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README.md
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license: mit
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---
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license: mit
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metrics:
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- accuracy
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- precision
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- recall
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- f1
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base_model:
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- microsoft/resnet-18
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pipeline_tag: image-classification
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tags:
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- deep-learning
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- computer-vision
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- medical-imaging
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---
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# Model Card: Brain Tumor Multi-Class Classification
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## Model Details
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### Model Description
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A fine-tuned ResNet18 convolutional neural network for classifying brain MRI scans into four categories of brain tumors. The model uses transfer learning with ImageNet pre-trained weights and has been adapted for medical image classification.
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- **Developed by:** Thisen Ekanayake
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- **Model type:** Convolutional Neural Network (ResNet18)
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- **Language(s):** Python (PyTorch)
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- **License:** MIT License
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- **Demo:** https://brainet.thisenekanayake.me
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- **Parent Model:** ResNet18 (pretrained on ImageNet)
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- **Model Variants:** This model card focuses on the **multi-class classification model** (4 classes: glioma, meningioma, no tumor, pituitary). A **binary classification model** (tumor vs. no tumor) is also available in the GitHub repository with complete training and evaluation scripts.
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### Model Architecture
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- **Base Architecture:** ResNet18
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- **Input:** RGB images resized to 224x224 pixels
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- **Output:** 4-class classification (glioma, meningioma, notumor, pituitary)
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- **Modifications:**
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- Final fully connected layer replaced with 4-class output
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- Early layers frozen during training
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- Only layer4 and final FC layer fine-tuned
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- **Parameters:** ~11M total parameters
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## Intended Uses
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### Primary Use Case
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This model is designed for **research and educational purposes only** to demonstrate deep learning applications in medical image analysis. It can be used to:
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- Study transfer learning techniques in medical imaging
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- Explore brain tumor classification methodologies
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- Educational demonstrations of CNN architectures
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- Research prototyping and benchmarking
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### Out-of-Scope Uses
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- **NOT for clinical diagnosis or treatment decisions**
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- **NOT for patient care or medical decision-making**
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- **NOT a replacement for professional medical evaluation**
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- **NOT validated for deployment in healthcare settings**
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- Should not be used without expert medical supervision
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## Training Data
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### Dataset Information
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- **Source:** Brain Tumor Segmentation(BraTS2020)
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- **Dataset Link:** https://www.kaggle.com/datasets/awsaf49/brats2020-training-data
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- **Classes:**
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1. Glioma
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2. Meningioma
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3. No Tumor
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4. Pituitary Tumor
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### Dataset Statistics
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- **Training samples:** 5712
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- **Testing samples:** 1311
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- **Class Distribution (Training):**
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- Imbalanced dataset with varying samples per class
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- Weighted sampling used to address class imbalance
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- Class weights applied during training
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### Data Preprocessing
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- **Image Resizing:** 224x224 pixels
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- **Normalization:** ImageNet statistics (mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])
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- **Training Augmentations:**
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- Random horizontal flip (p=0.5)
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- Random rotation (±10 degrees)
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- Color jitter (brightness=0.2, contrast=0.2)
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- **Test Preprocessing:** Resize and normalize only (no augmentation)
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### Known Dataset Limitations
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- Limited diversity in imaging protocols and scanner types
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- Potential demographic biases in patient populations
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- Images may not represent all tumor subtypes or presentations
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- Dataset size may limit generalization to rare cases
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- Quality and annotation consistency may vary
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## Model Performance
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### Overall Metrics (Test Set)
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Evaluated on **1,311 test samples** with **1,298 correct predictions** (13 errors):
