#!/bin/bash #PBS -N compare_activations #PBS -l select=1:ngpus=8 #PBS -l walltime=12:00:00 #PBS -q ic102 #PBS -P 71001002 #PBS -j oe # ============================================================================= # PBS Job File: Compare SAE Activations — Original vs Modified LLaVA # # Runs training/compare_activations.py which: # 1. Loads linear probe checkpoints → top-k features + sub-threshold features # 2. Runs forward passes through both models on the same inputs # 3. Computes per-feature activation stats for top-k features # 4. Computes |diff| and JSD for sub-threshold features # 5. Saves comparison.json # # FILTER MODES (set FILTER_MODE below) # ------------ # bathroom — bathroom == 1 (regardless of toilet value) # toilet — toilet == 1 (regardless of bathroom value) # both — toilet == 1 OR bathroom == 1 # all — no filtering # # To submit: # qsub training/scripts/run_compare_activations.pbs # # Override any variable: # FILTER_MODE=toilet MODIFIED_MODEL=/path/to/model \ # qsub training/scripts/run_compare_activations.pbs # # To add a third (Nullu-edited) model to the comparison, set NULLU_MODEL_PATH # to the directory produced by Nullu's experiments/llava_edit.pbs, and optionally # override NULLU_LOWEST_LAYER / NULLU_HIGHEST_LAYER: # NULLU_MODEL_PATH=/path/to/Nullu/output/edited_model/LLaVA-7B-top4-0-32-test \ # NULLU_LOWEST_LAYER=16 NULLU_HIGHEST_LAYER=32 \ # qsub training/scripts/run_compare_activations.pbs # ============================================================================= cd ${PBS_O_WORKDIR} # Load CUDA module load cuda/12.6.2 export CUDA_HOME="${CUDA_HOME:-$(dirname $(dirname $(which nvcc 2>/dev/null)))}" # Activate environment source "${HOME}/scratch/testing/multilayer-sae/venv/bin/activate" # Ensure paths export PATH=$HOME/.local/bin:$PATH export HF_HOME="${HF_HOME:-${HOME}/scratch/hf_home}" export PYTHONPATH="${PBS_O_WORKDIR}:${PYTHONPATH:-}" if [ -f "${PBS_O_WORKDIR}/.env" ]; then set -a source "${PBS_O_WORKDIR}/.env" set +a fi # Create log directory mkdir -p logs/compare # ============================================================================= # Hyperparameters — override via env before qsub # ============================================================================= # ── GPU ─────────────────────────────────────────────────────────────────────── export NUM_GPUS="${NUM_GPUS:-8}" # ── Models ──────────────────────────────────────────────────────────────────── export ORIGINAL_MODEL="${ORIGINAL_MODEL:-llava-hf/llava-1.5-7b-hf}" export MODIFIED_MODEL="${MODIFIED_MODEL:-/home/users/ntu/cong045/scratch/testing/multilayer-sae/adv_outputs/bathroom_toilet/run_20260405_152304/lora_adapter}" export SAE_CKPT="${SAE_CKPT:-training/multilayer_sae_ckpt/last.ckpt}" export DTYPE="${DTYPE:-float16}" # ── Nullu model (optional; leave NULLU_MODEL_PATH empty to skip) ────────────── # Point NULLU_MODEL_PATH at Nullu's edited checkpoint directory, e.g. # /path/to/Nullu/output/edited_model/LLaVA-7B-top4-0-32-test export NULLU_MODEL_PATH="${NULLU_MODEL_PATH:-}" export NULLU_LOWEST_LAYER="${NULLU_LOWEST_LAYER:-16}" export NULLU_HIGHEST_LAYER="${NULLU_HIGHEST_LAYER:-32}" # ── Probe ───────────────────────────────────────────────────────────────────── export PROBE_DIR="${PROBE_DIR:-training/multilayer_sae_ckpt}" export PROBE_INPUT_DIM="${PROBE_INPUT_DIM:-65536}" export LAYERS="${LAYERS:-0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31}" export TOP_PROBE_K="${TOP_PROBE_K:-1000}" # features tracked & saved to JSON export TOP_PRINT_K="${TOP_PRINT_K:-20}" # features printed per-row in log # ── Data ────────────────────────────────────────────────────────────────────── export