from keras.optimizers import Adam from keras.models import Sequential from keras.layers import Dense from keras import backend as K from keras.engine.topology import Layer, InputSpec def get_encoded(model, data, nb_layer): transform = K.function([model.layers[0].input], [model.layers[nb_layer].output]) return transform(data)[0] def get_sae(args, sae_emb, tfidf_train, tfidf_test): emb_train_sae = get_encoded(sae_emb, [tfidf_train], 3) emb_test_sae = get_encoded(sae_emb, [tfidf_test], 3) return emb_train_sae, emb_test_sae def get_stacked_autoencoder(original_dim=2000, encoding_dim=10): model = Sequential([Dense(500, activation='relu', kernel_initializer='glorot_uniform', input_shape=(original_dim,)), Dense(500, activation='relu', kernel_initializer='glorot_uniform'), Dense(2000, activation='relu', kernel_initializer='glorot_uniform'), Dense(encoding_dim, activation='relu', kernel_initializer='glorot_uniform', name='encoded'), Dense(2000, activation='relu', kernel_initializer='glorot_uniform'), Dense(500, activation='relu', kernel_initializer='glorot_uniform'), Dense(500, activation='relu', kernel_initializer='glorot_uniform'), Dense(original_dim, kernel_initializer='glorot_uniform')]) adam = Adam(lr=0.005, clipnorm=1) model.compile(optimizer='adam', loss='mse') return model class ClusteringLayer(Layer): """ Clustering layer converts input sample (feature) to soft label, i.e. a vector that represents the probability of the sample belonging to each cluster. The probability is calculated with student's t-distribution. # Example ``` model.add(ClusteringLayer(n_clusters=10)) ``` # Arguments n_clusters: number of clusters. weights: list of Numpy array with shape `(n_clusters, n_features)` witch represents the initial cluster centers. alpha: degrees of freedom parameter in Student's t-distribution. Default to 1.0. # Input shape 2D tensor with shape: `(n_samples, n_features)`. # Output shape 2D tensor with shape: `(n_samples, n_clusters)`. """ def __init__(self, n_clusters, weights=None, alpha=1.0, **kwargs): if 'input_shape' not in kwargs and 'input_dim' in kwargs: kwargs['input_shape'] = (kwargs.pop('input_dim'),) super(ClusteringLayer, self).__init__(**kwargs) self.n_clusters = n_clusters self.alpha = alpha self.initial_weights = weights self.input_spec = InputSpec(ndim=2) def build(self, input_shape): assert len(input_shape) == 2 input_dim = input_shape[1] self.input_spec = InputSpec(dtype=K.floatx(), shape=(None, input_dim)) self.clusters = self.add_weight(shape=(self.n_clusters, input_dim), initializer='glorot_uniform') if self.initial_weights is not None: self.set_weights(self.initial_weights) del self.initial_weights self.built = True def call(self, inputs, **kwargs): """ student t-distribution, as same as used in t-SNE algorithm. Measure the similarity between embedded point z_i and centroid µ_j. q_ij = 1/(1+dist(x_i, µ_j)^2), then normalize it. q_ij can be interpreted as the probability of assigning sample i to cluster j. (i.e., a soft assignment) Arguments: inputs: the variable containing data, shape=(n_samples, n_features) Return: q: student's t-distribution, or soft labels for each sample. shape=(n_samples, n_clusters) """ q = 1.0 / (1.0 + (K.sum(K.square(K.expand_dims(inputs, axis=1) - self.clusters), axis=2) / self.alpha)) q **= (self.alpha + 1.0) / 2.0 q = K.transpose(K.transpose(q) / K.sum(q, axis=1)) return q def compute_output_shape(self, input_shape): assert input_shape and len(input_shape) == 2 return input_shape[0], self.n_clusters def get_config(self): config = {'n_clusters': self.n_clusters} base_config = super(ClusteringLayer, self).get_config() return dict(list(base_config.items()) + list(config.items()))