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| Metric | Weighted Avg | Macro Avg |
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|--------|--------------|-----------|
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| **Accuracy** | **99.01%** | - |
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| **Precision** | **99.03%** | 98.96% |
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| **Recall** | **99.01%** | 98.92% |
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| **F1 Score** | **99.01%** | 98.92% |
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### Per-Class Performance
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| Class | Precision | Recall | F1 Score | Support |
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|-------|-----------|--------|----------|---------|
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| **Glioma** | 99.66% | 96.33% | 97.97% | 300 |
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| **Meningioma** | 96.53% | 100.00% | 98.23% | 306 |
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| **No Tumor** | 100.00% | 100.00% | 100.00% | 405 |
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| **Pituitary** | 99.67% | 99.33% | 99.50% | 300 |
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#### Detailed Analysis by Class
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**Glioma:**
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- Correctly classified: 289/300 (96.33%)
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- Misclassified as Meningioma: 10 cases
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- Misclassified as Pituitary: 1 case
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- High precision (99.66%) indicates few false positives
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**Meningioma:**
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- Correctly classified: 306/306 (100% recall)
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- Perfect recall with no false negatives
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- Precision of 96.53% due to 11 false positives from other classes
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**No Tumor:**
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- Perfect classification (100% precision, recall, and F1)
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- 405/405 correctly identified
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- No confusion with tumor classes
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**Pituitary:**
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- Correctly classified: 298/300 (99.33%)
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- Misclassified as Glioma: 1 case
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- Misclassified as Meningioma: 1 case
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- Near-perfect performance across all metrics
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### Confusion Analysis
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- **Total Errors:** 13 out of 1,311 samples (0.99% error rate)
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- **Most Common Error:** Glioma misclassified as Meningioma (10 cases)
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- **Best Performance:** No Tumor class (perfect classification)
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- **Clinical Significance:** The model never confuses tumor cases with "No Tumor", which is critical for medical screening applications
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## Training Procedure
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### Training Configuration
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- **Framework:** PyTorch
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- **Optimizer:** Adam
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- **Learning Rate:** 1e-4
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- **Batch Size:** 16
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- **Loss Function:** CrossEntropyLoss with class weights
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- **Device:** CUDA (GPU) Nvidia GeForce RTX 4060 8GB
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- **Training Strategy:** Transfer learning with partial fine-tuning
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### Training Details
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1. **Layer Freezing:** All layers frozen except layer4 and final FC layer
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2. **Class Imbalance Handling:**
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- Weighted random sampling during training
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- Class-weighted loss function
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3. **Validation:** Evaluated on test set after each epoch
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4. **Early Stopping:** Not implemented (trained for full 10 epochs)
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### Computational Requirements
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- **Training Time:** Hardware dependent
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- **GPU Memory:** Suitable for single GPU training
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- **Inference Time:** Fast inference suitable for real-time applications
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## Limitations and Biases
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### Technical Limitations
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1. **Input Constraints:**
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- Requires specific image dimensions (224x224)
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- Expects RGB format with ImageNet normalization
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- May not handle varying image qualities well
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2. **Performance Limitations:**
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- Trained on limited dataset size
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- May not generalize to images from different scanners or protocols
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- Performance on edge cases and rare tumor types unknown
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3. **Architectural Limitations:**
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- ResNet18 is relatively shallow; deeper models might capture more complex patterns
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- Single-view classification (doesn't utilize 3D MRI volumes)
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- No attention mechanisms or interpretability features
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### Potential Biases
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1. **Dataset Bias:**
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- Training data may not represent global population diversity
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- Potential geographical, demographic, or institutional biases
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- Scanner and imaging protocol biases
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2. **Class Imbalance:**
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- Despite weighted sampling, model may still favor majority classes
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- Rare tumor presentations underrepresented
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3. **Annotation Bias:**
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- Dependent on original dataset annotation quality
