Upload folder using huggingface_hub
Browse files- .DS_Store +0 -0
- .gitattributes +6 -0
- mytrain_all/added_tokens.json +17 -0
- mytrain_all/config.json +58 -0
- mytrain_all/configuration_m3d_lamed.py +5 -0
- mytrain_all/generation_config.json +11 -0
- mytrain_all/merged_model.bin +3 -0
- mytrain_all/model-00001-of-00004.safetensors +3 -0
- mytrain_all/model-00002-of-00004.safetensors +3 -0
- mytrain_all/model-00003-of-00004.safetensors +3 -0
- mytrain_all/model-00004-of-00004.safetensors +3 -0
- mytrain_all/model.safetensors.index.json +624 -0
- mytrain_all/modeling_m3d_lamed.py +2105 -0
- mytrain_all/special_tokens_map.json +53 -0
- mytrain_all/tokenizer.model +3 -0
- mytrain_all/tokenizer_config.json +170 -0
.DS_Store
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Binary file (6.15 kB). View file
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.gitattributes
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mytrain_all/merged_model.bin filter=lfs diff=lfs merge=lfs -text
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mytrain_all/model-00001-of-00004.safetensors filter=lfs diff=lfs merge=lfs -text
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mytrain_all/model-00002-of-00004.safetensors filter=lfs diff=lfs merge=lfs -text
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mytrain_all/model-00003-of-00004.safetensors filter=lfs diff=lfs merge=lfs -text
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mytrain_all/model-00004-of-00004.safetensors filter=lfs diff=lfs merge=lfs -text
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mytrain_all/tokenizer.model filter=lfs diff=lfs merge=lfs -text
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mytrain_all/added_tokens.json
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{
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"<bx_end>": 32013,
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"<bx_start>": 32012,
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"<im_patch>": 32011,
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| 5 |
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"<|assistant|>": 32001,
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"<|endoftext|>": 32000,
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"<|end|>": 32007,
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"<|placeholder1|>": 32002,
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"<|placeholder2|>": 32003,
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"<|placeholder3|>": 32004,
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"<|placeholder4|>": 32005,
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"<|placeholder5|>": 32008,
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"<|placeholder6|>": 32009,
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"<|system|>": 32006,
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| 15 |
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"<|user|>": 32010,
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"[SEG]": 32014
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}
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mytrain_all/config.json
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{
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"architectures": [
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| 3 |
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"LamedPhi3ForCausalLM"
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| 4 |
+
],
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| 5 |
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"attention_bias": false,
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| 6 |
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"attention_dropout": 0.0,
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| 7 |
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"auto_map": {
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| 8 |
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"AutoConfig": "configuration_m3d_lamed.LamedPhi3Config",
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| 9 |
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"AutoModelForCausalLM": "modeling_m3d_lamed.LamedPhi3ForCausalLM"
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| 10 |
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},
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| 11 |
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"bos_token_id": 1,
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| 12 |
+
"embd_pdrop": 0.0,
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| 13 |
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"eos_token_id": 32000,
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| 14 |
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"hidden_act": "silu",
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| 15 |
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"hidden_size": 3072,
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| 16 |
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"image_channel": 1,
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| 17 |
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"image_size": [
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32,
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256,
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| 20 |
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256
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| 21 |
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],
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| 22 |
+
"initializer_range": 0.02,
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| 23 |
+
"intermediate_size": 8192,
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| 24 |
+
"max_position_embeddings": 4096,
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| 25 |
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"mm_hidden_size": 768,
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| 26 |
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"mm_projector_type": "spp",
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| 27 |
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"model_type": "lamed_phi3",
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| 28 |
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"num_attention_heads": 32,
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| 29 |
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"num_hidden_layers": 32,
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| 30 |
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"num_key_value_heads": 32,
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| 31 |
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"original_max_position_embeddings": 4096,
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| 32 |
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"pad_token_id": 32000,
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| 33 |
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"partial_rotary_factor": 1.0,
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| 34 |
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"patch_size": [
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| 35 |
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4,
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| 36 |
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16,
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| 37 |
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16
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| 38 |
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],
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| 39 |
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"proj_layer_num": 2,
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| 40 |
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"proj_layer_type": "mlp",
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| 41 |
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"proj_pooling_size": 2,
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| 42 |
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"proj_pooling_type": "spatial",
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| 43 |
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"resid_pdrop": 0.0,
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| 44 |
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"rms_norm_eps": 1e-05,
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| 45 |
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"rope_scaling": null,
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| 46 |
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"rope_theta": 10000.0,
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| 47 |
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"seg_token_id": 32014,
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| 48 |
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"segmentation_module": "segvol",
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| 49 |
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"sliding_window": 2047,
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| 50 |
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"tie_word_embeddings": false,
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| 51 |
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"torch_dtype": "float32",
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| 52 |
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"transformers_version": "4.51.3",
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| 53 |
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"use_cache": true,
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| 54 |
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"vision_select_feature": "patch",
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| 55 |
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"vision_select_layer": -1,
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| 56 |
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"vision_tower": "vit3d",
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| 57 |
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"vocab_size": 32015
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| 58 |
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}
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mytrain_all/configuration_m3d_lamed.py
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from transformers import Phi3Config
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| 3 |
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| 4 |
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class LamedPhi3Config(Phi3Config):
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| 5 |
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model_type = "lamed_phi3"
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mytrain_all/generation_config.json
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{
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"_from_model_config": true,
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"bos_token_id": 1,
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"eos_token_id": [
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32000,
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32001,
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32007
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| 8 |
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],
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| 9 |
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"pad_token_id": 32000,
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| 10 |
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"transformers_version": "4.51.3"
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| 11 |
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}
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mytrain_all/merged_model.bin
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 16196682617
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mytrain_all/model-00001-of-00004.safetensors
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version https://git-lfs.github.com/spec/v1
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size 4961250304
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mytrain_all/model-00002-of-00004.safetensors
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version https://git-lfs.github.com/spec/v1
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size 4983111176
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mytrain_all/model-00003-of-00004.safetensors
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version https://git-lfs.github.com/spec/v1
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size 4992612024
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mytrain_all/model-00004-of-00004.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:edaab5d43b384d83de289a2cd21f76ca269a589710819458c44b15c0c59beb9a
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size 1259512848
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mytrain_all/model.safetensors.index.json
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"model.vision_tower.vision_tower.blocks.9.attn.out_proj.weight": "model-00004-of-00004.safetensors",
|
| 608 |
+
"model.vision_tower.vision_tower.blocks.9.attn.qkv.weight": "model-00004-of-00004.safetensors",
|
| 609 |
+
"model.vision_tower.vision_tower.blocks.9.mlp.linear1.bias": "model-00004-of-00004.safetensors",
|
| 610 |
+
"model.vision_tower.vision_tower.blocks.9.mlp.linear1.weight": "model-00004-of-00004.safetensors",
|
| 611 |
+
"model.vision_tower.vision_tower.blocks.9.mlp.linear2.bias": "model-00004-of-00004.safetensors",
|
| 612 |
+
"model.vision_tower.vision_tower.blocks.9.mlp.linear2.weight": "model-00004-of-00004.safetensors",
|
| 613 |
+
"model.vision_tower.vision_tower.blocks.9.norm1.bias": "model-00004-of-00004.safetensors",
|
| 614 |
+
"model.vision_tower.vision_tower.blocks.9.norm1.weight": "model-00004-of-00004.safetensors",
|
| 615 |
+
"model.vision_tower.vision_tower.blocks.9.norm2.bias": "model-00004-of-00004.safetensors",
|
| 616 |
+
"model.vision_tower.vision_tower.blocks.9.norm2.weight": "model-00004-of-00004.safetensors",
|
| 617 |
+
"model.vision_tower.vision_tower.cls_token": "model-00003-of-00004.safetensors",
|
| 618 |
+
"model.vision_tower.vision_tower.norm.bias": "model-00004-of-00004.safetensors",
|
| 619 |
+
"model.vision_tower.vision_tower.norm.weight": "model-00004-of-00004.safetensors",
|
| 620 |
+
"model.vision_tower.vision_tower.patch_embedding.patch_embeddings.1.bias": "model-00003-of-00004.safetensors",
|
| 621 |
+
"model.vision_tower.vision_tower.patch_embedding.patch_embeddings.1.weight": "model-00003-of-00004.safetensors",
|
| 622 |
+
"model.vision_tower.vision_tower.patch_embedding.position_embeddings": "model-00003-of-00004.safetensors"
|
| 623 |
+
}
|
| 624 |
+
}
|
mytrain_all/modeling_m3d_lamed.py
ADDED
|
@@ -0,0 +1,2105 @@
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|
| 1 |
+
from __future__ import annotations
|
| 2 |
+
from typing import Union
|
| 3 |
+
from transformers import Phi3Config, Phi3Model, Phi3ForCausalLM
|
| 4 |
+
from transformers.modeling_outputs import CausalLMOutputWithPast
|
| 5 |
+
from transformers.generation.utils import GenerateOutput
|
| 6 |
+
from .configuration_m3d_lamed import LamedPhi3Config
|
| 7 |
+
from abc import ABC, abstractmethod
|
| 8 |
+
from torch import Tensor
|
| 9 |
+
import math
|
| 10 |
+
from typing import Any, Dict, List
|
| 11 |
+
import torch
|
| 12 |
+
import torch.nn as nn
|
| 13 |
+
from typing import Optional, Tuple, Type
|
| 14 |
+
from monai.networks.blocks import PatchEmbed
|
| 15 |
+
import numpy as np
|
| 16 |
+
import torch.nn.functional as F
|
| 17 |
+
|
| 18 |
+
from einops import rearrange
|
| 19 |
+
from einops.layers.torch import Rearrange
|
| 20 |
+
from collections.abc import Sequence
|
| 21 |
+
from monai.networks.blocks.patchembedding import PatchEmbeddingBlock
|
| 22 |
+
from monai.networks.blocks.transformerblock import TransformerBlock
|
| 23 |
+
from monai.networks.nets import ViT
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
class BinaryDiceLoss(nn.Module):
|
| 27 |
+
def __init__(self, smooth=1, p=2, reduction='mean'):
|
| 28 |
+
super(BinaryDiceLoss, self).__init__()
|
| 29 |
+
self.smooth = smooth
|
| 30 |
+
self.p = p
|
| 31 |
+
self.reduction = reduction
|
| 32 |
+
|
| 33 |
+
def forward(self, predict, target):
|
| 34 |
+
predict = torch.sigmoid(predict)
|
| 35 |
+
target_ = target.clone().float()
|
| 36 |
+
target_[target == -1] = 0
|
| 37 |
+
assert predict.shape[0] == target.shape[0], "predict & target batch size don't match\n" + str(predict.shape) + '\n' + str(target.shape[0])
|
| 38 |
+
predict = predict.contiguous().view(predict.shape[0], -1)
|
| 39 |
+
target_ = target_.contiguous().view(target_.shape[0], -1)
|
| 40 |
+
|
| 41 |
+
num = torch.sum(torch.mul(predict, target_), dim=1)
|
| 42 |
+
den = torch.sum(predict, dim=1) + torch.sum(target_, dim=1) + self.smooth
|
| 43 |
+
|
| 44 |
+
dice_score = 2*num / den
|
| 45 |
+
dice_loss = 1 - dice_score
|
| 46 |
+
|
| 47 |
+
# dice_loss_avg = dice_loss[target[:,0]!=-1].sum() / dice_loss[target[:,0]!=-1].shape[0]
|
| 48 |
+
dice_loss_avg = dice_loss.sum() / dice_loss.shape[0]
|
| 49 |
+
|
| 50 |
+
return dice_loss_avg
|
| 51 |
+
|
| 52 |
+
class BCELoss(nn.Module):
|
| 53 |
+
def __init__(self):
|
| 54 |
+
super(BCELoss, self).__init__()
|
| 55 |
+
self.criterion = nn.BCEWithLogitsLoss()
|
| 56 |
+
|
| 57 |
+
def forward(self, predict, target):
|
| 58 |
+
assert predict.shape == target.shape, 'predict & target shape do not match\n' + str(predict.shape) + '\n' + str(target.shape)
|
| 59 |
+
target_ = target.clone()
|
| 60 |
+
target_[target == -1] = 0
|
| 61 |
+
|
| 62 |
+
ce_loss = self.criterion(predict, target_.float())
|
| 63 |
+
|
| 64 |
+
return ce_loss
|
| 65 |
+
|
| 66 |
+
|
| 67 |
+
|
| 68 |
+
class LayerNorm2d(nn.Module):
|
| 69 |
+
def __init__(self, num_channels: int, eps: float = 1e-6) -> None:
|
| 70 |
+
super().__init__()
|
| 71 |
+
self.weight = nn.Parameter(torch.ones(num_channels))
|
| 72 |
+
self.bias = nn.Parameter(torch.zeros(num_channels))
|
| 73 |
+
self.eps = eps
|
| 74 |
+
|
| 75 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 76 |
+
u = x.mean(1, keepdim=True)
|
| 77 |
+
s = (x - u).pow(2).mean(1, keepdim=True)
|
| 78 |
+
x = (x - u) / torch.sqrt(s + self.eps)
|
| 79 |
+
x = self.weight[:, None, None] * x + self.bias[:, None, None]
|
| 80 |
+
return x
|
| 81 |
+
|
| 82 |
+
|
| 83 |
+
class MLPBlock(nn.Module):
|
| 84 |
+
def __init__(
|
| 85 |
+
self,
|
| 86 |
+
embedding_dim: int,
|
| 87 |
+
mlp_dim: int,
|
| 88 |
+
act: Type[nn.Module] = nn.GELU,
|
| 89 |
+
) -> None:
|
| 90 |
+
super().__init__()
|
| 91 |
+
self.lin1 = nn.Linear(embedding_dim, mlp_dim)
|
| 92 |
+
self.lin2 = nn.Linear(mlp_dim, embedding_dim)
|
| 93 |
+
self.act = act()
|
| 94 |
+
|
| 95 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 96 |
+
return self.lin2(self.act(self.lin1(x)))
|
| 97 |
+
|
| 98 |
+
|
| 99 |
+
class TwoWayTransformer(nn.Module):
|
| 100 |
+
def __init__(
|
| 101 |
+
self,
|
| 102 |
+
depth: int,
|
| 103 |
+
embedding_dim: int,
|
| 104 |
+
num_heads: int,
|
| 105 |
+
mlp_dim: int,
|
| 106 |
+
activation: Type[nn.Module] = nn.ReLU,
|
| 107 |
+
attention_downsample_rate: int = 2,
|
| 108 |
+
) -> None:
|
| 109 |
+
"""
|
| 110 |
+
A transformer decoder that attends to an input image using
|
| 111 |
+
queries whose positional embedding is supplied.
|
| 112 |
+
|
| 113 |
+
Args:
|
| 114 |
+
depth (int): number of layers in the transformer
|
| 115 |
+
embedding_dim (int): the channel dimension for the input embeddings
|
| 116 |
+
num_heads (int): the number of heads for multihead attention. Must
|
| 117 |
+
divide embedding_dim
|
| 118 |
+
mlp_dim (int): the channel dimension internal to the MLP block
|
| 119 |
+
activation (nn.Module): the activation to use in the MLP block
|
| 120 |
+
"""
|
| 121 |
+
super().__init__()
|
| 122 |
+
self.depth = depth
|
| 123 |
+
self.embedding_dim = embedding_dim
|
| 124 |
+
self.num_heads = num_heads
|
| 125 |
+
self.mlp_dim = mlp_dim
|
| 126 |
+
self.layers = nn.ModuleList()
|
| 127 |
+
|
| 128 |
+
for i in range(depth):
|
| 129 |
+
self.layers.append(
|
| 130 |
+
TwoWayAttentionBlock(
|
| 131 |
+
embedding_dim=embedding_dim,
|
| 132 |
+
num_heads=num_heads,
|
| 133 |
+
mlp_dim=mlp_dim,
|
| 134 |
+
activation=activation,
|
| 135 |
+
attention_downsample_rate=attention_downsample_rate,
|
| 136 |
+
skip_first_layer_pe=(i == 0),
|
| 137 |
+
)
|
| 138 |
+
)
|
| 139 |
+
|
| 140 |
+
self.final_attn_token_to_image = Attention(
|
| 141 |
+
embedding_dim, num_heads, downsample_rate=attention_downsample_rate
|
| 142 |
+
)
|
| 143 |
+
self.norm_final_attn = nn.LayerNorm(embedding_dim)
|
| 144 |
+
|
| 145 |
+
def forward(
|
| 146 |
+
self,
|
| 147 |
+
image_embedding: Tensor,
|
| 148 |
+
image_pe: Tensor,
|
| 149 |
+
point_embedding: Tensor,
|
| 150 |
+
) -> Tuple[Tensor, Tensor]:
|
| 151 |
+
"""
|
| 152 |
+
Args:
|
| 153 |
+
image_embedding (torch.Tensor): image to attend to. Should be shape
|
| 154 |
+
B x embedding_dim x h x w for any h and w.
|
| 155 |
+
image_pe (torch.Tensor): the positional encoding to add to the image. Must
|
| 156 |
+
have the same shape as image_embedding.
|
| 157 |
+
point_embedding (torch.Tensor): the embedding to add to the query points.
|
| 158 |
+
Must have shape B x N_points x embedding_dim for any N_points.