DATA_MODE="${DATA_MODE:-single}" # single | toilet | cc3m | coco export CAPTION_MODE="${CAPTION_MODE:-generated}" # generated | caption # [toilet] HF dataset + local image folder + bathroom/toilet filter export HF_DATASET="${HF_DATASET:-pbcong/bathroom-toilet}" export IMAGE_FOLDER="${IMAGE_FOLDER:-/home/users/ntu/cong045/scratch/testing/hallucination/CC3M-Dataset/cc3m_images/train}" export FILTER_MODE="${FILTER_MODE:-bathroom}" # bathroom | toilet | both | all # [single] Path to one image file export IMAGE_PATH="${IMAGE_PATH:-/home/users/ntu/cong045/scratch/testing/hallucination/CC3M-Dataset/cc3m_images/train/000021450.jpg}" # [cc3m / coco] Local image root + dataset split export LOCAL_VAL_PATH="${LOCAL_VAL_PATH:-}" export SPLIT="${SPLIT:-train}" # ── Distribution measure ─────────────────────────────────────────────────────── export MEASURE_DISTRIBUTION="${MEASURE_DISTRIBUTION:-kl_divergence}" # jensen_shannon_divergence | kl_divergence # ── Diff norm ───────────────────────────────────────────────────────────────── export DIFF_NORM="${DIFF_NORM:-l1}" # l1 | l2 # ── Processing ──────────────────────────────────────────────────────────────── export BATCH_SIZE="${BATCH_SIZE:-64}" export SAE_BATCH="${SAE_BATCH:-4096}" export NUM_WORKERS="${NUM_WORKERS:-16}" export MAX_BATCHES="${MAX_BATCHES:-}" export DIST_TIMEOUT_HOURS="${DIST_TIMEOUT_HOURS:-8}" # NCCL timeout; increase if batches take >1h # ── Output ──────────────────────────────────────────────────────────────────── export OUTPUT_DIR="${OUTPUT_DIR:-training/compare_activations}" LOGFILE="logs/compare/compare_activations_${PBS_JOBID}.log" # ============================================================================= # Validation # ============================================================================= if [ ! -f "${SAE_CKPT}" ]; then echo "Error: SAE checkpoint not found: ${SAE_CKPT}" >&2 exit 1 fi if [ ! -d "${PROBE_DIR}" ]; then echo "Error: PROBE_DIR not found: ${PROBE_DIR}" >&2 exit 1 fi if [ "${DATA_MODE}" = "single" ]; then if [ -z "${IMAGE_PATH}" ]; then echo "Error: DATA_MODE=single requires IMAGE_PATH" >&2 exit 1 fi if [ ! -f "${IMAGE_PATH}" ]; then echo "Error: IMAGE_PATH not found: ${IMAGE_PATH}" >&2 exit 1 fi elif [ "${DATA_MODE}" = "toilet" ]; then if [ ! -d "${IMAGE_FOLDER}" ]; then echo "Error: IMAGE_FOLDER not found: ${IMAGE_FOLDER}" >&2 exit 1 fi elif [ "${DATA_MODE}" = "cc3m" ] || [ "${DATA_MODE}" = "coco" ]; then if [ -z "${LOCAL_VAL_PATH}" ]; then echo "Error: DATA_MODE=${DATA_MODE} requires LOCAL_VAL_PATH" >&2 exit 1 fi else echo "Error: Unknown DATA_MODE=${DATA_MODE} (single | toilet | cc3m | coco)" >&2 exit 1 fi # ============================================================================= # Setup # ============================================================================= echo "========================================" | tee -a "${LOGFILE}" echo "Job: Compare Activations (Original vs Modified)" | tee -a "${LOGFILE}" echo "Job ID: ${PBS_JOBID}" | tee -a "${LOGFILE}" echo "Node: $(hostname)" | tee -a "${LOGFILE}" echo "Started: $(date)" | tee -a "${LOGFILE}" echo "original_model: ${ORIGINAL_MODEL}" | tee -a "${LOGFILE}" echo "modified_model: ${MODIFIED_MODEL}" | tee -a "${LOGFILE}" if [ -n "${NULLU_MODEL_PATH}" ]; then echo "nullu_model: ${NULLU_MODEL_PATH}" | tee -a "${LOGFILE}" echo "nullu_layers: ${NULLU_LOWEST_LAYER}-${NULLU_HIGHEST_LAYER}" \ | tee -a "${LOGFILE}" fi echo "sae_ckpt: ${SAE_CKPT}" | tee -a "${LOGFILE}" echo "probe_dir: ${PROBE_DIR}" | tee -a "${LOGFILE}" echo "layers: ${LAYERS}" | tee -a "${LOGFILE}" echo "top_probe_k: ${TOP_PROBE_K}" | tee -a "${LOGFILE}" echo "top_print_k: ${TOP_PRINT_K}" | tee -a "${LOGFILE}" echo "data_mode: ${DATA_MODE}" | tee -a "${LOGFILE}" echo "caption_mode: ${CAPTION_MODE}" | tee -a "${LOGFILE}" echo "measure_dist: ${MEASURE_DISTRIBUTION}" | tee -a "${LOGFILE}" echo "diff_norm: ${DIFF_NORM}" | tee -a "${LOGFILE}" if [ "${DATA_MODE}" = "single" ]; then echo "image_path: ${IMAGE_PATH}" | tee -a "${LOGFILE}" elif [ "${DATA_MODE}" = "toilet" ]; then echo "hf_dataset: ${HF_DATASET}" | tee -a "${LOGFILE}" echo "image_folder: ${IMAGE_FOLDER}" | tee -a "${LOGFILE}" echo "filter_mode: ${FILTER_MODE}" | tee -a "${LOGFILE}" elif [ "${DATA_MODE}" = "cc3m" ] || [ "${DATA_MODE}" = "coco" ]; then echo "hf_dataset: ${HF_DATASET}" | tee -a "${LOGFILE}" echo "local_val_path:${LOCAL_VAL_PATH}" | tee -a "${LOGFILE}" echo "split: ${SPLIT}" | tee -a "${LOGFILE}" fi echo "batch_size: ${BATCH_SIZE}" | tee -a "${LOGFILE}" echo "output_dir: ${OUTPUT_DIR}" | tee -a "${LOGFILE}" echo "========================================" | tee -a "${LOGFILE}" # GPU check echo "" | tee -a "${LOGFILE}" echo "GPU Info:" | tee -a "${LOGFILE}" nvidia-smi --query-gpu=index,name,memory.total --format=csv | tee -a "${LOGFILE}" # ============================================================================= # Build argument list # ============================================================================= ARGS=( --original_model "${ORIGINAL_MODEL}" --modified_model "${MODIFIED_MODEL}" --sae_ckpt "${SAE_CKPT}" --dtype "${DTYPE}" --probe_dir "${PROBE_DIR}" --probe_input_dim "${PROBE_INPUT_DIM}" --layers ${LAYERS} --top_probe_k "${TOP_PROBE_K}" --top_print_k "${TOP_PRINT_K}" --data_mode "${DATA_MODE}" --caption_mode "${CAPTION_MODE}" --measure_distribution "${MEASURE_DISTRIBUTION}" --diff_norm "${DIFF_NORM}" --batch_size "${BATCH_SIZE}" --sae_batch "${SAE_BATCH}" --num_workers "${NUM_WORKERS}" --output_dir "${OUTPUT_DIR}" --dist_timeout_hours "${DIST_TIMEOUT_HOURS}" ) # Data-mode-specific arguments if [ "${DATA_MODE}" = "single" ]; then ARGS+=(--image_path "${IMAGE_PATH}") elif [ "${DATA_MODE}" = "toilet" ]; then ARGS+=(--hf_dataset "${HF_DATASET}") ARGS+=(--image_folder "${IMAGE_FOLDER}") ARGS+=(--filter_mode "${FILTER_MODE}") elif [ "${DATA_MODE}" = "cc3m" ] || [ "${DATA_MODE}" = "coco" ]; then ARGS+=(--hf_dataset "${HF_DATASET}") ARGS+=(--local_val_path "${LOCAL_VAL_PATH}") ARGS+=(--split "${SPLIT}") fi if [ -n "${MAX_BATCHES}" ]; then ARGS+=(--max_batches "${MAX_BATCHES}") fi if [ -n "${NULLU_MODEL_PATH}" ]; then ARGS+=(--nullu_model_path "${NULLU_MODEL_PATH}") ARGS+=(--nullu_lowest_layer "${NULLU_LOWEST_LAYER}") ARGS+=(--nullu_highest_layer "${NULLU_HIGHEST_LAYER}") fi # ============================================================================= # Run # ============================================================================= echo "" | tee -a "${LOGFILE}" if [ "${NUM_GPUS}" -gt 1 ]; then echo "Launching with torchrun on ${NUM_GPUS} GPUs..." | tee -a "${LOGFILE}" torchrun --nproc_per_node="${NUM_GPUS}" -m training.compare_activations "${ARGS[@]}" \ 2>&1 | tee -a "${LOGFILE}" else echo "Launching single-GPU mode..." | tee -a "${LOGFILE}" python -m training.compare_activations "${ARGS[@]}" \ 2>&1 | tee -a "${LOGFILE}" fi EXIT_CODE=${PIPESTATUS[0]} echo "" | tee -a "${LOGFILE}" echo "========================================" | tee -a "${LOGFILE}" if [ $EXIT_CODE -eq 0 ]; then echo "Status: SUCCESS" | tee -a "${LOGFILE}" else echo "Status: FAILED (exit code $EXIT_CODE)" | tee -a "${LOGFILE}" fi echo "Completed: $(date)" | tee -a "${LOGFILE}" echo "========================================" | tee -a "${LOGFILE}" exit $EXIT_CODE