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- May inherit labeling errors or inconsistencies
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### Medical and Ethical Considerations
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1. **NOT Clinically Validated:**
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- No regulatory approval (FDA, CE, etc.)
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- Not tested in real clinical workflows
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- Performance on real-world clinical data unknown
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2. **Risk of Misuse:**
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- Should never replace professional medical judgment
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- False positives/negatives could lead to inappropriate actions if misused
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- Requires proper medical context for interpretation
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3. **Privacy Considerations:**
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- Ensure patient data privacy when using model
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- Comply with HIPAA, GDPR, and local regulations
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- Anonymize any input images appropriately
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## Recommendations
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### For Researchers and Developers
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- Use as baseline or comparison model for brain tumor classification research
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- Experiment with different architectures, hyperparameters, or training strategies
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- Combine with other models or modalities for improved performance
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- Conduct thorough validation on your specific use case
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### For Educators
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- Excellent demonstration of transfer learning in medical imaging
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- Shows importance of handling class imbalance
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- Good example of CNN fine-tuning strategies
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- Can be used to teach medical AI ethics and limitations
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### Best Practices
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1. Always validate model predictions with ground truth when available
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2. Use ensemble methods or multiple models for critical applications
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3. Implement uncertainty quantification to identify low-confidence predictions
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4. Continuously monitor model performance on new data
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5. Maintain human oversight for all predictions
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## How to Use
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### Loading the Model
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```python
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import torch
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import torch.nn as nn
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from torchvision import models
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| 244 |
+
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 245 |
+
|
| 246 |
+
# Load model architecture
|
| 247 |
+
model = models.resnet18(pretrained=False)
|
| 248 |
+
num_ftrs = model.fc.in_features
|
| 249 |
+
model.fc = nn.Linear(num_ftrs, 4)
|
| 250 |
+
model = model.to(device)
|
| 251 |
+
|
| 252 |
+
# Load trained weights
|
| 253 |
+
model.load_state_dict(torch.load("multi_class_resnet.pth"))
|
| 254 |
+
model.eval()
|
| 255 |
+
```
|
| 256 |
+
|
| 257 |
+
### Image Preprocessing
|
| 258 |
+
```python
|
| 259 |
+
from torchvision import transforms
|
| 260 |
+
|
| 261 |
+
test_transforms = transforms.Compose([
|
| 262 |
+
transforms.Resize((224, 224)),
|
| 263 |
+
transforms.ToTensor(),
|
| 264 |
+
transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
|
| 265 |
+
])
|
| 266 |
+
```
|
| 267 |
+
|
| 268 |
+
### Making Predictions
|
| 269 |
+
```python
|
| 270 |
+
with torch.no_grad():
|
| 271 |
+
image = test_transforms(pil_image).unsqueeze(0).to(device)
|
| 272 |
+
output = model(image)
|
| 273 |
+
_, prediction = torch.max(output, 1)
|
| 274 |
+
|
| 275 |
+
class_names = ['glioma', 'meningioma', 'notumor', 'pituitary']
|
| 276 |
+
predicted_class = class_names[prediction.item()]
|
| 277 |
+
```
|
| 278 |
+
|
| 279 |
+
## Citation
|
| 280 |
+
|
| 281 |
+
If you use this model in your research, please cite:
|
| 282 |
+
|
| 283 |
+
```bibtex
|
| 284 |
+
@misc{brain_tumor_classifier_2025,
|
| 285 |
+
title={BRAINet - Brain Tumor Multi-Class Classification using ResNet18},
|
| 286 |
+
author={Thisen Ekanayake},
|
| 287 |
+
year={2025},
|
| 288 |
+
url={https://brainet.thisenekanayake.me},
|
| 289 |
+
note={Educational and research purposes only}
|
| 290 |
+
}
|
| 291 |
+
```
|
| 292 |
+
|
| 293 |
+
### Dataset Citation
|
| 294 |
+
```bibtex
|
| 295 |
+
@misc{brats20_dataset,
|
| 296 |
+
author={Awsaf},
|
| 297 |
+
title={Brain Tumor Segmentation(BraTS2020)},
|
| 298 |
+
year={2020},
|
| 299 |
+
url={https://www.kaggle.com/datasets/awsaf49/brats2020-training-data}
|
| 300 |
+
}
|
| 301 |
+
```
|
| 302 |
+
|
| 303 |
+
## Contact and Support
|
| 304 |
+
|
| 305 |
+
- **Demo Application:** https://brainet.thisenekanayake.me
|
| 306 |
+
- **GitHub Repository:** https://github.com/Thisen-Ekanayake/BRAINet
|
| 307 |
+
- **Binary Classification Model:** Available in the repository with complete training and evaluation scripts
|
| 308 |
+
- **Issues:** Submit issues via the GitHub repository
|
| 309 |
+
- **Contributions:** Welcome via pull requests to the [BRAINet GitHub repository](https://github.com/Thisen-Ekanayake/BRAINet.git)
|
| 310 |
+
|
| 311 |
+
## Model Card Version
|
| 312 |
+
|
| 313 |
+
- **Version:** 1.0
|
| 314 |
+
- **Date:** February 2026
|
| 315 |
+
- **Last Updated:** February 2026
|
| 316 |
+
|
| 317 |
+
## Glossary
|
| 318 |
+
|
| 319 |
+
- **Glioma:** A type of tumor that occurs in the brain and spinal cord
|
| 320 |
+
- **Meningioma:** A tumor that arises from the meninges (membranes surrounding the brain and spinal cord)
|
| 321 |
+
- **Pituitary Tumor:** A growth in the pituitary gland
|
| 322 |
+
- **Transfer Learning:** Using a pre-trained model and adapting it for a new task
|
| 323 |
+
- **Fine-tuning:** Training select layers of a pre-trained model on new data
|
| 324 |
+
- **Class Imbalance:** When training data has unequal numbers of samples per class
|
| 325 |
+
|
| 326 |
+
---
|
| 327 |
+
|
| 328 |
+
## ⚠️ CRITICAL DISCLAIMER
|
| 329 |
+
|
| 330 |
+
**THIS MODEL IS FOR RESEARCH AND EDUCATIONAL PURPOSES ONLY**
|
| 331 |
+
|
| 332 |
+
This model has NOT been validated for clinical use and should NEVER be used for:
|
| 333 |
+
- Medical diagnosis
|
| 334 |
+
- Treatment planning
|
| 335 |
+
- Patient care decisions
|
| 336 |
+
- Clinical decision support
|
| 337 |
+
|
| 338 |
+
Always consult qualified healthcare professionals for medical advice, diagnosis, and treatment. The developers assume no liability for misuse of this model in clinical or medical settings.
|
| 339 |
+
|
| 340 |
+
---
|
| 341 |
+
|
| 342 |
+
*This model card follows the framework proposed by Mitchell et al. (2019) and adapted for medical AI applications.*
|