|
| 159 |
+
|
| 160 |
+
Returns:
|
| 161 |
+
torch.Tensor: the processed point_embedding
|
| 162 |
+
torch.Tensor: the processed image_embedding
|
| 163 |
+
"""
|
| 164 |
+
# BxCxHxW -> BxHWxC == B x N_image_tokens x C
|
| 165 |
+
bs, c, h, w, d = image_embedding.shape
|
| 166 |
+
image_embedding = image_embedding.flatten(2).permute(0, 2, 1)
|
| 167 |
+
image_pe = image_pe.flatten(2).permute(0, 2, 1)
|
| 168 |
+
|
| 169 |
+
# Prepare queries
|
| 170 |
+
queries = point_embedding
|
| 171 |
+
keys = image_embedding
|
| 172 |
+
|
| 173 |
+
# Apply transformer blocks and final layernorm
|
| 174 |
+
for layer in self.layers:
|
| 175 |
+
queries, keys = layer(
|
| 176 |
+
queries=queries,
|
| 177 |
+
keys=keys,
|
| 178 |
+
query_pe=point_embedding,
|
| 179 |
+
key_pe=image_pe,
|
| 180 |
+
)
|
| 181 |
+
|
| 182 |
+
# Apply the final attention layer from the points to the image
|
| 183 |
+
q = queries + point_embedding
|
| 184 |
+
k = keys + image_pe
|
| 185 |
+
attn_out = self.final_attn_token_to_image(q=q, k=k, v=keys)
|
| 186 |
+
queries = queries + attn_out
|
| 187 |
+
queries = self.norm_final_attn(queries)
|
| 188 |
+
|
| 189 |
+
return queries, keys
|
| 190 |
+
|
| 191 |
+
|
| 192 |
+
class TwoWayAttentionBlock(nn.Module):
|
| 193 |
+
def __init__(
|
| 194 |
+
self,
|
| 195 |
+
embedding_dim: int,
|
| 196 |
+
num_heads: int,
|
| 197 |
+
mlp_dim: int = 2048,
|
| 198 |
+
activation: Type[nn.Module] = nn.ReLU,
|
| 199 |
+
attention_downsample_rate: int = 2,
|
| 200 |
+
skip_first_layer_pe: bool = False,
|
| 201 |
+
) -> None:
|
| 202 |
+
"""
|
| 203 |
+
A transformer block with four layers: (1) self-attention of sparse
|
| 204 |
+
inputs, (2) cross attention of sparse inputs to dense inputs, (3) mlp
|
| 205 |
+
block on sparse inputs, and (4) cross attention of dense inputs to sparse
|
| 206 |
+
inputs.
|
| 207 |
+
|
| 208 |
+
Arguments:
|
| 209 |
+
embedding_dim (int): the channel dimension of the embeddings
|
| 210 |
+
num_heads (int): the number of heads in the attention layers
|
| 211 |
+
mlp_dim (int): the hidden dimension of the mlp block
|
| 212 |
+
activation (nn.Module): the activation of the mlp block
|
| 213 |
+
skip_first_layer_pe (bool): skip the PE on the first layer
|
| 214 |
+
"""
|
| 215 |
+
super().__init__()
|
| 216 |
+
self.self_attn = Attention(embedding_dim, num_heads)
|
| 217 |
+
self.norm1 = nn.LayerNorm(embedding_dim)
|
| 218 |
+
|
| 219 |
+
self.cross_attn_token_to_image = Attention(
|
| 220 |
+
embedding_dim, num_heads, downsample_rate=attention_downsample_rate
|
| 221 |
+
)
|
| 222 |
+
self.norm2 = nn.LayerNorm(embedding_dim)
|
| 223 |
+
|
| 224 |
+
self.mlp = MLPBlock(embedding_dim, mlp_dim, activation)
|
| 225 |
+
self.norm3 = nn.LayerNorm(embedding_dim)
|
| 226 |
+
|
| 227 |
+
self.norm4 = nn.LayerNorm(embedding_dim)
|
| 228 |
+
self.cross_attn_image_to_token = Attention(
|
| 229 |
+
embedding_dim, num_heads, downsample_rate=attention_downsample_rate
|
| 230 |
+
)
|
| 231 |
+
|
| 232 |
+
self.skip_first_layer_pe = skip_first_layer_pe
|
| 233 |
+
|
| 234 |
+
def forward(
|
| 235 |
+
self, queries: Tensor, keys: Tensor, query_pe: Tensor, key_pe: Tensor
|
| 236 |
+
) -> Tuple[Tensor, Tensor]:
|
| 237 |
+
# Self attention block
|
| 238 |
+
if self.skip_first_layer_pe:
|
| 239 |
+
queries = self.self_attn(q=queries, k=queries, v=queries)
|
| 240 |
+
else:
|
| 241 |
+
q = queries + query_pe
|
| 242 |
+
attn_out = self.self_attn(q=q, k=q, v=queries)
|
| 243 |
+
queries = queries + attn_out
|
| 244 |
+
queries = self.norm1(queries)
|
| 245 |
+
|
| 246 |
+
# Cross attention block, tokens attending to image embedding
|
| 247 |
+
q = queries + query_pe
|
| 248 |
+
k = keys + key_pe
|
| 249 |
+
attn_out = self.cross_attn_token_to_image(q=q, k=k, v=keys)
|
| 250 |
+
queries = queries + attn_out
|
| 251 |
+
queries = self.norm2(queries)
|
| 252 |
+
|
| 253 |
+
# MLP block
|
| 254 |
+
mlp_out = self.mlp(queries)
|
| 255 |
+
queries = queries + mlp_out
|
| 256 |
+
queries = self.norm3(queries)
|
| 257 |
+
|
| 258 |
+
# Cross attention block, image embedding attending to tokens
|
| 259 |
+
q = queries + query_pe
|
| 260 |
+
k = keys + key_pe
|
| 261 |
+
attn_out = self.cross_attn_image_to_token(q=k, k=q, v=queries)
|
| 262 |
+
keys = keys + attn_out
|
| 263 |
+
keys = self.norm4(keys)
|
| 264 |
+
|
| 265 |
+
return queries, keys
|
| 266 |
+
|
| 267 |
+
|
| 268 |
+
class Attention(nn.Module):
|
| 269 |
+
"""
|
| 270 |
+
An attention layer that allows for downscaling the size of the embedding
|
| 271 |
+
after projection to queries, keys, and values.
|
| 272 |
+
"""
|
| 273 |
+
|
| 274 |
+
def __init__(
|
| 275 |
+
self,
|
| 276 |
+
embedding_dim: int,
|
| 277 |
+
num_heads: int,
|
| 278 |
+
downsample_rate: int = 1,
|
| 279 |
+
) -> None:
|
| 280 |
+
super().__init__()
|
| 281 |
+
self.embedding_dim = embedding_dim
|
| 282 |
+
self.internal_dim = embedding_dim // downsample_rate
|
| 283 |
+
self.num_heads = num_heads
|
| 284 |
+
assert self.internal_dim % num_heads == 0, "num_heads must divide embedding_dim."
|
| 285 |
+
|
| 286 |
+
self.q_proj = nn.Linear(embedding_dim, self.internal_dim)
|
| 287 |
+
self.k_proj = nn.Linear(embedding_dim, self.internal_dim)
|
| 288 |
+
self.v_proj = nn.Linear(embedding_dim, self.internal_dim)
|
| 289 |
+
self.out_proj = nn.Linear(self.internal_dim, embedding_dim)
|
| 290 |
+
|
| 291 |
+
def _separate_heads(self, x: Tensor, num_heads: int) -> Tensor:
|
| 292 |
+
b, n, c = x.shape
|
| 293 |
+
x = x.reshape(b, n, num_heads, c // num_heads)
|
| 294 |
+
return x.transpose(1, 2) # B x N_heads x N_tokens x C_per_head
|
| 295 |
+
|
| 296 |
+
def _recombine_heads(self, x: Tensor) -> Tensor:
|
| 297 |
+
b, n_heads, n_tokens, c_per_head = x.shape
|
| 298 |
+
x = x.transpose(1, 2)
|
| 299 |
+
return x.reshape(b, n_tokens, n_heads * c_per_head) # B x N_tokens x C
|
| 300 |
+
|
| 301 |
+
def forward(self, q: Tensor, k: Tensor, v: Tensor) -> Tensor:
|
| 302 |
+
# Input projections
|
| 303 |
+
q = self.q_proj(q)
|
| 304 |
+
k = self.k_proj(k)
|
| 305 |
+
v = self.v_proj(v)
|
| 306 |
+
|
| 307 |
+
# Separate into heads
|
| 308 |
+
q = self._separate_heads(q, self.num_heads)
|
| 309 |
+
k = self._separate_heads(k, self.num_heads)
|
| 310 |
+
v = self._separate_heads(v, self.num_heads)
|
| 311 |
+
|
| 312 |
+
# Attention
|
| 313 |
+
_, _, _, c_per_head = q.shape
|
| 314 |
+
attn = q @ k.permute(0, 1, 3, 2) # B x N_heads x N_tokens x N_tokens
|
| 315 |
+
attn = attn / math.sqrt(c_per_head)
|
| 316 |
+
attn = torch.softmax(attn, dim=-1)
|
| 317 |
+
|
| 318 |
+
# Get output
|
| 319 |
+
out = attn @ v
|
| 320 |
+
out = self._recombine_heads(out)
|
| 321 |
+
out = self.out_proj(out)
|
| 322 |
+
|
| 323 |
+
return out
|
| 324 |
+
|
| 325 |
+
|
| 326 |
+
|
| 327 |
+
# This class and its supporting functions below lightly adapted from the ViTDet backbone available at: https://github.com/facebookresearch/detectron2/blob/main/detectron2/modeling/backbone/vit.py # noqa
|
| 328 |
+
class ImageEncoderViT(nn.Module):
|
| 329 |
+
def __init__(
|
| 330 |
+
self,
|
| 331 |
+
img_size: int = 1024,
|
| 332 |
+
patch_size: int = 16,
|
| 333 |
+
in_chans: int = 1,
|
| 334 |
+
embed_dim: int = 768,
|
| 335 |
+
depth: int = 12,
|
| 336 |
+
num_heads: int = 12,
|
| 337 |
+
mlp_ratio: float = 4.0,
|
| 338 |
+
out_chans: int = 256,
|
| 339 |
+
qkv_bias: bool = True,
|
| 340 |
+
norm_layer: Type[nn.Module] = nn.LayerNorm,
|
| 341 |
+
act_layer: Type[nn.Module] = nn.GELU,
|
| 342 |
+
use_abs_pos: bool = True,
|
| 343 |
+
use_rel_pos: bool = False,
|
| 344 |
+
rel_pos_zero_init: bool = True,
|
| 345 |
+
window_size: int = 0,
|
| 346 |
+
global_attn_indexes: Tuple[int, ...] = (),
|
| 347 |
+
) -> None:
|
| 348 |
+
"""
|
| 349 |
+
Args:
|
| 350 |
+
img_size (int): Input image size.
|
| 351 |
+
patch_size (int): Patch size.
|
| 352 |
+
in_chans (int): Number of input image channels.
|
| 353 |
+
embed_dim (int): Patch embedding dimension.
|
| 354 |
+
depth (int): Depth of ViT.
|
| 355 |
+
num_heads (int): Number of attention heads in each ViT block.
|
| 356 |
+
mlp_ratio (float): Ratio of mlp hidden dim to embedding dim.
|
| 357 |
+
qkv_bias (bool): If True, add a learnable bias to query, key, value.
|
| 358 |
+
norm_layer (nn.Module): Normalization layer.
|
| 359 |
+
act_layer (nn.Module): Activation layer.
|
| 360 |
+
use_abs_pos (bool): If True, use absolute positional embeddings.
|
| 361 |
+
use_rel_pos (bool): If True, add relative positional embeddings to the attention map.
|
| 362 |
+
rel_pos_zero_init (bool): If True, zero initialize relative positional parameters.
|
| 363 |
+
window_size (int): Window size for window attention blocks.
|
| 364 |
+
global_attn_indexes (list): Indexes for blocks using global attention.
|
| 365 |
+
"""
|
| 366 |
+
super().__init__()
|
| 367 |
+
self.img_size = img_size
|
| 368 |
+
|
| 369 |
+
# self.patch_embed = PatchEmbed(
|
| 370 |
+
# kernel_size=(patch_size, patch_size),
|
| 371 |
+
# stride=(patch_size, patch_size),
|
| 372 |
+
# in_chans=in_chans,
|
| 373 |
+
# embed_dim=embed_dim,
|
| 374 |
+
# )
|
| 375 |
+
|
| 376 |
+
self.patch_embed = PatchEmbed(
|
| 377 |
+
patch_size=patch_size,
|
| 378 |
+
in_chans=in_chans,
|
| 379 |
+
embed_dim=embed_dim,
|
| 380 |
+
spatial_dims=3,
|
| 381 |
+
)
|
| 382 |
+
|
| 383 |
+
self.pos_embed: Optional[nn.Parameter] = None
|
| 384 |
+
if use_abs_pos:
|
| 385 |
+
# Initialize absolute positional embedding with pretrain image size.
|
| 386 |
+
self.pos_embed = nn.Parameter(
|
| 387 |
+
torch.zeros(1, img_size // patch_size, img_size // patch_size, img_size // patch_size, embed_dim)
|
| 388 |
+
)
|
| 389 |
+
|
| 390 |
+
self.blocks = nn.ModuleList()
|
| 391 |
+
for i in range(depth):
|
| 392 |
+
block = Block(
|
| 393 |
+
dim=embed_dim,
|
| 394 |
+
num_heads=num_heads,
|
| 395 |
+
mlp_ratio=mlp_ratio,
|
| 396 |
+
qkv_bias=qkv_bias,
|
| 397 |
+
norm_layer=norm_layer,
|
| 398 |
+
act_layer=act_layer,
|
| 399 |
+
use_rel_pos=use_rel_pos,
|
| 400 |
+
rel_pos_zero_init=rel_pos_zero_init,
|
| 401 |
+
window_size=window_size if i not in global_attn_indexes else 0,
|
| 402 |
+
input_size=(img_size // patch_size, img_size // patch_size),
|
| 403 |
+
)
|
| 404 |
+
self.blocks.append(block)
|
| 405 |
+
|
| 406 |
+
self.neck = nn.Sequential(
|
| 407 |
+
nn.Conv2d(
|
| 408 |
+
embed_dim,
|
| 409 |
+
out_chans,
|
| 410 |
+
kernel_size=1,
|
| 411 |
+
bias=False,
|
| 412 |
+
),
|
| 413 |
+
LayerNorm2d(out_chans),
|
| 414 |
+
nn.Conv2d(
|
| 415 |
+
out_chans,
|
| 416 |
+
out_chans,
|
| 417 |
+
kernel_size=3,
|
| 418 |
+
padding=1,
|
| 419 |
+
bias=False,
|
| 420 |
+
),
|
| 421 |
+
LayerNorm2d(out_chans),
|
| 422 |
+
)
|
| 423 |
+
|
| 424 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 425 |
+
x = self.patch_embed(x)
|
| 426 |
+
print('patch embedded shape: ', x.shape) # embedded: [8, 768, 6, 6, 6]
|
| 427 |
+
if self.pos_embed is not None:
|
| 428 |
+
x = x + self.pos_embed
|
| 429 |
+
|
| 430 |
+
for blk in self.blocks:
|
| 431 |
+
x = blk(x)
|
| 432 |
+
|
| 433 |
+
x = self.neck(x.permute(0, 3, 1, 2))
|
| 434 |
+
|
| 435 |
+
return x
|
| 436 |
+
|
| 437 |
+
|
| 438 |
+
class Block(nn.Module):
|
| 439 |
+
"""Transformer blocks with support of window attention and residual propagation blocks"""
|
| 440 |
+
|
| 441 |
+
def __init__(
|
| 442 |
+
self,
|
| 443 |
+
dim: int,
|
| 444 |
+
num_heads: int,
|
| 445 |
+
mlp_ratio: float = 4.0,
|
| 446 |
+
qkv_bias: bool = True,
|
| 447 |
+
norm_layer: Type[nn.Module] = nn.LayerNorm,
|
| 448 |
+
act_layer: Type[nn.Module] = nn.GELU,
|
| 449 |
+
use_rel_pos: bool = False,
|
| 450 |
+
rel_pos_zero_init: bool = True,
|
| 451 |
+
window_size: int = 0,
|
| 452 |
+
input_size: Optional[Tuple[int, int]] = None,
|
| 453 |
+
) -> None:
|
| 454 |
+
"""
|
| 455 |
+
Args:
|
| 456 |
+
dim (int): Number of input channels.
|
| 457 |
+
num_heads (int): Number of attention heads in each ViT block.
|
| 458 |
+
mlp_ratio (float): Ratio of mlp hidden dim to embedding dim.
|
| 459 |
+
qkv_bias (bool): If True, add a learnable bias to query, key, value.
|
| 460 |
+
norm_layer (nn.Module): Normalization layer.
|
| 461 |
+
act_layer (nn.Module): Activation layer.
|
| 462 |
+
use_rel_pos (bool): If True, add relative positional embeddings to the attention map.
|
| 463 |
+
rel_pos_zero_init (bool): If True, zero initialize relative positional parameters.
|
| 464 |
+
window_size (int): Window size for window attention blocks. If it equals 0, then
|
| 465 |
+
use global attention.
|
| 466 |
+
input_size (tuple(int, int) or None): Input resolution for calculating the relative
|
| 467 |
+
positional parameter size.
|
| 468 |
+
"""
|
| 469 |
+
super().__init__()
|
| 470 |
+
self.norm1 = norm_layer(dim)
|
| 471 |
+
self.attn = Attention2(
|
| 472 |
+
dim,
|
| 473 |
+
num_heads=num_heads,
|
| 474 |
+
qkv_bias=qkv_bias,
|
| 475 |
+
use_rel_pos=use_rel_pos,
|
| 476 |
+
rel_pos_zero_init=rel_pos_zero_init,
|
| 477 |
+
input_size=input_size if window_size == 0 else (window_size, window_size),
|
| 478 |
+
)
|
| 479 |
+
|
| 480 |
+
self.norm2 = norm_layer(dim)
|
| 481 |
+
self.mlp = MLPBlock(embedding_dim=dim, mlp_dim=int(dim * mlp_ratio), act=act_layer)
|
| 482 |
+
|
| 483 |
+
self.window_size = window_size
|
| 484 |
+
|
| 485 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 486 |
+
shortcut = x
|
| 487 |
+
x = self.norm1(x)
|
| 488 |
+
# Window partition
|
| 489 |
+
if self.window_size > 0:
|
| 490 |
+
H, W = x.shape[1], x.shape[2]
|
| 491 |
+
x, pad_hw = window_partition(x, self.window_size)
|
| 492 |
+
|
| 493 |
+
x = self.attn(x)
|
| 494 |
+
# Reverse window partition
|
| 495 |
+
if self.window_size > 0:
|
| 496 |
+
x = window_unpartition(x, self.window_size, pad_hw, (H, W))
|
| 497 |
+
|
| 498 |
+
x = shortcut + x
|
| 499 |
+
x = x + self.mlp(self.norm2(x))
|
| 500 |
+
|
| 501 |
+
return x
|
| 502 |
+
|
| 503 |
+
|
| 504 |
+
class Attention2(nn.Module):
|
| 505 |
+
"""Multi-head Attention block with relative position embeddings."""
