_features(examples, label_list, max_seq_length, tokenizer): |
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"""Loads a data file into a list of `InputBatch`s.""" |
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label_map = {} |
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for i, label in enumerate(label_list): |
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label_map[label] = i |
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features = [] |
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for (ex_index, example) in enumerate(examples): |
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tokens_a = tokenizer.tokenize(example.text_a) |
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tokens_b = None |
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if example.text_b: |
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tokens_b = tokenizer.tokenize(example.text_b) |
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_truncate_seq_pair(tokens_a, tokens_b, max_seq_length - 3) |
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else: |
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if len(tokens_a) > max_seq_length - 2: |
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tokens_a = tokens_a[:(max_seq_length - 2)] |
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tokens = ["[CLS]"] + tokens_a + ["[SEP]"] |
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segment_ids = [0] * len(tokens) |
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if tokens_b: |
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tokens += tokens_b + ["[SEP]"] |
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segment_ids += [1] * (len(tokens_b) + 1) |
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input_ids = tokenizer.convert_tokens_to_ids(tokens) |
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input_mask = [1] * len(input_ids) |
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padding = [0] * (max_seq_length - len(input_ids)) |
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input_ids += padding |
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input_mask += padding |
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segment_ids += padding |
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assert len(input_ids) == max_seq_length |
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assert len(input_mask) == max_seq_length |
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assert len(segment_ids) == max_seq_length |
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label_id = label_map[example.label] |
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features.append( |
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InputFeatures(input_ids=input_ids, |
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input_mask=input_mask, |
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segment_ids=segment_ids, |
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label_id=label_id)) |
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return features |
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def _truncate_seq_pair(tokens_a, tokens_b, max_length): |
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"""Truncates a sequence pair in place to the maximum length.""" |
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while True: |
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total_length = len(tokens_a) + len(tokens_b) |
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if total_length <= max_length: |
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break |
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if len(tokens_a) > len(tokens_b): |
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tokens_a.pop(0) |
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else: |
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tokens_b.pop() |