File size: 3,901 Bytes
ca0269a
 
 
 
 
 
 
 
 
 
 
 
af6358c
ca0269a
 
 
 
 
 
 
 
 
 
af6358c
ca0269a
 
 
 
 
 
 
 
 
 
af6358c
ca0269a
 
 
 
 
 
 
 
 
 
af6358c
ca0269a
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
(MaximumNumberOfIterations 400 300 200 200)
(NumberOfSpatialSamples 2000)
(Transform "RecursiveBSplineTransform")
(NumberOfResolutions 4)
(FinalGridSpacingInPhysicalUnits 14)
(FixedImagePyramid "FixedGenericImagePyramid")
(MovingImagePyramid "MovingGenericImagePyramid")
(FixedImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
(MovingImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
// (GridSpacingSchedule 10.000000 5.000000 2.000000 1.000000)


(ImpactModelsPath0 "MIND/R1D2_3D.pt" "MRSeg/MRSeg.pt")
(ImpactDimension0 3 3)
(ImpactNumberOfChannels0 1 1)
(ImpactPatchSize0 0 0 0 0 0 0)
(ImpactVoxelSize0 6 6 6 6 6 6)
(ImpactLayersMask0 "1" "00000001")
(ImpactSubsetFeatures0 32 64)
(ImpactPCA0 0 0)
(ImpactDistance0 "L1" "Dice")
(ImpactLayersWeight0 0.2 0.8)

(ImpactModelsPath1 "MIND/R1D2_3D.pt" "MRSeg/MRSeg.pt")
(ImpactDimension1 3 3)
(ImpactNumberOfChannels1 1 1)
(ImpactPatchSize1 0 0 0 0 0 0)  
(ImpactVoxelSize1 3 3 3 3 3 3)
(ImpactLayersMask1 "1" "00000001")
(ImpactSubsetFeatures1 32 64)
(ImpactPCA1 0 0)
(ImpactDistance1 "L1" "Dice")
(ImpactLayersWeight1 0.3 0.7)

(ImpactModelsPath2 "MIND/R1D2_3D.pt" "MRSeg/MRSeg.pt")
(ImpactDimension2 3 3)
(ImpactNumberOfChannels2 1 1)
(ImpactPatchSize2 0 0 0 0 0 0)
(ImpactVoxelSize2 2 2 2 2 2 2)
(ImpactLayersMask2 "1"  "00000001")
(ImpactSubsetFeatures2 32 64)
(ImpactPCA2 0 0)
(ImpactDistance2 "L1" "Dice")
(ImpactLayersWeight2 0.6 0.4)

(ImpactModelsPath3 "MIND/R1D2_3D.pt" "MRSeg/MRSeg.pt")
(ImpactDimension3 3 3)
(ImpactNumberOfChannels3 1 1)
(ImpactPatchSize3 0 0 0 0 0 0)
(ImpactVoxelSize3 2 2 2 2 2 2)
(ImpactLayersMask3 "1"  "00000001")
(ImpactSubsetFeatures3 32 64)
(ImpactPCA3 0 0)
(ImpactDistance3 "L1" "Dice")
(ImpactLayersWeight3 0.7 0.3)


(ImpactUseMixedPrecision "true")
(ImpactFeaturesMapUpdateInterval -1)
(ImpactWriteFeatureMaps "false")
(ImpactMode "Static")
(ImpactGPU 0)


(Metric "Impact" "AdvancedMattesMutualInformation" "TransformBendingEnergyPenalty")
(Metric0Weight 1)
(Metric1Weight 0.4)
(Metric2Weight 10)

// imageTypes
(FixedInternalImagePixelType "float")
(MovingInternalImagePixelType "float")
(UseDirectionCosines "true")

// components
(Registration "MultiMetricMultiResolutionRegistration")
(BSplineTransformSplineOrder 3)
(UseCyclicTransform "false")

// transform
(AutomaticTransformInitialization "false")
(AutomaticTransformInitializationMethod "GeometricalCenter")
(AutomaticScalesEstimation "true")
(HowToCombineTransforms "Compose")


// optimizer
(Optimizer "AdaptiveStochasticGradientDescent")
(MaximumNumberOfSamplingAttempts 8)
(UseAdaptiveStepSizes "true")
(UseMultiThreadingForMetrics "true")
(ASGDParameterEstimationMethod "DisplacementDistribution")
//(MaximumStepLength 0.6602)
(SigmoidInitialTime 0.0)
(NoiseCompensation "true")
(NumberOfSamplesForExactGradient 4096)

// automatic
(AutomaticParameterEstimation "true")
//(SP_alpha 1)
//(SP_A 20.0)
//(SP a 400)
//(SigmoidMax 1.0)
//(SigmoidMin -0.8)
//(SigmoidScale 0.00000001)
//(NumberOfGradientMeasurements 10)
//(NumberOfJacobianMeasurements 1000)

(FixedKernelBSplineOrder 3)
(MovingKernelBSplineOrder 3)
(CheckNumberOfSamples "true")
(UseRelativeWeights "false")


// several
(WriteTransformParametersEachIteration "false")
(WriteTransformParametersEachResolution "false")
(ShowExactMetricValue "false")
(ErodeFixedMask "false")
(ErodeMovingMask "false")
(UseBinaryFormatForTransformationParameters "false")

// imageSampler
(Interpolator "BSplineInterpolator")
(ImageSampler "RandomCoordinate")
(NewSamplesEveryIteration "true")
(UseRandomSampleRegion "false")


// interpolator and resampler
(ResampleInterpolator "FinalBSplineInterpolator")
(FinalBSplineInterpolationOrder 3)
(BSplineInterpolationOrder 3)
(Resampler "DefaultResampler")
(WriteIterationInfo "false")
(WriteResultImage "false")
(DefaultPixelValue -1024)
(ResultImageFormat "mha")

(ITKTransformOutputFileNameExtension "itk.txt")
(WriteITKCompositeTransform "true")