|
| 506 |
+
|
| 507 |
+
def __init__(
|
| 508 |
+
self,
|
| 509 |
+
dim: int,
|
| 510 |
+
num_heads: int = 8,
|
| 511 |
+
qkv_bias: bool = True,
|
| 512 |
+
use_rel_pos: bool = False,
|
| 513 |
+
rel_pos_zero_init: bool = True,
|
| 514 |
+
input_size: Optional[Tuple[int, int]] = None,
|
| 515 |
+
) -> None:
|
| 516 |
+
"""
|
| 517 |
+
Args:
|
| 518 |
+
dim (int): Number of input channels.
|
| 519 |
+
num_heads (int): Number of attention heads.
|
| 520 |
+
qkv_bias (bool): If True, add a learnable bias to query, key, value.
|
| 521 |
+
rel_pos (bool): If True, add relative positional embeddings to the attention map.
|
| 522 |
+
rel_pos_zero_init (bool): If True, zero initialize relative positional parameters.
|
| 523 |
+
input_size (tuple(int, int) or None): Input resolution for calculating the relative
|
| 524 |
+
positional parameter size.
|
| 525 |
+
"""
|
| 526 |
+
super().__init__()
|
| 527 |
+
self.num_heads = num_heads
|
| 528 |
+
head_dim = dim // num_heads
|
| 529 |
+
self.scale = head_dim ** -0.5
|
| 530 |
+
|
| 531 |
+
self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
|
| 532 |
+
self.proj = nn.Linear(dim, dim)
|
| 533 |
+
|
| 534 |
+
self.use_rel_pos = use_rel_pos
|
| 535 |
+
if self.use_rel_pos:
|
| 536 |
+
assert (
|
| 537 |
+
input_size is not None
|
| 538 |
+
), "Input size must be provided if using relative positional encoding."
|
| 539 |
+
# initialize relative positional embeddings
|
| 540 |
+
self.rel_pos_h = nn.Parameter(torch.zeros(2 * input_size[0] - 1, head_dim))
|
| 541 |
+
self.rel_pos_w = nn.Parameter(torch.zeros(2 * input_size[1] - 1, head_dim))
|
| 542 |
+
|
| 543 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 544 |
+
B, H, W, _ = x.shape
|
| 545 |
+
# qkv with shape (3, B, nHead, H * W, C)
|
| 546 |
+
qkv = self.qkv(x).reshape(B, H * W, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
|
| 547 |
+
# q, k, v with shape (B * nHead, H * W, C)
|
| 548 |
+
q, k, v = qkv.reshape(3, B * self.num_heads, H * W, -1).unbind(0)
|
| 549 |
+
|
| 550 |
+
attn = (q * self.scale) @ k.transpose(-2, -1)
|
| 551 |
+
|
| 552 |
+
if self.use_rel_pos:
|
| 553 |
+
attn = add_decomposed_rel_pos(attn, q, self.rel_pos_h, self.rel_pos_w, (H, W), (H, W))
|
| 554 |
+
|
| 555 |
+
attn = attn.softmax(dim=-1)
|
| 556 |
+
x = (attn @ v).view(B, self.num_heads, H, W, -1).permute(0, 2, 3, 1, 4).reshape(B, H, W, -1)
|
| 557 |
+
x = self.proj(x)
|
| 558 |
+
|
| 559 |
+
return x
|
| 560 |
+
|
| 561 |
+
|
| 562 |
+
def window_partition(x: torch.Tensor, window_size: int) -> Tuple[torch.Tensor, Tuple[int, int]]:
|
| 563 |
+
"""
|
| 564 |
+
Partition into non-overlapping windows with padding if needed.
|
| 565 |
+
Args:
|
| 566 |
+
x (tensor): input tokens with [B, H, W, C].
|
| 567 |
+
window_size (int): window size.
|
| 568 |
+
|
| 569 |
+
Returns:
|
| 570 |
+
windows: windows after partition with [B * num_windows, window_size, window_size, C].
|
| 571 |
+
(Hp, Wp): padded height and width before partition
|
| 572 |
+
"""
|
| 573 |
+
B, H, W, C = x.shape
|
| 574 |
+
|
| 575 |
+
pad_h = (window_size - H % window_size) % window_size
|
| 576 |
+
pad_w = (window_size - W % window_size) % window_size
|
| 577 |
+
if pad_h > 0 or pad_w > 0:
|
| 578 |
+
x = F.pad(x, (0, 0, 0, pad_w, 0, pad_h))
|
| 579 |
+
Hp, Wp = H + pad_h, W + pad_w
|
| 580 |
+
|
| 581 |
+
x = x.view(B, Hp // window_size, window_size, Wp // window_size, window_size, C)
|
| 582 |
+
windows = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, C)
|
| 583 |
+
return windows, (Hp, Wp)
|
| 584 |
+
|
| 585 |
+
|
| 586 |
+
def window_unpartition(
|
| 587 |
+
windows: torch.Tensor, window_size: int, pad_hw: Tuple[int, int], hw: Tuple[int, int]
|
| 588 |
+
) -> torch.Tensor:
|
| 589 |
+
"""
|
| 590 |
+
Window unpartition into original sequences and removing padding.
|
| 591 |
+
Args:
|
| 592 |
+
windows (tensor): input tokens with [B * num_windows, window_size, window_size, C].
|
| 593 |
+
window_size (int): window size.
|
| 594 |
+
pad_hw (Tuple): padded height and width (Hp, Wp).
|
| 595 |
+
hw (Tuple): original height and width (H, W) before padding.
|
| 596 |
+
|
| 597 |
+
Returns:
|
| 598 |
+
x: unpartitioned sequences with [B, H, W, C].
|
| 599 |
+
"""
|
| 600 |
+
Hp, Wp = pad_hw
|
| 601 |
+
H, W = hw
|
| 602 |
+
B = windows.shape[0] // (Hp * Wp // window_size // window_size)
|
| 603 |
+
x = windows.view(B, Hp // window_size, Wp // window_size, window_size, window_size, -1)
|
| 604 |
+
x = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(B, Hp, Wp, -1)
|
| 605 |
+
|
| 606 |
+
if Hp > H or Wp > W:
|
| 607 |
+
x = x[:, :H, :W, :].contiguous()
|
| 608 |
+
return x
|
| 609 |
+
|
| 610 |
+
|
| 611 |
+
def get_rel_pos(q_size: int, k_size: int, rel_pos: torch.Tensor) -> torch.Tensor:
|
| 612 |
+
"""
|
| 613 |
+
Get relative positional embeddings according to the relative positions of
|
| 614 |
+
query and key sizes.
|
| 615 |
+
Args:
|
| 616 |
+
q_size (int): size of query q.
|
| 617 |
+
k_size (int): size of key k.
|
| 618 |
+
rel_pos (Tensor): relative position embeddings (L, C).
|
| 619 |
+
|
| 620 |
+
Returns:
|
| 621 |
+
Extracted positional embeddings according to relative positions.
|
| 622 |
+
"""
|
| 623 |
+
max_rel_dist = int(2 * max(q_size, k_size) - 1)
|
| 624 |
+
# Interpolate rel pos if needed.
|
| 625 |
+
if rel_pos.shape[0] != max_rel_dist:
|
| 626 |
+
# Interpolate rel pos.
|
| 627 |
+
rel_pos_resized = F.interpolate(
|
| 628 |
+
rel_pos.reshape(1, rel_pos.shape[0], -1).permute(0, 2, 1),
|
| 629 |
+
size=max_rel_dist,
|
| 630 |
+
mode="linear",
|
| 631 |
+
)
|
| 632 |
+
rel_pos_resized = rel_pos_resized.reshape(-1, max_rel_dist).permute(1, 0)
|
| 633 |
+
else:
|
| 634 |
+
rel_pos_resized = rel_pos
|
| 635 |
+
|
| 636 |
+
# Scale the coords with short length if shapes for q and k are different.
|
| 637 |
+
q_coords = torch.arange(q_size)[:, None] * max(k_size / q_size, 1.0)
|
| 638 |
+
k_coords = torch.arange(k_size)[None, :] * max(q_size / k_size, 1.0)
|
| 639 |
+
relative_coords = (q_coords - k_coords) + (k_size - 1) * max(q_size / k_size, 1.0)
|
| 640 |
+
|
| 641 |
+
return rel_pos_resized[relative_coords.long()]
|
| 642 |
+
|
| 643 |
+
|
| 644 |
+
def add_decomposed_rel_pos(
|
| 645 |
+
attn: torch.Tensor,
|
| 646 |
+
q: torch.Tensor,
|
| 647 |
+
rel_pos_h: torch.Tensor,
|
| 648 |
+
rel_pos_w: torch.Tensor,
|
| 649 |
+
q_size: Tuple[int, int],
|
| 650 |
+
k_size: Tuple[int, int],
|
| 651 |
+
) -> torch.Tensor:
|
| 652 |
+
"""
|
| 653 |
+
Calculate decomposed Relative Positional Embeddings from :paper:`mvitv2`.
|
| 654 |
+
https://github.com/facebookresearch/mvit/blob/19786631e330df9f3622e5402b4a419a263a2c80/mvit/models/attention.py # noqa B950
|
| 655 |
+
Args:
|
| 656 |
+
attn (Tensor): attention map.
|
| 657 |
+
q (Tensor): query q in the attention layer with shape (B, q_h * q_w, C).
|
| 658 |
+
rel_pos_h (Tensor): relative position embeddings (Lh, C) for height axis.
|
| 659 |
+
rel_pos_w (Tensor): relative position embeddings (Lw, C) for width axis.
|
| 660 |
+
q_size (Tuple): spatial sequence size of query q with (q_h, q_w).
|
| 661 |
+
k_size (Tuple): spatial sequence size of key k with (k_h, k_w).
|
| 662 |
+
|
| 663 |
+
Returns:
|
| 664 |
+
attn (Tensor): attention map with added relative positional embeddings.
|
| 665 |
+
"""
|
| 666 |
+
q_h, q_w = q_size
|
| 667 |
+
k_h, k_w = k_size
|
| 668 |
+
Rh = get_rel_pos(q_h, k_h, rel_pos_h)
|
| 669 |
+
Rw = get_rel_pos(q_w, k_w, rel_pos_w)
|
| 670 |
+
|
| 671 |
+
B, _, dim = q.shape
|
| 672 |
+
r_q = q.reshape(B, q_h, q_w, dim)
|
| 673 |
+
rel_h = torch.einsum("bhwc,hkc->bhwk", r_q, Rh)
|
| 674 |
+
rel_w = torch.einsum("bhwc,wkc->bhwk", r_q, Rw)
|
| 675 |
+
|
| 676 |
+
attn = (
|
| 677 |
+
attn.view(B, q_h, q_w, k_h, k_w) + rel_h[:, :, :, :, None] + rel_w[:, :, :, None, :]
|
| 678 |
+
).view(B, q_h * q_w, k_h * k_w)
|
| 679 |
+
|
| 680 |
+
return attn
|
| 681 |
+
|
| 682 |
+
|
| 683 |
+
class PromptEncoder(nn.Module):
|
| 684 |
+
def __init__(
|
| 685 |
+
self,
|
| 686 |
+
embed_dim: int,
|
| 687 |
+
image_embedding_size: Tuple[int, int, int],
|
| 688 |
+
input_image_size: Tuple[int, int, int],
|
| 689 |
+
mask_in_chans: int,
|
| 690 |
+
activation: Type[nn.Module] = nn.GELU,
|
| 691 |
+
) -> None:
|
| 692 |
+
"""
|
| 693 |
+
Encodes prompts for input to SAM's mask decoder.
|
| 694 |
+
|
| 695 |
+
Arguments:
|
| 696 |
+
embed_dim (int): The prompts' embedding dimension
|
| 697 |
+
image_embedding_size (tuple(int, int)): The spatial size of the
|
| 698 |
+
image embedding, as (H, W).
|
| 699 |
+
input_image_size (int): The padded size of the image as input
|
| 700 |
+
to the image encoder, as (H, W).
|
| 701 |
+
mask_in_chans (int): The number of hidden channels used for
|
| 702 |
+
encoding input masks.
|
| 703 |
+
activation (nn.Module): The activation to use when encoding
|
| 704 |
+
input masks.
|
| 705 |
+
"""
|
| 706 |
+
super().__init__()
|
| 707 |
+
self.embed_dim = embed_dim
|
| 708 |
+
self.input_image_size = input_image_size
|
| 709 |
+
self.image_embedding_size = image_embedding_size
|
| 710 |
+
self.pe_layer = PositionEmbeddingRandom(embed_dim // 2)
|
| 711 |
+
|
| 712 |
+
self.num_point_embeddings: int = 4 # pos/neg point + 2 box corners
|
| 713 |
+
point_embeddings = [nn.Embedding(1, embed_dim) for i in range(self.num_point_embeddings)]
|
| 714 |
+
self.point_embeddings = nn.ModuleList(point_embeddings)
|
| 715 |
+
self.not_a_point_embed = nn.Embedding(1, embed_dim)
|
| 716 |
+
|
| 717 |
+
self.mask_input_size = (4 * image_embedding_size[0], 4 * image_embedding_size[1], 4 * image_embedding_size[2])
|
| 718 |
+
self.mask_downscaling = nn.Sequential(
|
| 719 |
+
nn.Conv2d(1, mask_in_chans // 4, kernel_size=2, stride=2),
|
| 720 |
+
LayerNorm2d(mask_in_chans // 4),
|
| 721 |
+
activation(),
|
| 722 |
+
nn.Conv2d(mask_in_chans // 4, mask_in_chans, kernel_size=2, stride=2),
|
| 723 |
+
LayerNorm2d(mask_in_chans),
|
| 724 |
+
activation(),
|
| 725 |
+
nn.Conv2d(mask_in_chans, embed_dim, kernel_size=1),
|
| 726 |
+
)
|
| 727 |
+
self.no_mask_embed = nn.Embedding(1, embed_dim)
|
| 728 |
+
|
| 729 |
+
def get_dense_pe(self) -> torch.Tensor:
|
| 730 |
+
"""
|
| 731 |
+
Returns the positional encoding used to encode point prompts,
|
| 732 |
+
applied to a dense set of points the shape of the image encoding.
|
| 733 |
+
|
| 734 |
+
Returns:
|
| 735 |
+
torch.Tensor: Positional encoding with shape
|
| 736 |
+
1x(embed_dim)x(embedding_h)x(embedding_w)
|
| 737 |
+
"""
|
| 738 |
+
return self.pe_layer(self.image_embedding_size).unsqueeze(0)
|
| 739 |
+
|
| 740 |
+
def _embed_points(
|
| 741 |
+
self,
|
| 742 |
+
points: torch.Tensor,
|
| 743 |
+
labels: torch.Tensor,
|
| 744 |
+
pad: bool,
|
| 745 |
+
) -> torch.Tensor:
|
| 746 |
+
"""Embeds point prompts."""
|
| 747 |
+
points = points + 0.5 # Shift to center of pixel
|
| 748 |
+
if pad:
|
| 749 |
+
padding_point = torch.zeros((points.shape[0], 1, 3), device=points.device)
|
| 750 |
+
padding_label = -torch.ones((labels.shape[0], 1), device=labels.device)
|
| 751 |
+
points = torch.cat([points, padding_point], dim=1)
|
| 752 |
+
labels = torch.cat([labels, padding_label], dim=1)
|
| 753 |
+
point_embedding = self.pe_layer.forward_with_coords(points, self.input_image_size)
|
| 754 |
+
point_embedding[labels == -1] = 0.0
|
| 755 |
+
point_embedding[labels == -1] += self.not_a_point_embed.weight
|
| 756 |
+
point_embedding[labels == 0] += self.point_embeddings[0].weight
|
| 757 |
+
point_embedding[labels == 1] += self.point_embeddings[1].weight
|
| 758 |
+
return point_embedding
|
| 759 |
+
|
| 760 |
+
def _embed_boxes(self, boxes: torch.Tensor) -> torch.Tensor:
|
| 761 |
+
"""Embeds box prompts."""
|
| 762 |
+
boxes = boxes + 0.5 # Shift to center of pixel
|
| 763 |
+
coords = boxes.reshape(-1, 2, 3)
|
| 764 |
+
corner_embedding = self.pe_layer.forward_with_coords(coords, self.input_image_size)
|
| 765 |
+
corner_embedding[:, 0, :] += self.point_embeddings[2].weight
|
| 766 |
+
corner_embedding[:, 1, :] += self.point_embeddings[3].weight
|
| 767 |
+
return corner_embedding
|
| 768 |
+
|
| 769 |
+
def _embed_masks(self, masks: torch.Tensor) -> torch.Tensor:
|
| 770 |
+
"""Embeds mask inputs."""
|
| 771 |
+
mask_embedding = self.mask_downscaling(masks)
|
| 772 |
+
return mask_embedding
|
| 773 |
+
|
| 774 |
+
def _get_batch_size(
|
| 775 |
+
self,
|
| 776 |
+
points: Optional[Tuple[torch.Tensor, torch.Tensor]],
|
| 777 |
+
boxes: Optional[torch.Tensor],
|
| 778 |
+
masks: Optional[torch.Tensor],
|
| 779 |
+
text_embedding: Optional[torch.Tensor],
|
| 780 |
+
) -> int:
|
| 781 |
+
"""
|
| 782 |
+
Gets the batch size of the output given the batch size of the input prompts.
