Update ParameterMap_CBCT_generic_MRSeg.txt

ParameterMap_CBCT_generic_MRSeg.txt

@@ -1,71 +1,57 @@
-(MaximumNumberOfIterations 300 300 250 200)
+(MaximumNumberOfIterations 400 300 200 200)
 (NumberOfSpatialSamples 2000)
 (Transform "RecursiveBSplineTransform")
 (NumberOfResolutions 4)
 (FinalGridSpacingInPhysicalUnits 14)
 (FixedImagePyramid "FixedGenericImagePyramid")
 (MovingImagePyramid "MovingGenericImagePyramid")
-(FixedImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1)
-(MovingImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1)
+(FixedImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
+(MovingImagePyramidRescaleSchedule 1 1 1 1 1 1 1 1 1 1 1 1)
 // (GridSpacingSchedule 10.000000 5.000000 2.000000 1.000000)
 
-
-
-(ImpactModelsPath0 "TS/MRSegmentator_8_Layers.pt")
-(ImpactDimension0 3)
-(ImpactNumberOfChannels0 1)
-(ImpactPatchSize0 0 0 0)
-(ImpactVoxelSize0 3 3 3)
-(ImpactLayersMask0 "00000001")
-(ImpactSubsetFeatures0 64)
-(ImpactPCA0 0)
-(ImpactDistance0 "Dice")
-(ImpactLayersWeight0 1)
-
-(ImpactModelsPath1 "TS/MRSegmentator_8_Layers.pt")
-(ImpactDimension1 3)
-(ImpactNumberOfChannels1 1)
-(ImpactPatchSize1 0 0 0)  
-(ImpactVoxelSize1 3 3 3)
-(ImpactLayersMask1 "00000001")
-(ImpactSubsetFeatures1 64)
-(ImpactPCA1 0)
-(ImpactDistance1 "Dice")
-(ImpactLayersWeight1 1)
-
-(ImpactModelsPath2 "TS/MRSegmentator_8_Layers.pt")
-(ImpactDimension2 3)
-(ImpactNumberOfChannels2 1)
-(ImpactPatchSize2 0 0 0)
-(ImpactVoxelSize2 2 2 3)
-(ImpactLayersMask2 "01000001")
-(ImpactSubsetFeatures2 64 64)
+(ImpactModelsPath0 "MIND/R1D2.pt" "TS/MRSegmentator_8_Layers.pt")
+(ImpactDimension0 3 3)
+(ImpactNumberOfChannels0 1 1)
+(ImpactPatchSize0 0 0 0 0 0 0)
+(ImpactVoxelSize0 6 6 6 6 6 6)
+(ImpactLayersMask0 "1" "00000001")
+(ImpactSubsetFeatures0 32 64)
+(ImpactPCA0 0 0)
+(ImpactDistance0 "L1" "Dice")
+(ImpactLayersWeight0 0.2 0.8)
+
+(ImpactModelsPath1 "MIND/R1D2.pt" "TS/MRSegmentator_8_Layers.pt")
+(ImpactDimension1 3 3)
+(ImpactNumberOfChannels1 1 1)
+(ImpactPatchSize1 0 0 0 0 0 0)  
+(ImpactVoxelSize1 3 3 3 3 3 3)
+(ImpactLayersMask1 "1" "00000001")
+(ImpactSubsetFeatures1 32 64)
+(ImpactPCA1 0 0)
+(ImpactDistance1 "L1" "Dice")
+(ImpactLayersWeight1 0.3 0.7)
+
+(ImpactModelsPath2 "MIND/R1D2.pt" "TS/MRSegmentator_8_Layers.pt")
+(ImpactDimension2 3 3)
+(ImpactNumberOfChannels2 1 1)
+(ImpactPatchSize2 0 0 0 0 0 0)
+(ImpactVoxelSize2 2 2 2 2 2 2)
+(ImpactLayersMask2 "1"  "00000001")
+(ImpactSubsetFeatures2 32 64)
 (ImpactPCA2 0 0)
 (ImpactDistance2 "L1" "Dice")
-(ImpactLayersWeight2 0.3 0.7)
-
-(ImpactModelsPath3 "TS/MRSegmentator_8_Layers.pt")
-(ImpactDimension3 3)
-(ImpactNumberOfChannels3 1)
-(ImpactPatchSize3 0 0 0)
-(ImpactVoxelSize3 2 2 3)
-(ImpactLayersMask3 "01000001")
-(ImpactSubsetFeatures3 64 64)
+(ImpactLayersWeight2 0.6 0.4)
+
+(ImpactModelsPath3 "MIND/R1D2.pt" "TS/MRSegmentator_8_Layers.pt")
+(ImpactDimension3 3 3)
+(ImpactNumberOfChannels3 1 1)
+(ImpactPatchSize3 0 0 0 0 0 0)
+(ImpactVoxelSize3 2 2 2 2 2 2)
+(ImpactLayersMask3 "1"  "00000001")
+(ImpactSubsetFeatures3 32 64)
 (ImpactPCA3 0 0)
 (ImpactDistance3 "L1" "Dice")
-(ImpactLayersWeight3 0.5 0.5)
-
-(ImpactModelsPath4 "TS/MRSegmentator_8_Layers.pt")
-(ImpactDimension4 3)
-(ImpactNumberOfChannels4 1)
-(ImpactPatchSize4 0 0 0)
-(ImpactVoxelSize4 2 2 3)
-(ImpactLayersMask4 "01000000")
-(ImpactSubsetFeatures4 64)
-(ImpactPCA4 0)
-(ImpactDistance4 "L1")
-(ImpactLayersWeight4 1)
-
+(ImpactLayersWeight3 0.7 0.3)
 
 (ImpactUseMixedPrecision "true")
 (ImpactFeaturesMapUpdateInterval -1)
@@ -73,7 +59,6 @@
 (ImpactMode "Static")
 (ImpactGPU 0)
 
-
 (Metric "Impact" "AdvancedMattesMutualInformation" "TransformBendingEnergyPenalty")
 (Metric0Weight 1)
 (Metric1Weight 0.4)