|
| 783 |
+
"""
|
| 784 |
+
if points is not None:
|
| 785 |
+
return points[0].shape[0]
|
| 786 |
+
elif boxes is not None:
|
| 787 |
+
return boxes.shape[0]
|
| 788 |
+
elif masks is not None:
|
| 789 |
+
return masks.shape[0]
|
| 790 |
+
elif text_embedding is not None:
|
| 791 |
+
return text_embedding.shape[0]
|
| 792 |
+
else:
|
| 793 |
+
return 1
|
| 794 |
+
|
| 795 |
+
def _get_device(self) -> torch.device:
|
| 796 |
+
return self.point_embeddings[0].weight.device
|
| 797 |
+
|
| 798 |
+
def forward(
|
| 799 |
+
self,
|
| 800 |
+
points: Optional[Tuple[torch.Tensor, torch.Tensor]],
|
| 801 |
+
boxes: Optional[torch.Tensor],
|
| 802 |
+
masks: Optional[torch.Tensor],
|
| 803 |
+
text_embedding: Optional[torch.Tensor],
|
| 804 |
+
) -> Tuple[torch.Tensor, torch.Tensor]:
|
| 805 |
+
"""
|
| 806 |
+
Embeds different types of prompts, returning both sparse and dense
|
| 807 |
+
embeddings.
|
| 808 |
+
|
| 809 |
+
Arguments:
|
| 810 |
+
points (tuple(torch.Tensor, torch.Tensor) or none): point coordinates
|
| 811 |
+
and labels to embed.
|
| 812 |
+
boxes (torch.Tensor or none): boxes to embed
|
| 813 |
+
masks (torch.Tensor or none): masks to embed
|
| 814 |
+
text: test prompt (B, 768)
|
| 815 |
+
|
| 816 |
+
Returns:
|
| 817 |
+
torch.Tensor: sparse embeddings for the points and boxes, with shape
|
| 818 |
+
BxNx(embed_dim), where N is determined by the number of input points
|
| 819 |
+
and boxes.
|
| 820 |
+
torch.Tensor: dense embeddings for the masks, in the shape
|
| 821 |
+
Bx(embed_dim)x(embed_H)x(embed_W)
|
| 822 |
+
"""
|
| 823 |
+
# print('prompt encoder here...')
|
| 824 |
+
|
| 825 |
+
bs = self._get_batch_size(points, boxes, masks, text_embedding)
|
| 826 |
+
sparse_embeddings = torch.empty((bs, 0, self.embed_dim), device=self._get_device(),
|
| 827 |
+
dtype=self.point_embeddings[0].weight.dtype)
|
| 828 |
+
# print('sparse_embeddings ', sparse_embeddings.shape)
|
| 829 |
+
if points is not None:
|
| 830 |
+
coords, labels = points
|
| 831 |
+
point_embeddings = self._embed_points(coords, labels, pad=(boxes is None))
|
| 832 |
+
sparse_embeddings = torch.cat([sparse_embeddings, point_embeddings], dim=1)
|
| 833 |
+
|
| 834 |
+
if boxes is not None:
|
| 835 |
+
box_embeddings = self._embed_boxes(boxes)
|
| 836 |
+
sparse_embeddings = torch.cat([sparse_embeddings, box_embeddings], dim=1)
|
| 837 |
+
|
| 838 |
+
if text_embedding is not None:
|
| 839 |
+
sparse_embeddings = torch.cat([sparse_embeddings, text_embedding.unsqueeze(dim=1)], dim=1)
|
| 840 |
+
|
| 841 |
+
# print('box_embeddings ', box_embeddings.shape)
|
| 842 |
+
# print('sparse_embeddings after box/point/text', sparse_embeddings.shape)
|
| 843 |
+
|
| 844 |
+
if masks is not None:
|
| 845 |
+
dense_embeddings = self._embed_masks(masks)
|
| 846 |
+
else:
|
| 847 |
+
dense_embeddings = self.no_mask_embed.weight.reshape(1, -1, 1, 1, 1).expand(
|
| 848 |
+
bs, -1, int(self.image_embedding_size[0]), int(self.image_embedding_size[1]),
|
| 849 |
+
int(self.image_embedding_size[2])
|
| 850 |
+
)
|
| 851 |
+
return sparse_embeddings, dense_embeddings
|
| 852 |
+
|
| 853 |
+
|
| 854 |
+
class PositionEmbeddingRandom(nn.Module):
|
| 855 |
+
"""
|
| 856 |
+
Positional encoding using random spatial frequencies.
|
| 857 |
+
"""
|
| 858 |
+
|
| 859 |
+
def __init__(self, num_pos_feats: int = 64, scale: Optional[float] = None) -> None:
|
| 860 |
+
super().__init__()
|
| 861 |
+
if scale is None or scale <= 0.0:
|
| 862 |
+
scale = 1.0
|
| 863 |
+
self.register_buffer(
|
| 864 |
+
"positional_encoding_gaussian_matrix",
|
| 865 |
+
scale * torch.randn((3, num_pos_feats)),
|
| 866 |
+
)
|
| 867 |
+
|
| 868 |
+
def _pe_encoding(self, coords: torch.Tensor) -> torch.Tensor:
|
| 869 |
+
"""Positionally encode points that are normalized to [0,1]."""
|
| 870 |
+
# assuming coords are in [0, 1]^2 square and have d_1 x ... x d_n x 2 shape
|
| 871 |
+
coords = 2 * coords - 1
|
| 872 |
+
coords = coords @ self.positional_encoding_gaussian_matrix
|
| 873 |
+
coords = 2 * np.pi * coords
|
| 874 |
+
# outputs d_1 x ... x d_n x C shape
|
| 875 |
+
return torch.cat([torch.sin(coords), torch.cos(coords)], dim=-1)
|
| 876 |
+
|
| 877 |
+
def forward(self, size: Tuple[int, int, int]) -> torch.Tensor:
|
| 878 |
+
"""Generate positional encoding for a grid of the specified size."""
|
| 879 |
+
h, w, d = size
|
| 880 |
+
device: Any = self.positional_encoding_gaussian_matrix.device
|
| 881 |
+
dtype = self.positional_encoding_gaussian_matrix.dtype
|
| 882 |
+
grid = torch.ones((h, w, d), device=device, dtype=dtype)
|
| 883 |
+
y_embed = grid.cumsum(dim=0) - 0.5
|
| 884 |
+
x_embed = grid.cumsum(dim=1) - 0.5
|
| 885 |
+
z_embed = grid.cumsum(dim=2) - 0.5
|
| 886 |
+
y_embed = y_embed / h
|
| 887 |
+
x_embed = x_embed / w
|
| 888 |
+
z_embed = z_embed / d
|
| 889 |
+
|
| 890 |
+
pe = self._pe_encoding(torch.stack([x_embed, y_embed, z_embed], dim=-1))
|
| 891 |
+
return pe.permute(3, 0, 1, 2) # C x H x W x D
|
| 892 |
+
|
| 893 |
+
def forward_with_coords(
|
| 894 |
+
self, coords_input: torch.Tensor, image_size: Tuple[int, int]
|
| 895 |
+
) -> torch.Tensor:
|
| 896 |
+
"""Positionally encode points that are not normalized to [0,1]."""
|
| 897 |
+
coords = coords_input.clone()
|
| 898 |
+
coords[:, :, 0] = coords[:, :, 0] / image_size[1]
|
| 899 |
+
coords[:, :, 1] = coords[:, :, 1] / image_size[0]
|
| 900 |
+
coords[:, :, 2] = coords[:, :, 2] / image_size[2]
|
| 901 |
+
return self._pe_encoding(coords.to(torch.float)) # B x N x C
|
| 902 |
+
|
| 903 |
+
|
| 904 |
+
class MaskDecoder(nn.Module):
|
| 905 |
+
def __init__(
|
| 906 |
+
self,
|
| 907 |
+
*,
|
| 908 |
+
image_encoder_type: str,
|
| 909 |
+
transformer_dim: int,
|
| 910 |
+
transformer: nn.Module,
|
| 911 |
+
num_multimask_outputs: int = 3,
|
| 912 |
+
activation: Type[nn.Module] = nn.GELU,
|
| 913 |
+
iou_head_depth: int = 3,
|
| 914 |
+
iou_head_hidden_dim: int = 256,
|
| 915 |
+
image_size,
|
| 916 |
+
patch_size,
|
| 917 |
+
) -> None:
|
| 918 |
+
"""
|
| 919 |
+
Predicts masks given an image and prompt embeddings, using a
|
| 920 |
+
transformer architecture.
|
| 921 |
+
|
| 922 |
+
Arguments:
|
| 923 |
+
transformer_dim (int): the channel dimension of the transformer
|
| 924 |
+
transformer (nn.Module): the transformer used to predict masks
|
| 925 |
+
num_multimask_outputs (int): the number of masks to predict
|
| 926 |
+
when disambiguating masks
|
| 927 |
+
activation (nn.Module): the type of activation to use when
|
| 928 |
+
upscaling masks
|
| 929 |
+
iou_head_depth (int): the depth of the MLP used to predict
|
| 930 |
+
mask quality
|
| 931 |
+
iou_head_hidden_dim (int): the hidden dimension of the MLP
|
| 932 |
+
used to predict mask quality
|
| 933 |
+
"""
|
| 934 |
+
super().__init__()
|
| 935 |
+
self.transformer_dim = transformer_dim
|
| 936 |
+
self.transformer = transformer
|
| 937 |
+
|
| 938 |
+
self.num_multimask_outputs = num_multimask_outputs
|
| 939 |
+
|
| 940 |
+
self.iou_token = nn.Embedding(1, transformer_dim)
|
| 941 |
+
self.num_mask_tokens = num_multimask_outputs + 1
|
| 942 |
+
self.mask_tokens = nn.Embedding(self.num_mask_tokens, transformer_dim)
|
| 943 |
+
|
| 944 |
+
if image_encoder_type == 'swin_vit':
|
| 945 |
+
self.feat_shape = image_size / patch_size
|
| 946 |
+
self.output_upscaling = nn.Sequential(
|
| 947 |
+
nn.ConvTranspose3d(transformer_dim, transformer_dim // 4, kernel_size=2, stride=2),
|
| 948 |
+
nn.LayerNorm(
|
| 949 |
+
(transformer_dim // 4, int(self.feat_shape[0]), int(self.feat_shape[1]), int(self.feat_shape[2]))),
|
| 950 |
+
# swin
|
| 951 |
+
activation(),
|
| 952 |
+
nn.ConvTranspose3d(transformer_dim // 4, transformer_dim // 8, kernel_size=2, stride=2), # swin
|
| 953 |
+
# nn.Conv3d(transformer_dim // 4, transformer_dim // 8, kernel_size=3, stride=1, padding=1), # vit
|
| 954 |
+
activation(),
|
| 955 |
+
)
|
| 956 |
+
else:
|
| 957 |
+
self.feat_shape = image_size / patch_size * 2
|
| 958 |
+
self.output_upscaling = nn.Sequential(
|
| 959 |
+
nn.ConvTranspose3d(transformer_dim, transformer_dim // 4, kernel_size=2, stride=2),
|
| 960 |
+
nn.LayerNorm(
|
| 961 |
+
(transformer_dim // 4, int(self.feat_shape[0]), int(self.feat_shape[1]), int(self.feat_shape[2]))),
|
| 962 |
+
# vit
|
| 963 |
+
activation(),
|
| 964 |
+
nn.ConvTranspose3d(transformer_dim // 4, transformer_dim // 8, kernel_size=2, stride=2),
|
| 965 |
+
# nn.Conv3d(transformer_dim // 4, transformer_dim // 8, kernel_size=3, stride=1, padding=1),
|
| 966 |
+
activation(),
|
| 967 |
+
)
|
| 968 |
+
self.output_hypernetworks_mlps = nn.ModuleList(
|
| 969 |
+
[
|
| 970 |
+
MLP(transformer_dim, transformer_dim, transformer_dim // 8, 3)
|
| 971 |
+
for i in range(self.num_mask_tokens)
|
| 972 |
+
]
|
| 973 |
+
)
|
| 974 |
+
|
| 975 |
+
self.iou_prediction_head = MLP(
|
| 976 |
+
transformer_dim, iou_head_hidden_dim, self.num_mask_tokens, iou_head_depth
|
| 977 |
+
)
|
| 978 |
+
|
| 979 |
+
self.txt_align_upscaled_embedding = nn.Linear(768, 96)
|
| 980 |
+
|
| 981 |
+
def forward(
|
| 982 |
+
self,
|
| 983 |
+
image_embeddings: torch.Tensor,
|
| 984 |
+
text_embedding: Optional[torch.Tensor],
|
| 985 |
+
image_pe: torch.Tensor,
|
| 986 |
+
sparse_prompt_embeddings: torch.Tensor,
|
| 987 |
+
dense_prompt_embeddings: torch.Tensor,
|
| 988 |
+
multimask_output: bool,
|
| 989 |
+
) -> Tuple[torch.Tensor, torch.Tensor]:
|
| 990 |
+
"""
|
| 991 |
+
Predict masks given image and prompt embeddings.
|
| 992 |
+
|
| 993 |
+
Arguments:
|
| 994 |
+
image_embeddings (torch.Tensor): the embeddings from the image encoder
|
| 995 |
+
image_pe (torch.Tensor): positional encoding with the shape of image_embeddings
|
| 996 |
+
sparse_prompt_embeddings (torch.Tensor): the embeddings of the points and boxes
|
| 997 |
+
dense_prompt_embeddings (torch.Tensor): the embeddings of the mask inputs
|
| 998 |
+
multimask_output (bool): Whether to return multiple masks or a single
|
| 999 |
+
mask.
|
| 1000 |
+
|
| 1001 |
+
Returns:
|
| 1002 |
+
torch.Tensor: batched predicted masks
|
| 1003 |
+
torch.Tensor: batched predictions of mask quality
|
| 1004 |
+
"""
|
| 1005 |
+
# print('--------------decoder here--------------')
|
| 1006 |
+
masks, iou_pred = self.predict_masks(
|
| 1007 |
+
image_embeddings=image_embeddings,
|
| 1008 |
+
text_embedding=text_embedding,
|
| 1009 |
+
image_pe=image_pe,
|
| 1010 |
+
sparse_prompt_embeddings=sparse_prompt_embeddings,
|
| 1011 |
+
dense_prompt_embeddings=dense_prompt_embeddings,
|
| 1012 |
+
)
|
| 1013 |
+
|
| 1014 |
+
# Select the correct mask or masks for output
|
| 1015 |
+
if multimask_output:
|
| 1016 |
+
mask_slice = slice(1, None)
|
| 1017 |
+
else:
|
| 1018 |
+
mask_slice = slice(0, 1)
|
| 1019 |
+
masks = masks[:, mask_slice, :, :, :]
|
| 1020 |
+
iou_pred = iou_pred[:, mask_slice]
|
| 1021 |
+
|
| 1022 |
+
# Prepare output
|
| 1023 |
+
return masks, iou_pred
|
| 1024 |
+
|
| 1025 |
+
def predict_masks(
|
| 1026 |
+
self,
|
| 1027 |
+
image_embeddings: torch.Tensor,
|
| 1028 |
+
text_embedding: torch.Tensor,
|
| 1029 |
+
image_pe: torch.Tensor,
|
| 1030 |
+
sparse_prompt_embeddings: torch.Tensor,
|
| 1031 |
+
dense_prompt_embeddings: torch.Tensor,
|
| 1032 |
+
) -> Tuple[torch.Tensor, torch.Tensor]:
|
| 1033 |
+
"""Predicts masks. See 'forward' for more details."""
|
| 1034 |
+
# Concatenate output tokens
|
| 1035 |
+
output_tokens = torch.cat([self.iou_token.weight, self.mask_tokens.weight], dim=0)
|
| 1036 |
+
output_tokens = output_tokens.unsqueeze(0).expand(sparse_prompt_embeddings.size(0), -1, -1)
|
| 1037 |
+
tokens = torch.cat((output_tokens, sparse_prompt_embeddings), dim=1) # [2, 7=(5+2), 256]
|
| 1038 |
+
# Expand per-image data in batch direction to be per-mask
|
| 1039 |
+
if image_embeddings.shape[0] != tokens.shape[0]:
|
| 1040 |
+
src = torch.repeat_interleave(image_embeddings, tokens.shape[0], dim=0)
|
| 1041 |
+
else:
|
| 1042 |
+
src = image_embeddings
|
| 1043 |
+
|
| 1044 |
+
src = src + dense_prompt_embeddings
|
| 1045 |
+
pos_src = torch.repeat_interleave(image_pe, tokens.shape[0], dim=0)
|
| 1046 |
+
b, c, h, w, d = src.shape
|
| 1047 |
+
|
| 1048 |
+
# Run the transformer
|
| 1049 |
+
hs, src = self.transformer(src, pos_src, tokens)
|
| 1050 |
+
iou_token_out = hs[:, 0, :]
|
| 1051 |
+
mask_tokens_out = hs[:, 1: (1 + self.num_mask_tokens), :]
|
| 1052 |
+
|
| 1053 |
+
# Upscale mask embeddings and predict masks using the mask tokens
|
| 1054 |
+
src = src.transpose(1, 2).view(b, c, h, w, d)
|
| 1055 |
+
# print('src ', src.shape) # vit:[B, 768, 12, 12, 6], swin: [B, 6, 6, 3]
|
| 1056 |
+
upscaled_embedding = self.output_upscaling(src)
|
| 1057 |
+
hyper_in_list: List[torch.Tensor] = []
|
| 1058 |
+
for i in range(self.num_mask_tokens):
|
| 1059 |
+
hyper_in_list.append(self.output_hypernetworks_mlps[i](mask_tokens_out[:, i, :]))
|
| 1060 |
+
hyper_in = torch.stack(hyper_in_list, dim=1)
|
| 1061 |
+
b, c, h, w, d = upscaled_embedding.shape
|
| 1062 |
+
# print('hyper_in ', hyper_in.shape) # [2, 4, 96]
|
| 1063 |
+
# print('upscaled_embedding ', upscaled_embedding.shape) # [2, 96, 24, 24, 12]*
|
| 1064 |
+
masks = (hyper_in @ upscaled_embedding.view(b, c, h * w * d)).view(b, -1, h, w, d)
|
| 1065 |
+
# print('masks here ', masks.shape) # [2, 4, 24, 24, 12]
|
| 1066 |
+
|
| 1067 |
+
if text_embedding is not None:
|
| 1068 |
+
# text_embedding: B x 768, upscaled_embedding: B x c x h x w x d => B x 1 x h x w x d
|
| 1069 |
+
text_embedding_down = self.txt_align_upscaled_embedding(text_embedding).unsqueeze(dim=1)
|
| 1070 |
+
upscaled_embedding = upscaled_embedding.view(b, c, h * w * d)
|
| 1071 |
+
# print('text_embedding_down ', text_embedding_down.shape) # [2, 1, 96]
|
| 1072 |
+
# text_embedding_norm = F.normalize(text_embedding_down, dim=-1)
|
| 1073 |
+
# upscaled_embedding_norm = F.normalize(upscaled_embedding, dim=1)
|
| 1074 |
+
# sim = (text_embedding_norm @ upscaled_embedding_norm).view(b, -1, h, w, d)
|
| 1075 |
+
# print(text_embedding_down.shape, upscaled_embedding.shape)
|
| 1076 |
+
sim = (text_embedding_down @ upscaled_embedding).view(b, -1, h, w, d)
|
| 1077 |
+
# print('sim ', sim.shape) # [B, 1, 24, 24, 12]
|
| 1078 |
+
sim = sim.repeat(1, masks.shape[1], 1, 1, 1)
|
| 1079 |
+
# print('sim after', sim.shape) # [B, 4, 24, 24, 12]
|
| 1080 |
+
masks = masks + sim
|
| 1081 |
+
# Generate mask quality predictions
|
| 1082 |
+
iou_pred = self.iou_prediction_head(iou_token_out)
|
| 1083 |
+
|
| 1084 |
+
return masks, iou_pred
|
| 1085 |
+
|
| 1086 |
+
|
| 1087 |
+
# Lightly adapted from
|
| 1088 |
+
# https://github.com/facebookresearch/MaskFormer/blob/main/mask_former/modeling/transformer/transformer_predictor.py # noqa
|
| 1089 |
+
class MLP(nn.Module):
|
| 1090 |
+
def __init__(
|
| 1091 |
+
self,
|
| 1092 |
+
input_dim: int,
|
| 1093 |
+
hidden_dim: int,
|
| 1094 |
+
output_dim: int,
|
| 1095 |
+
num_layers: int,
|
| 1096 |
+
sigmoid_output: bool = False,
|
| 1097 |
+
) -> None:
|
| 1098 |
+
super().__init__()
|
| 1099 |
+
self.num_layers = num_layers
|
| 1100 |
+
h = [hidden_dim] * (num_layers - 1)
|
| 1101 |
+
self.layers = nn.ModuleList(
|
| 1102 |
+
nn.Linear(n, k) for n, k in zip([input_dim] + h, h + [output_dim])
|
| 1103 |
+
)
|
| 1104 |
+
self.sigmoid_output = sigmoid_output
|
| 1105 |
+
|
| 1106 |
+
def forward(self, x):
|
| 1107 |
+
for i, layer in enumerate(self.layers):
|
| 1108 |
+
x = F.relu(layer(x)) if i < self.num_layers - 1 else layer(x)
|
| 1109 |
+
if self.sigmoid_output:
|
| 1110 |
+
x = F.sigmoid(x)
|
| 1111 |
+
return x
|
| 1112 |
+
|
| 1113 |
+
|
| 1114 |
+
class Sam(nn.Module):
|
| 1115 |
+
mask_threshold: float = 0.0
|
| 1116 |
+
image_format: str = "RGB"
|
| 1117 |
+
|
| 1118 |
+
def __init__(
|
| 1119 |
+
self,
|
| 1120 |
+
image_encoder: ImageEncoderViT,
|
| 1121 |
+
prompt_encoder: PromptEncoder,
|
| 1122 |
+
mask_decoder: MaskDecoder,
|
| 1123 |
+
pixel_mean: List[float] = [123.675, 116.28, 103.53],
|
| 1124 |
+
pixel_std: List[float] = [58.395, 57.12, 57.375],
|
| 1125 |
+
) -> None:
|
| 1126 |
+
"""
|
| 1127 |
+
SAM predicts object masks from an image and input prompts.
|
| 1128 |
+
|
| 1129 |
+
Arguments:
|
| 1130 |
+
image_encoder (ImageEncoderViT): The backbone used to encode the
|
| 1131 |
+
image into image embeddings that allow for efficient mask prediction.
|
| 1132 |
+
prompt_encoder (PromptEncoder): Encodes various types of input prompts.
|
| 1133 |
+
mask_decoder (MaskDecoder): Predicts masks from the image embeddings
|
| 1134 |
+
and encoded prompts.
|
| 1135 |
+
pixel_mean (list(float)): Mean values for normalizing pixels in the input image.
|
| 1136 |
+
pixel_std (list(float)): Std values for normalizing pixels in the input image.
|
| 1137 |
+
"""
|
| 1138 |
+
super().__init__()
|
| 1139 |
+
self.image_encoder = image_encoder
|
| 1140 |
+
self.prompt_encoder = prompt_encoder
|
| 1141 |
+
self.mask_decoder = mask_decoder
|
| 1142 |
+
self.register_buffer("pixel_mean", torch.Tensor(pixel_mean).view(-1, 1, 1), False)
|
| 1143 |
+
self.register_buffer("pixel_std", torch.Tensor(pixel_std).view(-1, 1, 1), False)
|
| 1144 |
+
|
| 1145 |
+
@property
|
| 1146 |
+
def device(self) -> Any:
|
| 1147 |
+
return self.pixel_mean.device
|
| 1148 |
+
|
| 1149 |
+
@torch.no_grad()
|
| 1150 |
+
def forward(
|
| 1151 |
+
self,
|
| 1152 |
+
batched_input: List[Dict[str, Any]],
|
| 1153 |
+
multimask_output: bool,
|
| 1154 |
+
) -> List[Dict[str, torch.Tensor]]:
|
| 1155 |
+
"""
|
| 1156 |
+
Predicts masks end-to-end from provided images and prompts.
|
| 1157 |
+
If prompts are not known in advance, using SamPredictor is
|
| 1158 |
+
recommended over calling the model directly.
|
| 1159 |
+
|
| 1160 |
+
Arguments:
|
| 1161 |
+
batched_input (list(dict)): A list over input images, each a
|
| 1162 |
+
dictionary with the following keys. A prompt key can be
|
| 1163 |
+
excluded if it is not present.
|
| 1164 |
+
'image': The image as a torch tensor in 3xHxW format,
|
| 1165 |
+
already transformed for input to the model.
|
| 1166 |
+
'original_size': (tuple(int, int)) The original size of
|
| 1167 |
+
the image before transformation, as (H, W).
|
| 1168 |
+
'point_coords': (torch.Tensor) Batched point prompts for
|
| 1169 |
+
this image, with shape BxNx2. Already transformed to the
|
| 1170 |
+
input frame of the model.
|
| 1171 |
+
'point_labels': (torch.Tensor) Batched labels for point prompts,
|
| 1172 |
+
with shape BxN.
|
| 1173 |
+
'boxes': (torch.Tensor) Batched box inputs, with shape Bx4.
|
| 1174 |
+
Already transformed to the input frame of the model.
|
| 1175 |
+
'mask_inputs': (torch.Tensor) Batched mask inputs to the model,
|
| 1176 |
+
in the form Bx1xHxW.
|
| 1177 |
+
multimask_output (bool): Whether the model should predict multiple
|
| 1178 |
+
disambiguating masks, or return a single mask.
|
| 1179 |
+
|
| 1180 |
+
Returns:
|
| 1181 |
+
(list(dict)): A list over input images, where each element is
|
| 1182 |
+
as dictionary with the following keys.
|
| 1183 |
+
'masks': (torch.Tensor) Batched binary mask predictions,
|
| 1184 |
+
with shape BxCxHxW, where B is the number of input prompts,
|
| 1185 |
+
C is determined by multimask_output, and (H, W) is the
|
| 1186 |
+
original size of the image.
|
| 1187 |
+
'iou_predictions': (torch.Tensor) The model's predictions
|
| 1188 |
+
of mask quality, in shape BxC.
|
| 1189 |
+
'low_res_logits': (torch.Tensor) Low resolution logits with
|
| 1190 |
+
shape BxCxHxW, where H=W=256. Can be passed as mask input
|
| 1191 |
+
to subsequent iterations of prediction.
|
| 1192 |
+
"""
|
| 1193 |
+
input_images = torch.stack([self.preprocess(x["image"]) for x in batched_input], dim=0)
|
| 1194 |
+
image_embeddings = self.image_encoder(input_images)
|
| 1195 |
+
|
| 1196 |
+
outputs = []
|
| 1197 |
+
for image_record, curr_embedding in zip(batched_input, image_embeddings):
|
| 1198 |
+
if "point_coords" in image_record:
|
| 1199 |
+
points = (image_record["point_coords"], image_record["point_labels"])
|
| 1200 |
+
else:
|
| 1201 |
+
points = None
|
| 1202 |
+
sparse_embeddings, dense_embeddings = self.prompt_encoder(
|
| 1203 |
+
points=points,
|
| 1204 |
+
boxes=image_record.get("boxes", None),
|
| 1205 |
+
masks=image_record.get("mask_inputs", None),
|
| 1206 |
+
)
|
| 1207 |
+
low_res_masks, iou_predictions = self.mask_decoder(
|
| 1208 |
+
image_embeddings=curr_embedding.unsqueeze(0),
|
| 1209 |
+
image_pe=self.prompt_encoder.get_dense_pe(),
|
| 1210 |
+
sparse_prompt_embeddings=sparse_embeddings,
|
| 1211 |
+
dense_prompt_embeddings=dense_embeddings,
|
| 1212 |
+
multimask_output=multimask_output,
|
| 1213 |
+
)
|
| 1214 |
+
masks = self.postprocess_masks(
|
| 1215 |
+
low_res_masks,
|
| 1216 |
+
input_size=image_record["image"].shape[-2:],
|
| 1217 |
+
original_size=image_record["original_size"],
|
| 1218 |
+
)
|
| 1219 |
+
masks = masks > self.mask_threshold
|
| 1220 |
+
outputs.append(
|
| 1221 |
+
{
|
| 1222 |
+
"masks": masks,
|
| 1223 |
+
"iou_predictions": iou_predictions,
|
| 1224 |
+
"low_res_logits": low_res_masks,
|
| 1225 |
+
}
|
| 1226 |
+
)
|
| 1227 |
+
return outputs
|
| 1228 |
+
|
| 1229 |
+
def postprocess_masks(
|
| 1230 |
+
self,
|
| 1231 |
+
masks: torch.Tensor,
|
| 1232 |
+
input_size: Tuple[int, ...],
|
| 1233 |
+
original_size: Tuple[int, ...],
|
| 1234 |
+
) -> torch.Tensor:
|
| 1235 |
+
"""
|
| 1236 |
+
Remove padding and upscale masks to the original image size.
|
| 1237 |
+
|
| 1238 |
+
Arguments:
|
| 1239 |
+
masks (torch.Tensor): Batched masks from the mask_decoder,
|
| 1240 |
+
in BxCxHxW format.
|
| 1241 |
+
input_size (tuple(int, int)): The size of the image input to the
|
| 1242 |
+
model, in (H, W) format. Used to remove padding.
|
| 1243 |
+
original_size (tuple(int, int)): The original size of the image
|
| 1244 |
+
before resizing for input to the model, in (H, W) format.
|
| 1245 |
+
|
| 1246 |
+
Returns:
|
| 1247 |
+
(torch.Tensor): Batched masks in BxCxHxW format, where (H, W)
|
| 1248 |
+
is given by original_size.
|
| 1249 |
+
"""
|
| 1250 |
+
masks = F.interpolate(
|
| 1251 |
+
masks,
|
| 1252 |
+
(self.image_encoder.img_size, self.image_encoder.img_size),
|
| 1253 |
+
mode="bilinear",
|
| 1254 |
+
align_corners=False,
|
| 1255 |
+
)
|
| 1256 |
+
masks = masks[..., : input_size[0], : input_size[1]]
|
| 1257 |
+
masks = F.interpolate(masks, original_size, mode="bilinear", align_corners=False)
|
| 1258 |
+
return masks
|
| 1259 |
+
|
| 1260 |
+
def preprocess(self, x: torch.Tensor) -> torch.Tensor:
|
| 1261 |
+
"""Normalize pixel values and pad to a square input."""
|
| 1262 |
+
# Normalize colors
|
| 1263 |
+
# TODO
|
| 1264 |
+
x = (x - self.pixel_mean) / self.pixel_std
|
| 1265 |
+
|
| 1266 |
+
# Pad
|
| 1267 |
+
h, w = x.shape[-2:]
|
| 1268 |
+
padh = self.image_encoder.img_size - h
|
| 1269 |
+
padw = self.image_encoder.img_size - w
|
| 1270 |
+
x = F.pad(x, (0, padw, 0, padh))
|
| 1271 |
+
return x
|
| 1272 |
+
|
| 1273 |
+
|
| 1274 |
+
"""
|
| 1275 |
+
Examples::
|
| 1276 |
+
# for 3D single channel input with size (96,96,96), 4-channel output and feature size of 48.
|
| 1277 |
+
>>> net = SwinUNETR(img_size=(96,96,96), in_channels=1, out_channels=4, feature_size=48)
|
| 1278 |
+
# for 3D 4-channel input with size (128,128,128), 3-channel output and (2,4,2,2) layers in each stage.
|
| 1279 |
+
>>> net = SwinUNETR(img_size=(128,128,128), in_channels=4, out_channels=3, depths=(2,4,2,2))
|
| 1280 |
+
# for 2D single channel input with size (96,96), 2-channel output and gradient checkpointing.
|
| 1281 |
+
>>> net = SwinUNETR(img_size=(96,96), in_channels=3, out_channels=2, use_checkpoint=True, spatial_dims=2)
|
| 1282 |
+
"""
|
| 1283 |
+
|
| 1284 |
+
|
| 1285 |
+
def build_sam_vit_3d(args, checkpoint=None):
|
| 1286 |
+
print('build_sam_vit_3d...')
|
| 1287 |
+
return _build_sam(
|
| 1288 |
+
image_encoder_type='vit',
|
| 1289 |
+
embed_dim=768,
|
| 1290 |
+
patch_size=args.patch_size,
|
| 1291 |
+
checkpoint=checkpoint,
|
| 1292 |
+
image_size=args.image_size,
|
| 1293 |
+
)
|
| 1294 |
+
|
| 1295 |
+
|
| 1296 |
+
sam_model_registry = {
|
| 1297 |
+
"vit": build_sam_vit_3d,
|
| 1298 |
+
}
|
| 1299 |
+
|
| 1300 |
+
|
| 1301 |
+
def _build_sam(
|
| 1302 |
+
image_encoder_type,
|
| 1303 |
+
embed_dim,
|
| 1304 |
+
patch_size,
|
| 1305 |
+
checkpoint,
|
| 1306 |
+
image_size,
|
| 1307 |
+
):
|
| 1308 |
+
mlp_dim = 3072
|
| 1309 |
+
num_layers = 12
|
| 1310 |
+
num_heads = 12
|
| 1311 |
+
pos_embed = 'perceptron'
|
| 1312 |
+
dropout_rate = 0.0
|
| 1313 |
+
|
| 1314 |
+
image_encoder = ViT(
|
| 1315 |
+
in_channels=1,
|
| 1316 |
+
img_size=image_size,
|
| 1317 |
+
patch_size=patch_size,
|
| 1318 |
+
hidden_size=embed_dim,
|
| 1319 |
+
mlp_dim=mlp_dim,
|
| 1320 |
+
num_layers=num_layers,
|
| 1321 |
+
num_heads=num_heads,
|
| 1322 |
+
pos_embed=pos_embed,
|
| 1323 |
+
classification=False,
|
| 1324 |
+
dropout_rate=dropout_rate,
|
| 1325 |
+
)
|
| 1326 |
+
image_embedding_size = [int(item) for item in (np.array(image_size) / np.array(patch_size))]
|
| 1327 |
+
|
| 1328 |
+
if checkpoint is not None:
|
| 1329 |
+
with open(checkpoint, "rb") as f:
|
| 1330 |
+
state_dict = torch.load(f, map_location='cpu')['state_dict']
|
| 1331 |
+
encoder_dict = {k.replace('model.encoder.', ''): v for k, v in state_dict.items() if 'model.encoder.' in k}
|
| 1332 |
+
image_encoder.load_state_dict(encoder_dict)
|
| 1333 |
+
print(f'===> image_encoder.load_param: {checkpoint}')
|
| 1334 |
+
sam = Sam(
|
| 1335 |
+
image_encoder=image_encoder,
|
| 1336 |
+
prompt_encoder=PromptEncoder(
|
| 1337 |
+
embed_dim=embed_dim,
|
| 1338 |
+
image_embedding_size=image_embedding_size,
|
| 1339 |
+
input_image_size=image_size,
|
| 1340 |
+
mask_in_chans=16,
|
| 1341 |
+
),
|
| 1342 |
+
mask_decoder=MaskDecoder(
|
| 1343 |
+
image_encoder_type=image_encoder_type,
|
| 1344 |
+
num_multimask_outputs=3,
|
| 1345 |
+
transformer=TwoWayTransformer(
|
| 1346 |
+
depth=2,
|
| 1347 |
+
embedding_dim=embed_dim,
|
| 1348 |
+
mlp_dim=2048,
|
| 1349 |
+
num_heads=8,
|
| 1350 |
+
),
|
| 1351 |
+
transformer_dim=embed_dim,
|
| 1352 |
+
iou_head_depth=3,
|
| 1353 |
+
iou_head_hidden_dim=256,
|
| 1354 |
+
image_size=np.array(image_size),
|
| 1355 |
+
patch_size=np.array(patch_size),
|
| 1356 |
+
),
|
| 1357 |
+
pixel_mean=[123.675, 116.28, 103.53],
|
| 1358 |
+
pixel_std=[58.395, 57.12, 57.375],
|
| 1359 |
+
)
|
| 1360 |
+
sam.eval()
|
| 1361 |
+
return sam
|
| 1362 |
+
|
| 1363 |
+
class SegVol(nn.Module):
|
| 1364 |
+
def __init__(self,
|
| 1365 |
+
image_encoder,
|
| 1366 |
+
mask_decoder,
|
| 1367 |
+
prompt_encoder,
|
| 1368 |
+
roi_size,
|
| 1369 |
+
patch_size,
|
| 1370 |
+
):
|
| 1371 |
+
super().__init__()
|
| 1372 |
+
self.image_encoder = image_encoder
|
| 1373 |
+
self.mask_decoder = mask_decoder
|
| 1374 |
+
self.prompt_encoder = prompt_encoder
|
| 1375 |
+
self.feat_shape = np.array(roi_size)/np.array(patch_size)
|
| 1376 |
+
|
| 1377 |
+
def forward(self, image, text_emb=None, text=None, boxes=None, points=None):
|
| 1378 |
+
bs = image.shape[0]
|
| 1379 |
+
img_shape = (image.shape[2], image.shape[3], image.shape[4])
|
| 1380 |
+
image_embedding, _ = self.image_encoder(image)
|
| 1381 |
+
|
| 1382 |
+
image_embedding = image_embedding.transpose(1, 2).view(bs, -1,
|
| 1383 |
+
int(self.feat_shape[0]), int(self.feat_shape[1]), int(self.feat_shape[2]))
|
| 1384 |
+
|
| 1385 |
+
logits = self.forward_decoder(image_embedding, img_shape, text_emb=text_emb, text=text, boxes=boxes, points=points)
|
| 1386 |
+
|
| 1387 |
+
return logits
|
| 1388 |
+
|
| 1389 |
+
def forward_decoder(self, image_embedding, img_shape, text_emb=None, text=None, boxes=None, points=None):
|
| 1390 |
+
text_embedding = text_emb
|
| 1391 |
+
sparse_embeddings, dense_embeddings = self.prompt_encoder(
|
| 1392 |
+
points=None,
|
| 1393 |
+
boxes=None,
|
| 1394 |
+
masks=None,
|
| 1395 |
+
text_embedding=text_embedding,
|
| 1396 |
+
)
|
| 1397 |
+
|
| 1398 |
+
dense_pe = self.prompt_encoder.get_dense_pe()
|
| 1399 |
+
|
| 1400 |
+
low_res_masks, _ = self.mask_decoder(
|
| 1401 |
+
image_embeddings=image_embedding,
|
| 1402 |
+
text_embedding = text_embedding,
|
| 1403 |
+
image_pe=dense_pe,
|
| 1404 |
+
sparse_prompt_embeddings=sparse_embeddings,
|
| 1405 |
+
dense_prompt_embeddings=dense_embeddings,
|
| 1406 |
+
multimask_output=False,
|
| 1407 |
+
)
|
| 1408 |
+
logits = F.interpolate(low_res_masks, size=img_shape, mode='trilinear', align_corners=False)
|
| 1409 |
+
|
| 1410 |
+
return logits
|
| 1411 |
+
|
| 1412 |
+
|
| 1413 |
+
def build_segmentation_module(config, **kwargs):
|
| 1414 |
+
segmentation_module = getattr(config, 'segmentation_module')
|
| 1415 |
+
if 'segvol' in segmentation_module.lower():
|
| 1416 |
+
sam_model = sam_model_registry['vit'](args=config, checkpoint=None)
|
| 1417 |
+
seg_model = SegVol(
|
| 1418 |
+
image_encoder=sam_model.image_encoder,
|
| 1419 |
+
mask_decoder=sam_model.mask_decoder,
|
| 1420 |
+
prompt_encoder=sam_model.prompt_encoder,
|
| 1421 |
+
roi_size=config.image_size,
|
| 1422 |
+
patch_size=config.patch_size,
|
| 1423 |
+
)
|
| 1424 |
+
return seg_model
|
| 1425 |
+
else:
|
| 1426 |
+
raise ValueError(f'Unknown segmentation module: {segmentation_module}')
|
| 1427 |
+
|
| 1428 |
+
|
| 1429 |
+
class IdentityMap(nn.Module):
|
| 1430 |
+
def __init__(self):
|
| 1431 |
+
super().__init__()
|
| 1432 |
+
|
| 1433 |
+
def forward(self, x, *args, **kwargs):
|
| 1434 |
+
return x
|
| 1435 |
+
|
| 1436 |
+
@property
|
| 1437 |
+
def config(self):
|
| 1438 |
+
return {"mm_projector_type": 'identity'}
|
| 1439 |
+
|
| 1440 |
+
|
| 1441 |
+
|
| 1442 |
+
class SpatialPoolingProjector(nn.Module):
|
| 1443 |
+
def __init__(self, image_size, patch_size, in_dim, out_dim, layer_type, layer_num, pooling_type='spatial', pooling_size=2):
|
| 1444 |
+
super().__init__()
|
| 1445 |
+
self.in_dim = in_dim
|
| 1446 |
+
self.pooling_size = pooling_size
|
| 1447 |
+
|
| 1448 |
+
self.num_patches_pre = [img // pch for img, pch in zip(image_size, patch_size)]
|
| 1449 |
+
self.num_patches_post = [num // pooling_size for num in self.num_patches_pre]
|
| 1450 |
+
|
| 1451 |
+
if layer_type == 'linear':
|
| 1452 |
+
depth = int(layer_num)
|
| 1453 |
+
modules = [nn.Linear(in_dim, out_dim)]
|
| 1454 |
+
for _ in range(1, depth):
|
| 1455 |
+
modules.append(nn.Linear(out_dim, out_dim))
|
| 1456 |
+
self.projector = nn.Sequential(*modules)
|
| 1457 |
+
elif layer_type == 'mlp':
|
| 1458 |
+
depth = int(layer_num)
|
| 1459 |
+
modules = [nn.Linear(in_dim, out_dim)]
|
| 1460 |
+
for _ in range(1, depth):
|
| 1461 |
+
modules.append(nn.GELU())
|
| 1462 |
+
modules.append(nn.Linear(out_dim, out_dim))
|
| 1463 |
+
self.projector = nn.Sequential(*modules)
|
| 1464 |
+
else:
|
| 1465 |
+
print("Projector error!")
|
| 1466 |
+
|
| 1467 |
+
self.pooling_type = pooling_type
|
| 1468 |
+
|
| 1469 |
+
def forward(self, x):
|
| 1470 |
+
B = x.shape[0] # B*N*D
|
| 1471 |
+
|
| 1472 |
+
if self.pooling_type == 'spatial':
|
| 1473 |
+
to_3d = Rearrange("b (p1 p2 p3) d -> b d p1 p2 p3", b=B, d=self.in_dim, p1=self.num_patches_pre[0], p2=self.num_patches_pre[1], p3=self.num_patches_pre[2])
|
| 1474 |
+
x = to_3d(x)
|
| 1475 |
+
x = F.avg_pool3d(x, kernel_size=self.pooling_size, stride=self.pooling_size)
|
| 1476 |
+
to_seq = Rearrange("b d p1 p2 p3 -> b (p1 p2 p3) d", b=B, d=self.in_dim, p1=self.num_patches_post[0], p2=self.num_patches_post[1], p3=self.num_patches_post[2])
|
| 1477 |
+
x = to_seq(x)
|
| 1478 |
+
elif self.pooling_type == 'sequence':
|
| 1479 |
+
x = x.permute(0, 2, 1) #b d n
|
| 1480 |
+
x = F.avg_pool1d(x, kernel_size=self.pooling_size**3, stride=self.pooling_size**3)
|
| 1481 |
+
x = x.permute(0, 2, 1) #b n d
|
| 1482 |
+
|
| 1483 |
+
x = rearrange(x, "b n d -> (b n) d")
|
| 1484 |
+
x = self.projector(x)
|
| 1485 |
+
x = rearrange(x, "(b n) d -> b n d", b=B)
|
| 1486 |
+
|
| 1487 |
+
return x
|
| 1488 |
+
|
| 1489 |
+
@property
|
| 1490 |
+
def proj_out_num(self):
|
| 1491 |
+
num = 1
|
| 1492 |
+
for n in self.num_patches_post:
|
| 1493 |
+
num *= n
|
| 1494 |
+
return num
|
| 1495 |
+
|
| 1496 |
+
|
| 1497 |
+
class Minigpt(nn.Module):
|
| 1498 |
+
def __init__(self, config=None):
|
| 1499 |
+
super(Minigpt, self).__init__()
|
| 1500 |
+
# c*4 is the input size, and c is the output size for the linear layer
|
| 1501 |
+
inc, ouc = config.mm_hidden_size, config.hidden_size
|
| 1502 |
+
self.linear = nn.Linear(inc * 4, ouc)
|
| 1503 |
+
|
| 1504 |
+
def forward(self, x):
|
| 1505 |
+
# x is the input tensor with shape [b, num_tokens, c]
|
| 1506 |
+
b, num_tokens, c = x.shape
|
| 1507 |
+
|
| 1508 |
+
# Check if num_tokens is divisible by 4
|
| 1509 |
+
if num_tokens % 4 != 0:
|
| 1510 |
+
raise ValueError("num_tokens must be divisible by 4")
|
| 1511 |
+
|
| 1512 |
+
# Reshape x to [b, num_tokens/4, c*4]
|
| 1513 |
+
x = x.view(b, num_tokens // 4, c * 4)
|
| 1514 |
+
|
| 1515 |
+
# Apply the linear transformation
|
| 1516 |
+
x = self.linear(x)
|
| 1517 |
+
return x
|
| 1518 |
+
|
| 1519 |
+
|
| 1520 |
+
class Vanilla(nn.Module):
|
| 1521 |
+
def __init__(self, config=None):
|
| 1522 |
+
super(Vanilla, self).__init__()
|
| 1523 |
+
# c*4 is the input size, and c is the output size for the linear layer
|
| 1524 |
+
inc, ouc = config.mm_hidden_size, config.hidden_size
|
| 1525 |
+
self.linear = nn.Linear(inc * 4, ouc)
|
| 1526 |
+
|
| 1527 |
+
def forward(self, x):
|
| 1528 |
+
b, num_tokens, c = x.shape
|
| 1529 |
+
|
| 1530 |
+
# Check if num_tokens is divisible by 4
|
| 1531 |
+
if num_tokens % 4 != 0:
|
| 1532 |
+
raise ValueError("num_tokens must be divisible by 4")
|
| 1533 |
+
|
| 1534 |
+
# First, reshape to [b, num_tokens//4, 4, c]
|
| 1535 |
+
x = x.view(b, num_tokens // 4, 4, c)
|
| 1536 |
+
|
| 1537 |
+
# Then, permute to interleave the tokens
|
| 1538 |
+
x = x.permute(0, 1, 3, 2).contiguous()
|
| 1539 |
+
|
| 1540 |
+
# Finally, reshape to [b, num_tokens//4, c*4] to interleave features of 4 tokens
|
| 1541 |
+
x = x.view(b, num_tokens // 4, c * 4)
|
| 1542 |
+
|
| 1543 |
+
# Apply the linear transformation
|
| 1544 |
+
x = self.linear(x)
|
| 1545 |
+
return x
|
| 1546 |
+
|
| 1547 |
+
|
| 1548 |
+
def build_mm_projector(config, delay_load=False, **kwargs):
|
| 1549 |
+
projector_type = getattr(config, 'mm_projector_type')
|
| 1550 |
+
|
| 1551 |
+
if projector_type == 'linear':
|
| 1552 |
+
return nn.Linear(config.mm_hidden_size, config.hidden_size)
|
| 1553 |
+
|
| 1554 |
+
|
| 1555 |
+
elif projector_type == 'spp':
|
| 1556 |
+
return SpatialPoolingProjector(image_size=config.image_size,
|
| 1557 |
+
patch_size=config.patch_size,
|
| 1558 |
+
in_dim=config.mm_hidden_size,
|
| 1559 |
+
out_dim=config.hidden_size,
|
| 1560 |
+
layer_type=config.proj_layer_type,
|
| 1561 |
+
layer_num=config.proj_layer_num,
|
| 1562 |
+
pooling_type=config.proj_pooling_type,
|
| 1563 |
+
pooling_size=config.proj_pooling_size)
|
| 1564 |
+
|
| 1565 |
+
|
| 1566 |
+
elif projector_type == 'identity':
|
| 1567 |
+
return IdentityMap()
|
| 1568 |
+
else:
|
| 1569 |
+
raise ValueError(f'Unknown projector type: {projector_type}')
|
| 1570 |
+
|
| 1571 |
+
|
| 1572 |
+
|
| 1573 |
+
class myViT(nn.Module):
|
| 1574 |
+
"""
|
| 1575 |
+
Vision Transformer (ViT), based on: "Dosovitskiy et al.,
|
| 1576 |
+
An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale <https://arxiv.org/abs/2010.11929>"
|
| 1577 |
+
|
| 1578 |
+
ViT supports Torchscript but only works for Pytorch after 1.8.
|
| 1579 |
+
"""
|
| 1580 |
+
|
| 1581 |
+
def __init__(
|
| 1582 |
+
self,
|
| 1583 |
+
in_channels: int,
|
| 1584 |
+
img_size: Sequence[int] | int,
|
| 1585 |
+
patch_size: Sequence[int] | int,
|
| 1586 |
+
hidden_size: int = 768,
|
| 1587 |
+
mlp_dim: int = 3072,
|
| 1588 |
+
num_layers: int = 12,
|
| 1589 |
+
num_heads: int = 12,
|
| 1590 |
+
pos_embed: str = "conv",
|
| 1591 |
+
classification: bool = False,
|
| 1592 |
+
num_classes: int = 2,
|
| 1593 |
+
dropout_rate: float = 0.0,
|
| 1594 |
+
spatial_dims: int = 3,
|
| 1595 |
+
post_activation="Tanh",
|
| 1596 |
+
qkv_bias: bool = False,
|
| 1597 |
+
save_attn: bool = False,
|
| 1598 |
+
) -> None:
|
| 1599 |
+
"""
|
| 1600 |
+
Args:
|
| 1601 |
+
in_channels (int): dimension of input channels.
|
| 1602 |
+
img_size (Union[Sequence[int], int]): dimension of input image.
|
| 1603 |
+
patch_size (Union[Sequence[int], int]): dimension of patch size.
|
| 1604 |
+
hidden_size (int, optional): dimension of hidden layer. Defaults to 768.
|
| 1605 |
+
mlp_dim (int, optional): dimension of feedforward layer. Defaults to 3072.
|
| 1606 |
+
num_layers (int, optional): number of transformer blocks. Defaults to 12.
|
| 1607 |
+
num_heads (int, optional): number of attention heads. Defaults to 12.
|
| 1608 |
+
pos_embed (str, optional): position embedding layer type. Defaults to "conv".
|
| 1609 |
+
classification (bool, optional): bool argument to determine if classification is used. Defaults to False.
|
| 1610 |
+
num_classes (int, optional): number of classes if classification is used. Defaults to 2.
|
| 1611 |
+
dropout_rate (float, optional): faction of the input units to drop. Defaults to 0.0.
|
| 1612 |
+
spatial_dims (int, optional): number of spatial dimensions. Defaults to 3.
|
| 1613 |
+
post_activation (str, optional): add a final acivation function to the classification head
|
| 1614 |
+
when `classification` is True. Default to "Tanh" for `nn.Tanh()`.
|
| 1615 |
+
Set to other values to remove this function.
|
| 1616 |
+
qkv_bias (bool, optional): apply bias to the qkv linear layer in self attention block. Defaults to False.
|
| 1617 |
+
save_attn (bool, optional): to make accessible the attention in self attention block. Defaults to False.
|
| 1618 |
+
|
| 1619 |
+
Examples::
|
| 1620 |
+
|
| 1621 |
+
# for single channel input with image size of (96,96,96), conv position embedding and segmentation backbone
|
| 1622 |
+
>>> net = ViT(in_channels=1, img_size=(96,96,96), pos_embed='conv')
|
| 1623 |
+
|
| 1624 |
+
# for 3-channel with image size of (128,128,128), 24 layers and classification backbone
|
| 1625 |
+
>>> net = ViT(in_channels=3, img_size=(128,128,128), pos_embed='conv', classification=True)
|
| 1626 |
+
|
| 1627 |
+
# for 3-channel with image size of (224,224), 12 layers and classification backbone
|
| 1628 |
+
>>> net = ViT(in_channels=3, img_size=(224,224), pos_embed='conv', classification=True, spatial_dims=2)
|
| 1629 |
+
|
| 1630 |
+
"""
|
| 1631 |
+
|
| 1632 |
+
super().__init__()
|
| 1633 |
+
|
| 1634 |
+
if not (0 <= dropout_rate <= 1):
|
| 1635 |
+
raise ValueError("dropout_rate should be between 0 and 1.")
|
| 1636 |
+
|
| 1637 |
+
if hidden_size % num_heads != 0:
|
| 1638 |
+
raise ValueError("hidden_size should be divisible by num_heads.")
|
| 1639 |
+
self.hidden_size = hidden_size
|
| 1640 |
+
self.classification = classification
|
| 1641 |
+
self.patch_embedding = PatchEmbeddingBlock(
|
| 1642 |
+
in_channels=in_channels,
|
| 1643 |
+
img_size=img_size,
|
| 1644 |
+
patch_size=patch_size,
|
| 1645 |
+
hidden_size=hidden_size,
|
| 1646 |
+
num_heads=num_heads,
|
| 1647 |
+
pos_embed=pos_embed,
|
| 1648 |
+
dropout_rate=dropout_rate,
|
| 1649 |
+
spatial_dims=spatial_dims,
|
| 1650 |
+
)
|
| 1651 |
+
self.blocks = nn.ModuleList(
|
| 1652 |
+
[
|
| 1653 |
+
TransformerBlock(hidden_size, mlp_dim, num_heads, dropout_rate, qkv_bias, save_attn)
|
| 1654 |
+
for i in range(num_layers)
|
| 1655 |
+
]
|
| 1656 |
+
)
|
| 1657 |
+
self.norm = nn.LayerNorm(hidden_size)
|
| 1658 |
+
if self.classification:
|
| 1659 |
+
self.cls_token = nn.Parameter(torch.zeros(1, 1, hidden_size))
|
| 1660 |
+
# if post_activation == "Tanh":
|
| 1661 |
+
# self.classification_head = nn.Sequential(nn.Linear(hidden_size, num_classes), nn.Tanh())
|
| 1662 |
+
# else:
|
| 1663 |
+
# self.classification_head = nn.Linear(hidden_size, num_classes) # type: ignore
|
| 1664 |
+
|
| 1665 |
+
def forward(self, x):
|
| 1666 |
+
x = self.patch_embedding(x)
|
| 1667 |
+
if hasattr(self, "cls_token"):
|
| 1668 |
+
cls_token = self.cls_token.expand(x.shape[0], -1, -1)
|
| 1669 |
+
x = torch.cat((cls_token, x), dim=1)
|
| 1670 |
+
hidden_states_out = []
|
| 1671 |
+
for blk in self.blocks:
|
| 1672 |
+
x = blk(x)
|
| 1673 |
+
hidden_states_out.append(x)
|
| 1674 |
+
x = self.norm(x)
|
| 1675 |
+
# if hasattr(self, "classification_head"):
|
| 1676 |
+
# x = self.classification_head(x[:, 0])
|
| 1677 |
+
return x, hidden_states_out
|
| 1678 |
+
|
| 1679 |
+
|
| 1680 |
+
class ViT3DTower(nn.Module):
|
| 1681 |
+
def __init__(self, config):
|
| 1682 |
+
super().__init__()
|
| 1683 |
+
self.config = config
|
| 1684 |
+
self.select_layer = config.vision_select_layer
|
| 1685 |
+
self.select_feature = config.vision_select_feature
|
| 1686 |
+
|
| 1687 |
+
self.vision_tower = myViT(
|
| 1688 |
+
in_channels=self.config.image_channel,
|
| 1689 |
+
img_size=self.config.image_size,
|
| 1690 |
+
patch_size=self.config.patch_size,
|
| 1691 |
+
pos_embed="perceptron",
|
| 1692 |
+
spatial_dims=len(self.config.patch_size),
|
| 1693 |
+
classification=True,
|
| 1694 |
+
)
|
| 1695 |
+
|
| 1696 |
+
def forward(self, images):
|
| 1697 |
+
last_feature, hidden_states = self.vision_tower(images)
|
| 1698 |
+
if self.select_layer == -1:
|
| 1699 |
+
image_features = last_feature
|
| 1700 |
+
elif self.select_layer < -1:
|
| 1701 |
+
image_features = hidden_states[self.select_feature]
|
| 1702 |
+
else:
|
| 1703 |
+
raise ValueError(f'Unexpected select layer: {self.select_layer}')
|
| 1704 |
+
|
| 1705 |
+
if self.select_feature == 'patch':
|
| 1706 |
+
image_features = image_features[:, 1:]
|
| 1707 |
+
elif self.select_feature == 'cls_patch':
|
| 1708 |
+
image_features = image_features
|
| 1709 |
+
else:
|
| 1710 |
+
raise ValueError(f'Unexpected select feature: {self.select_feature}')
|
| 1711 |
+
|
| 1712 |
+
return image_features
|
| 1713 |
+
|
| 1714 |
+
@property
|
| 1715 |
+
def dtype(self):
|
| 1716 |
+
return self.vision_tower.dtype
|
| 1717 |
+
|
| 1718 |
+
@property
|
| 1719 |
+
def device(self):
|
| 1720 |
+
return self.vision_tower.device
|
| 1721 |
+
|
| 1722 |
+
@property
|
| 1723 |
+
def hidden_size(self):
|
| 1724 |
+
return self.vision_tower.hidden_size
|
| 1725 |
+
|
| 1726 |
+
|
| 1727 |
+
def build_vision_tower(config, **kwargs):
|
| 1728 |
+
vision_tower = getattr(config, 'vision_tower', None)
|
| 1729 |
+
if 'vit3d' in vision_tower.lower():
|
| 1730 |
+
return ViT3DTower(config, **kwargs)
|
| 1731 |
+
else:
|
| 1732 |
+
raise ValueError(f'Unknown vision tower: {vision_tower}')
|
| 1733 |
+
|
| 1734 |
+
class LamedMetaModel:
|
| 1735 |
+
def __init__(self, config):
|
| 1736 |
+
super(LamedMetaModel, self).__init__(config)
|
| 1737 |
+
|
| 1738 |
+
self.config = config
|
| 1739 |
+
self.seg_enable = False
|
| 1740 |
+
|
| 1741 |
+
if hasattr(config, "vision_tower"):
|
| 1742 |
+
self.vision_tower = build_vision_tower(config)
|
| 1743 |
+
self.mm_projector = build_mm_projector(config)
|
| 1744 |
+
|
| 1745 |
+
if hasattr(config, "segmentation_module") and config.segmentation_module is not None:
|
| 1746 |
+
self.seg_enable = True
|
| 1747 |
+
self.seg_module = build_segmentation_module(config)
|
| 1748 |
+
|
| 1749 |
+
self.seg_projector = nn.Sequential(
|
| 1750 |
+
nn.Linear(config.hidden_size, config.hidden_size),
|
| 1751 |
+
nn.ReLU(inplace=True),
|
| 1752 |
+
nn.Linear(config.hidden_size, config.mm_hidden_size),
|
| 1753 |
+
nn.Dropout(0.1),
|
| 1754 |
+
)
|
| 1755 |
+
|
| 1756 |
+
self.dice_loss = BinaryDiceLoss()
|
| 1757 |
+
self.bce_loss = BCELoss()
|
| 1758 |
+
|
| 1759 |
+
def get_vision_tower(self):
|
| 1760 |
+
vision_tower = getattr(self, 'vision_tower', None)
|
| 1761 |
+
return vision_tower
|
| 1762 |
+
|
| 1763 |
+
def initialize_vision_modules(self, model_args):
|
| 1764 |
+
self.config.image_channel = model_args.image_channel
|
| 1765 |
+
self.config.image_size = model_args.image_size
|
| 1766 |
+
self.config.patch_size = model_args.patch_size
|
| 1767 |
+
|
| 1768 |
+
self.config.vision_tower = model_args.vision_tower
|
| 1769 |
+
self.config.vision_select_layer = model_args.vision_select_layer
|
| 1770 |
+
self.config.vision_select_feature = model_args.vision_select_feature
|
| 1771 |
+
|
| 1772 |
+
self.config.mm_projector_type = model_args.mm_projector_type
|
| 1773 |
+
self.config.proj_layer_type = model_args.proj_layer_type
|
| 1774 |
+
self.config.proj_layer_num = model_args.proj_layer_num
|
| 1775 |
+
self.config.proj_pooling_type = model_args.proj_pooling_type
|
| 1776 |
+
self.config.proj_pooling_size = model_args.proj_pooling_size
|
| 1777 |
+
|
| 1778 |
+
# vision tower
|
| 1779 |
+
if self.get_vision_tower() is None:
|
| 1780 |
+
self.vision_tower = build_vision_tower(self.config)
|
| 1781 |
+
# If you have a more robust vision encoder, try freezing the vision tower by requires_grad_(False)
|
| 1782 |
+
|
| 1783 |
+
|
| 1784 |
+
if model_args.pretrain_vision_model is not None:
|
| 1785 |
+
vision_model_weights = torch.load(model_args.pretrain_vision_model, map_location='cpu')
|
| 1786 |
+
self.vision_tower.vision_tower.load_state_dict(vision_model_weights, strict=True)
|
| 1787 |
+
|
| 1788 |
+
self.config.mm_hidden_size = self.vision_tower.hidden_size
|
| 1789 |
+
|
| 1790 |
+
# mm_projector
|
| 1791 |
+
if getattr(self, 'mm_projector', None) is None:
|
| 1792 |
+
self.mm_projector = build_mm_projector(self.config)
|
| 1793 |
+
|
| 1794 |
+
if model_args.pretrain_mm_mlp_adapter is not None:
|
| 1795 |
+
mm_projector_weights = torch.load(model_args.pretrain_mm_mlp_adapter, map_location='cpu')
|
| 1796 |
+
def get_w(weights, keyword):
|
| 1797 |
+
return {k.split(keyword + '.')[1]: v for k, v in weights.items() if keyword in k}
|
| 1798 |
+
self.mm_projector.load_state_dict(get_w(mm_projector_weights, 'mm_projector'), strict=True)
|
| 1799 |
+
|
| 1800 |
+
def initialize_seg_modules(self, model_args):
|
| 1801 |
+
self.config.segmentation_module = model_args.segmentation_module
|
| 1802 |
+
|
| 1803 |
+
# segmentation_module
|
| 1804 |
+
if getattr(self, 'segmentation_module', None) is None:
|
| 1805 |
+
self.seg_module = build_segmentation_module(self.config)
|
| 1806 |
+
self.seg_projector = nn.Sequential(
|
| 1807 |
+
nn.Linear(self.config.hidden_size, self.config.hidden_size),
|
| 1808 |
+
nn.ReLU(inplace=True),
|
| 1809 |
+
nn.Linear(self.config.hidden_size, self.config.mm_hidden_size),
|
| 1810 |
+
nn.Dropout(0.1),
|
| 1811 |
+
)
|
| 1812 |
+
self.seg_enable = True
|
| 1813 |
+
|
| 1814 |
+
if model_args.pretrain_seg_module is not None:
|
| 1815 |
+
seg_module_weights = torch.load(model_args.pretrain_seg_module, map_location='cpu')
|
| 1816 |
+
self.seg_module.load_state_dict(seg_module_weights, strict=True)
|
| 1817 |
+
|
| 1818 |
+
self.dice_loss = BinaryDiceLoss()
|
| 1819 |
+
self.bce_loss = BCELoss()
|
| 1820 |
+
|
| 1821 |
+
class LamedMetaForCausalLM(ABC):
|
| 1822 |
+
@abstractmethod
|
| 1823 |
+
def get_model(self):
|
| 1824 |
+
pass
|
| 1825 |
+
|
| 1826 |
+
def get_vision_tower(self):
|
| 1827 |
+
return self.get_model().get_vision_tower()
|
| 1828 |
+
|
| 1829 |
+
def encode_images(self, images):
|
| 1830 |
+
image_features = self.get_model().get_vision_tower()(images)
|
| 1831 |
+
image_features = self.get_model().mm_projector(image_features)
|
| 1832 |
+
return image_features
|
| 1833 |
+
|
| 1834 |
+
def prepare_inputs_for_multimodal(
|
| 1835 |
+
self, input_ids, position_ids, attention_mask, past_key_values, labels,
|
| 1836 |
+
images,
|
| 1837 |
+
):
|
| 1838 |
+
vision_tower = self.get_vision_tower()
|
| 1839 |
+
if vision_tower is None or images is None or input_ids.shape[1] == 1:
|
| 1840 |
+
return input_ids, position_ids, attention_mask, past_key_values, None, labels
|
| 1841 |
+
else:
|
| 1842 |
+
image_features = self.encode_images(images)
|
| 1843 |
+
inputs_embeds = self.get_model().embed_tokens(input_ids)
|
| 1844 |
+
inputs_embeds = torch.cat(
|
| 1845 |
+
(inputs_embeds[:, :1, :], image_features, inputs_embeds[:, (image_features.shape[1] + 1):, :]), dim=1)
|
| 1846 |
+
return None, position_ids, attention_mask, past_key_values, inputs_embeds, labels
|
| 1847 |
+
|
| 1848 |
+
def initialize_vision_tokenizer(self, model_args, tokenizer):
|
| 1849 |
+
num_new_tokens = model_args.num_new_tokens
|
| 1850 |
+
|
| 1851 |
+
self.resize_token_embeddings(len(tokenizer))
|
| 1852 |
+
|
| 1853 |
+
if num_new_tokens > 0:
|
| 1854 |
+
input_embeddings = self.get_input_embeddings().weight.data
|
| 1855 |
+
output_embeddings = self.get_output_embeddings().weight.data
|
| 1856 |
+
|
| 1857 |
+
input_embeddings_avg = input_embeddings[:-num_new_tokens].mean(
|
| 1858 |
+
dim=0, keepdim=True)
|
| 1859 |
+
output_embeddings_avg = output_embeddings[:-num_new_tokens].mean(
|
| 1860 |
+
dim=0, keepdim=True)
|
| 1861 |
+
|
| 1862 |
+
input_embeddings[-num_new_tokens:] = input_embeddings_avg
|
| 1863 |
+
output_embeddings[-num_new_tokens:] = output_embeddings_avg
|
| 1864 |
+
|
| 1865 |
+
if model_args.tune_mm_mlp_adapter:
|
| 1866 |
+
for p in self.get_input_embeddings().parameters():
|
| 1867 |
+
p.requires_grad = True
|
| 1868 |
+
for p in self.get_output_embeddings().parameters():
|
| 1869 |
+
p.requires_grad = False
|
| 1870 |
+
else:
|
| 1871 |
+
# we add 4 new tokens
|
| 1872 |
+
# if new tokens need input, please train input_embeddings
|
| 1873 |
+
for p in self.get_input_embeddings().parameters():
|
| 1874 |
+
p.requires_grad = True
|
| 1875 |
+
# if new tokens need predict, please train output_embeddings
|
| 1876 |
+
for p in self.get_output_embeddings().parameters():
|
| 1877 |
+
p.requires_grad = True
|
| 1878 |
+
|
| 1879 |
+
if model_args.pretrain_mm_mlp_adapter:
|
| 1880 |
+
mm_projector_weights = torch.load(model_args.pretrain_mm_mlp_adapter, map_location='cpu')
|
| 1881 |
+
embed_tokens_weight = mm_projector_weights['model.embed_tokens.weight']
|
| 1882 |
+
|
| 1883 |
+
if input_embeddings.shape == embed_tokens_weight.shape:
|
| 1884 |
+
input_embeddings = embed_tokens_weight
|
| 1885 |
+
elif embed_tokens_weight.shape[0] == num_new_tokens:
|
| 1886 |
+
input_embeddings[-num_new_tokens:] = embed_tokens_weight
|
| 1887 |
+
else:
|
| 1888 |
+
raise ValueError(f"Unexpected embed_tokens_weight shape. Pretrained: {embed_tokens_weight.shape}. Current: {input_embeddings.shape}. Numer of new tokens: {num_new_tokens}.")
|
| 1889 |
+
|
| 1890 |
+
|
| 1891 |
+
|
| 1892 |
+
class LamedPhi3Model(LamedMetaModel, Phi3Model):
|
| 1893 |
+
config_class = LamedPhi3Config
|
| 1894 |
+
def __init__(self, config: Phi3Config):
|
| 1895 |
+
super(LamedPhi3Model, self).__init__(config)
|
| 1896 |
+
|
| 1897 |
+
|
| 1898 |
+
class LamedPhi3ForCausalLM(LamedMetaForCausalLM, Phi3ForCausalLM):
|
| 1899 |
+
config_class = LamedPhi3Config
|
| 1900 |
+
|
| 1901 |
+
def __init__(self, config):
|
| 1902 |
+
super(LamedPhi3ForCausalLM, self).__init__(config)
|
| 1903 |
+
self.model = LamedPhi3Model(config)
|
| 1904 |
+
self.vocab_size = config.vocab_size
|
| 1905 |
+
self.lm_head = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
|
| 1906 |
+
|
| 1907 |
+
# Initialize weights and apply final processing
|
| 1908 |
+
self.post_init()
|
| 1909 |
+
|
| 1910 |
+
def get_model(self):
|
| 1911 |
+
return self.model
|
| 1912 |
+
|
| 1913 |
+
def forward(
|
| 1914 |
+
self,
|
| 1915 |
+
images: Optional[torch.FloatTensor] = None,
|
| 1916 |
+
input_ids: torch.LongTensor = None,
|
| 1917 |
+
labels: Optional[torch.LongTensor] = None,
|
| 1918 |
+
attention_mask: Optional[torch.Tensor] = None,
|
| 1919 |
+
segs: Optional[torch.FloatTensor] = None,
|
| 1920 |
+
|
| 1921 |
+
position_ids: Optional[torch.LongTensor] = None,
|
| 1922 |
+
past_key_values: Optional[List[torch.FloatTensor]] = None,
|
| 1923 |
+
inputs_embeds: Optional[torch.FloatTensor] = None,
|
| 1924 |
+
use_cache: Optional[bool] = None,
|
| 1925 |
+
output_attentions: Optional[bool] = None,
|
| 1926 |
+
output_hidden_states: Optional[bool] = None,
|
| 1927 |
+
return_dict: Optional[bool] = None,
|
| 1928 |
+
cache_position: Optional[torch.LongTensor] = None,
|
| 1929 |
+
**kwargs, # <<<<<<<<<<<<<< 加上这行!
|
| 1930 |
+
) -> Union[Tuple, CausalLMOutputWithPast]:
|
| 1931 |
+
|
| 1932 |
+
input_ids_pre = input_ids
|
| 1933 |
+
|
| 1934 |
+
if inputs_embeds is None:
|
| 1935 |
+
(
|
| 1936 |
+
input_ids,
|
| 1937 |
+
position_ids,
|
| 1938 |
+
attention_mask,
|
| 1939 |
+
past_key_values,
|
| 1940 |
+
inputs_embeds,
|
| 1941 |
+
labels
|
| 1942 |
+
) = self.prepare_inputs_for_multimodal(
|
| 1943 |
+
input_ids,
|
| 1944 |
+
position_ids,
|
| 1945 |
+
attention_mask,
|
| 1946 |
+
past_key_values,
|
| 1947 |
+
labels,
|
| 1948 |
+
images,
|
| 1949 |
+
)
|
| 1950 |
+
|
| 1951 |
+
try:
|
| 1952 |
+
seg_ids = torch.nonzero(torch.sum(segs, dim=(1, 2, 3, 4))).flatten().tolist()
|
| 1953 |
+
except:
|
| 1954 |
+
seg_ids = []
|
| 1955 |
+
|
| 1956 |
+
if self.get_model().seg_enable and seg_ids:
|
| 1957 |
+
outputs = super().forward(
|
| 1958 |
+
input_ids=input_ids,
|
| 1959 |
+
inputs_embeds=inputs_embeds,
|
| 1960 |
+
attention_mask=attention_mask,
|
| 1961 |
+
labels=labels,
|
| 1962 |
+
output_hidden_states=True,
|
| 1963 |
+
|
| 1964 |
+
position_ids=position_ids,
|
| 1965 |
+
past_key_values=past_key_values,
|
| 1966 |
+
use_cache=use_cache,
|
| 1967 |
+
output_attentions=output_attentions,
|
| 1968 |
+
return_dict=return_dict
|
| 1969 |
+
)
|
| 1970 |
+
|
| 1971 |
+
output_hidden_states = outputs.hidden_states
|
| 1972 |
+
|
| 1973 |
+
last_hidden_state = output_hidden_states[-1]
|
| 1974 |
+
|
| 1975 |
+
seg_token_mask = input_ids_pre[:, 1:] == self.config.seg_token_id
|
| 1976 |
+
seg_token_mask = torch.cat(
|
| 1977 |
+
[
|
| 1978 |
+
seg_token_mask,
|
| 1979 |
+
torch.zeros((seg_token_mask.shape[0], 1), dtype=seg_token_mask.dtype).cuda(),
|
| 1980 |
+
],
|
| 1981 |
+
dim=1,
|
| 1982 |
+
)
|
| 1983 |
+
|
| 1984 |
+
seg_prompts = []
|
| 1985 |
+
for i in seg_ids:
|
| 1986 |
+
if torch.sum(seg_token_mask[i]) == 1:
|
| 1987 |
+
seg_token = last_hidden_state[i][seg_token_mask[i]]
|
| 1988 |
+
seg_prompt = self.get_model().seg_projector(seg_token)
|
| 1989 |
+
elif torch.sum(seg_token_mask[i]) > 1:
|
| 1990 |
+
seg_tokens = last_hidden_state[i][seg_token_mask[i]]
|
| 1991 |
+
seg_token = torch.mean(seg_tokens, dim=0, keepdim=True)
|
| 1992 |
+
seg_prompt = self.get_model().seg_projector(seg_token)
|
| 1993 |
+
else:
|
| 1994 |
+
seg_prompt = torch.zeros([1, self.config.mm_hidden_size], dtype=last_hidden_state.dtype,
|
| 1995 |
+
device=last_hidden_state.device)
|
| 1996 |
+
seg_prompts.append(seg_prompt)
|
| 1997 |
+
|
| 1998 |
+
seg_prompts = torch.cat(seg_prompts, dim=0)
|
| 1999 |
+
logits = self.get_model().seg_module(images[seg_ids], text_emb=seg_prompts)
|
| 2000 |
+
loss_dice = self.get_model().dice_loss(logits, segs[seg_ids])
|
| 2001 |
+
loss_bce = self.get_model().bce_loss(logits, segs[seg_ids])
|
| 2002 |
+
seg_loss = loss_dice + loss_bce
|
| 2003 |
+
outputs.loss = outputs.loss + seg_loss
|
| 2004 |
+
return outputs
|
| 2005 |
+
else:
|
| 2006 |
+
return super().forward(
|
| 2007 |
+
input_ids=input_ids,
|
| 2008 |
+
attention_mask=attention_mask,
|
| 2009 |
+
position_ids=position_ids,
|
| 2010 |
+
past_key_values=past_key_values,
|
| 2011 |
+
inputs_embeds=inputs_embeds,
|
| 2012 |
+
labels=labels,
|
| 2013 |
+
use_cache=use_cache,
|
| 2014 |
+
output_attentions=output_attentions,
|
| 2015 |
+
output_hidden_states=output_hidden_states,
|
| 2016 |
+
return_dict=return_dict
|
| 2017 |
+
)
|
| 2018 |
+
|
| 2019 |
+
|
| 2020 |
+
@torch.no_grad()
|
| 2021 |
+
def generate(
|
| 2022 |
+
self,
|
| 2023 |
+
images: Optional[torch.Tensor] = None,
|
| 2024 |
+
inputs: Optional[torch.Tensor] = None,
|
| 2025 |
+
seg_enable: bool = False,
|
| 2026 |
+
**kwargs,
|
| 2027 |
+
) -> Union[GenerateOutput, torch.LongTensor, Any]:
|
| 2028 |
+
position_ids = kwargs.pop("position_ids", None)
|
| 2029 |
+
attention_mask = kwargs.pop("attention_mask", None)
|
| 2030 |
+
if "inputs_embeds" in kwargs:
|
| 2031 |
+
raise NotImplementedError("`inputs_embeds` is not supported")
|
| 2032 |
+
|
| 2033 |
+
if images is not None:
|
| 2034 |
+
(
|
| 2035 |
+
inputs,
|
| 2036 |
+
position_ids,
|
| 2037 |
+
attention_mask,
|
| 2038 |
+
_,
|
| 2039 |
+
inputs_embeds,
|
| 2040 |
+
_
|
| 2041 |
+
) = self.prepare_inputs_for_multimodal(
|
| 2042 |
+
inputs,
|
| 2043 |
+
position_ids,
|
| 2044 |
+
attention_mask,
|
| 2045 |
+
None,
|
| 2046 |
+
None,
|
| 2047 |
+
images,
|
| 2048 |
+
)
|
| 2049 |
+
else:
|
| 2050 |
+
inputs_embeds = self.get_model().embed_tokens(inputs)
|
| 2051 |
+
|
| 2052 |
+
if seg_enable:
|
| 2053 |
+
outputs = super().generate(
|
| 2054 |
+
inputs_embeds=inputs_embeds,
|
| 2055 |
+
output_hidden_states=True,
|
| 2056 |
+
return_dict_in_generate=True,
|
| 2057 |
+
**kwargs
|
| 2058 |
+
)
|
| 2059 |
+
|
| 2060 |
+
output_hidden_states = outputs.hidden_states
|
| 2061 |
+
output_ids = outputs.sequences
|
| 2062 |
+
|
| 2063 |
+
seg_token_mask = output_ids[:, 1:] == self.config.seg_token_id
|
| 2064 |
+
|
| 2065 |
+
last_tensors = [tuple[-1] for tuple in output_hidden_states]
|
| 2066 |
+
last_hidden_state = torch.cat(last_tensors[1:], dim=1)
|
| 2067 |
+
|
| 2068 |
+
seg_prompts = []
|
| 2069 |
+
noseg_ids = []
|
| 2070 |
+
for i in range(len(seg_token_mask)):
|
| 2071 |
+
if torch.sum(seg_token_mask[i]) == 1:
|
| 2072 |
+
seg_token = last_hidden_state[i][seg_token_mask[i]]
|
| 2073 |
+
seg_prompt = self.get_model().seg_projector(seg_token)
|
| 2074 |
+
elif torch.sum(seg_token_mask[i]) > 1:
|
| 2075 |
+
seg_tokens = last_hidden_state[i][seg_token_mask[i]]
|
| 2076 |
+
seg_token = torch.mean(seg_tokens, dim=0, keepdim=True)
|
| 2077 |
+
seg_prompt = self.get_model().seg_projector(seg_token)
|
| 2078 |
+
else:
|
| 2079 |
+
noseg_ids.append(i)
|
| 2080 |
+
seg_prompt = torch.zeros([1, self.config.mm_hidden_size], dtype=last_hidden_state.dtype,
|
| 2081 |
+
device=last_hidden_state.device)
|
| 2082 |
+
seg_prompts.append(seg_prompt)
|
| 2083 |
+
|
| 2084 |
+
seg_prompts = torch.cat(seg_prompts, dim=0)
|
| 2085 |
+
logits = self.get_model().seg_module(images, seg_prompts)
|
| 2086 |
+
logits[noseg_ids] = -torch.inf
|
| 2087 |
+
|
| 2088 |
+
return output_ids, logits
|
| 2089 |
+
else:
|
| 2090 |
+
output_ids = super().generate(
|
| 2091 |
+
inputs_embeds=inputs_embeds,
|
| 2092 |
+
**kwargs
|
| 2093 |
+
)
|
| 2094 |
+
return output_ids
|
| 2095 |
+
|
| 2096 |
+
|
| 2097 |
+
def prepare_inputs_for_generation(self, input_ids, past_key_values=None,
|
| 2098 |
+
inputs_embeds=None, **kwargs):
|
| 2099 |
+
images = kwargs.pop("images", None)
|
| 2100 |
+
inputs = super().prepare_inputs_for_generation(
|
| 2101 |
+
input_ids, past_key_values=past_key_values, inputs_embeds=inputs_embeds, **kwargs
|
| 2102 |
+
)
|
| 2103 |
+
if images is not None:
|
| 2104 |
+
inputs['images'] = images
|
| 2105 |
+
return inputs
|
mytrain_all/special_tokens_map.json
ADDED
|
@@ -0,0 +1,53 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"additional_special_tokens": [
|
| 3 |
+
{
|
| 4 |
+
"content": "<im_patch>",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false
|
| 9 |
+
},
|
| 10 |
+
{
|
| 11 |
+
"content": "<bx_start>",
|
| 12 |
+
"lstrip": false,
|
| 13 |
+
"normalized": false,
|
| 14 |
+
"rstrip": false,
|
| 15 |
+
"single_word": false
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"content": "<bx_end>",
|
| 19 |
+
"lstrip": false,
|
| 20 |
+
"normalized": false,
|
| 21 |
+
"rstrip": false,
|
| 22 |
+
"single_word": false
|
| 23 |
+
}
|
| 24 |
+
],
|
| 25 |
+
"bos_token": {
|
| 26 |
+
"content": "<s>",
|
| 27 |
+
"lstrip": false,
|
| 28 |
+
"normalized": false,
|
| 29 |
+
"rstrip": false,
|
| 30 |
+
"single_word": false
|
| 31 |
+
},
|
| 32 |
+
"eos_token": {
|
| 33 |
+
"content": "<|endoftext|>",
|
| 34 |
+
"lstrip": false,
|
| 35 |
+
"normalized": false,
|
| 36 |
+
"rstrip": false,
|
| 37 |
+
"single_word": false
|
| 38 |
+
},
|
| 39 |
+
"pad_token": {
|
| 40 |
+
"content": "<|endoftext|>",
|
| 41 |
+
"lstrip": false,
|
| 42 |
+
"normalized": false,
|
| 43 |
+
"rstrip": false,
|
| 44 |
+
"single_word": false
|
| 45 |
+
},
|
| 46 |
+
"unk_token": {
|
| 47 |
+
"content": "<unk>",
|
| 48 |
+
"lstrip": false,
|
| 49 |
+
"normalized": false,
|
| 50 |
+
"rstrip": false,
|
| 51 |
+
"single_word": false
|
| 52 |
+
}
|
| 53 |
+
}
|
mytrain_all/tokenizer.model
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9e556afd44213b6bd1be2b850ebbbd98f5481437a8021afaf58ee7fb1818d347
|
| 3 |
+
size 499723
|
mytrain_all/tokenizer_config.json
ADDED
|
@@ -0,0 +1,170 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"add_bos_token": true,
|
| 3 |
+
"add_eos_token": false,
|
| 4 |
+
"add_prefix_space": true,
|
| 5 |
+
"added_tokens_decoder": {
|
| 6 |
+
"0": {
|
| 7 |
+
"content": "<unk>",
|
| 8 |
+
"lstrip": false,
|
| 9 |
+
"normalized": false,
|
| 10 |
+
"rstrip": false,
|
| 11 |
+
"single_word": false,
|
| 12 |
+
"special": true
|
| 13 |
+
},
|
| 14 |
+
"1": {
|
| 15 |
+
"content": "<s>",
|
| 16 |
+
"lstrip": false,
|
| 17 |
+
"normalized": false,
|
| 18 |
+
"rstrip": false,
|
| 19 |
+
"single_word": false,
|
| 20 |
+
"special": true
|
| 21 |
+
},
|
| 22 |
+
"2": {
|
| 23 |
+
"content": "</s>",
|
| 24 |
+
"lstrip": false,
|
| 25 |
+
"normalized": false,
|
| 26 |
+
"rstrip": true,
|
| 27 |
+
"single_word": false,
|
| 28 |
+
"special": false
|
| 29 |
+
},
|
| 30 |
+
"32000": {
|
| 31 |
+
"content": "<|endoftext|>",
|
| 32 |
+
"lstrip": false,
|
| 33 |
+
"normalized": false,
|
| 34 |
+
"rstrip": false,
|
| 35 |
+
"single_word": false,
|
| 36 |
+
"special": true
|
| 37 |
+
},
|
| 38 |
+
"32001": {
|
| 39 |
+
"content": "<|assistant|>",
|
| 40 |
+
"lstrip": false,
|
| 41 |
+
"normalized": false,
|
| 42 |
+
"rstrip": true,
|
| 43 |
+
"single_word": false,
|
| 44 |
+
"special": true
|
| 45 |
+
},
|
| 46 |
+
"32002": {
|
| 47 |
+
"content": "<|placeholder1|>",
|
| 48 |
+
"lstrip": false,
|
| 49 |
+
"normalized": false,
|
| 50 |
+
"rstrip": true,
|
| 51 |
+
"single_word": false,
|
| 52 |
+
"special": true
|
| 53 |
+
},
|
| 54 |
+
"32003": {
|
| 55 |
+
"content": "<|placeholder2|>",
|
| 56 |
+
"lstrip": false,
|
| 57 |
+
"normalized": false,
|
| 58 |
+
"rstrip": true,
|
| 59 |
+
"single_word": false,
|
| 60 |
+
"special": true
|
| 61 |
+
},
|
| 62 |
+
"32004": {
|
| 63 |
+
"content": "<|placeholder3|>",
|
| 64 |
+
"lstrip": false,
|
| 65 |
+
"normalized": false,
|
| 66 |
+
"rstrip": true,
|
| 67 |
+
"single_word": false,
|
| 68 |
+
"special": true
|
| 69 |
+
},
|
| 70 |
+
"32005": {
|
| 71 |
+
"content": "<|placeholder4|>",
|
| 72 |
+
"lstrip": false,
|
| 73 |
+
"normalized": false,
|
| 74 |
+
"rstrip": true,
|
| 75 |
+
"single_word": false,
|
| 76 |
+
"special": true
|
| 77 |
+
},
|
| 78 |
+
"32006": {
|
| 79 |
+
"content": "<|system|>",
|
| 80 |
+
"lstrip": false,
|
| 81 |
+
"normalized": false,
|
| 82 |
+
"rstrip": true,
|
| 83 |
+
"single_word": false,
|
| 84 |
+
"special": true
|
| 85 |
+
},
|
| 86 |
+
"32007": {
|
| 87 |
+
"content": "<|end|>",
|
| 88 |
+
"lstrip": false,
|
| 89 |
+
"normalized": false,
|
| 90 |
+
"rstrip": true,
|
| 91 |
+
"single_word": false,
|
| 92 |
+
"special": true
|
| 93 |
+
},
|
| 94 |
+
"32008": {
|
| 95 |
+
"content": "<|placeholder5|>",
|
| 96 |
+
"lstrip": false,
|
| 97 |
+
"normalized": false,
|
| 98 |
+
"rstrip": true,
|
| 99 |
+
"single_word": false,
|
| 100 |
+
"special": true
|
| 101 |
+
},
|
| 102 |
+
"32009": {
|
| 103 |
+
"content": "<|placeholder6|>",
|
| 104 |
+
"lstrip": false,
|
| 105 |
+
"normalized": false,
|
| 106 |
+
"rstrip": true,
|
| 107 |
+
"single_word": false,
|
| 108 |
+
"special": true
|
| 109 |
+
},
|
| 110 |
+
"32010": {
|
| 111 |
+
"content": "<|user|>",
|
| 112 |
+
"lstrip": false,
|
| 113 |
+
"normalized": false,
|
| 114 |
+
"rstrip": true,
|
| 115 |
+
"single_word": false,
|
| 116 |
+
"special": true
|
| 117 |
+
},
|
| 118 |
+
"32011": {
|
| 119 |
+
"content": "<im_patch>",
|
| 120 |
+
"lstrip": false,
|
| 121 |
+
"normalized": false,
|
| 122 |
+
"rstrip": false,
|
| 123 |
+
"single_word": false,
|
| 124 |
+
"special": true
|
| 125 |
+
},
|
| 126 |
+
"32012": {
|
| 127 |
+
"content": "<bx_start>",
|
| 128 |
+
"lstrip": false,
|
| 129 |
+
"normalized": false,
|
| 130 |
+
"rstrip": false,
|
| 131 |
+
"single_word": false,
|
| 132 |
+
"special": true
|
| 133 |
+
},
|
| 134 |
+
"32013": {
|
| 135 |
+
"content": "<bx_end>",
|
| 136 |
+
"lstrip": false,
|
| 137 |
+
"normalized": false,
|
| 138 |
+
"rstrip": false,
|
| 139 |
+
"single_word": false,
|
| 140 |
+
"special": true
|
| 141 |
+
},
|
| 142 |
+
"32014": {
|
| 143 |
+
"content": "[SEG]",
|
| 144 |
+
"lstrip": false,
|
| 145 |
+
"normalized": true,
|
| 146 |
+
"rstrip": false,
|
| 147 |
+
"single_word": false,
|
| 148 |
+
"special": false
|
| 149 |
+
}
|
| 150 |
+
},
|
| 151 |
+
"additional_special_tokens": [
|
| 152 |
+
"<im_patch>",
|
| 153 |
+
"<bx_start>",
|
| 154 |
+
"<bx_end>"
|
| 155 |
+
],
|
| 156 |
+
"bos_token": "<s>",
|
| 157 |
+
"chat_template": "{{ bos_token }}{% for message in messages %}{% if (message['role'] == 'user') %}{{'<|user|>' + '\n' + message['content'] + '<|end|>' + '\n' + '<|assistant|>' + '\n'}}{% elif (message['role'] == 'assistant') %}{{message['content'] + '<|end|>' + '\n'}}{% endif %}{% endfor %}",
|
| 158 |
+
"clean_up_tokenization_spaces": false,
|
| 159 |
+
"eos_token": "<|endoftext|>",
|
| 160 |
+
"extra_special_tokens": {},
|
| 161 |
+
"legacy": false,
|
| 162 |
+
"model_max_length": 4096,
|
| 163 |
+
"pad_token": "<|endoftext|>",
|
| 164 |
+
"padding_side": "right",
|
| 165 |
+
"sp_model_kwargs": {},
|
| 166 |
+
"spaces_between_special_tokens": false,
|
| 167 |
+
"tokenizer_class": "LlamaTokenizer",
|
| 168 |
+
"unk_token": "<unk>",
|
| 169 |
+
"use_default_system_prompt": false
|
| 170 |
+
}
|