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{
"display_name": "Segmentation: TotalSegmentator MRI",
"short_description": "<b>Description:</b><br>KonfAI-accelerated adaptation of <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator MRI</a>, delivering fast multimodal segmentation of <b>80 major anatomical structures</b> from <b>MRI and CT</b> scans, with significantly reduced inference overhead vs. the original nnU-Net workflow.<br><br><b>How to cite:</b><br><cite>T. Akinci D’Antonoli et al., <i>TotalSegmentator MRI: Robust Sequence-Independent Segmentation of Multiple Anatomic Structures in MRI</i>, Radiology, 2025.</cite>",
"description": "<b>Description:</b><br>This model integrates TotalSegmentator MRI into the <b>KonfAI</b> inference framework to accelerate deployment in MRI/CT multimodal workflows.<br><br><b>Capabilities:</b><br>• Automatic segmentation of <b>80 major anatomical structures</b> (organs, vessels, skeleton, digestive system)<br>• Robust to <b>sequence variations</b> across scanners, contrasts, acquisition planes, and sites<br>• High-resolution input: <b>1.5 mm isotropic</b><br><br><b>Training data:</b><br>Trained on a highly diverse clinical dataset of <b>1143 scans</b> including <b>616 MRI</b> (30 scanners, 4 sites, many contrast types) and <b>527 CT</b> scans, with expert-validated manual segmentations <br><br><b>How to cite:</b><br><cite>T. Akinci D’Antonoli et al., <i>TotalSegmentator MRI: Robust Sequence-Independent Segmentation of Multiple Anatomic Structures in MRI</i>, Radiology, 2025.</cite>",
"tta": 0,
"mc_dropout": 0,
"models": ["M850.pt", "M851.pt"],
"inputs": {
"Volume": {
"display_name": "Input Volume",
"volume_type": "VOLUME",
"required": true
}
},
"outputs": {
"Segmentation": {
"display_name": "Segmentation",
"volume_type": "SEGMENTATION",
"required": true
}
},
"inputs_evaluations": {
"Image": {
"Evaluation.yml": {
"Segmentation": {
"display_name": "Output Segmentation",
"volume_type": "VOLUME",
"required": true
},
"GT_Segmentation": {
"display_name": "GT Segmentation",
"volume_type": "VOLUME",
"required": true
}
}
}
},
"terminology": {
"1": { "name": "spleen", "color": "#4B79EA" },
"2": { "name": "kidney_right", "color": "#A8EA4B" },
"3": { "name": "kidney_left", "color": "#EA4BD7" },
"4": { "name": "gallbladder", "color": "#4BEAC0" },
"5": { "name": "liver", "color": "#EA924B" },
"6": { "name": "stomach", "color": "#634BEA" },
"7": { "name": "pancreas", "color": "#4BEA53" },
"8": { "name": "adrenal_gland_right", "color": "#EA4B82" },
"9": { "name": "adrenal_gland_left", "color": "#B0EA4B" },
"10": { "name": "lung_left", "color": "#FABEBE" },
"11": { "name": "lung_right", "color": "#008080" },
"12": { "name": "esophagus", "color": "#EA4B89" },
"13": { "name": "small_bowel", "color": "#4BEAB2" },
"14": { "name": "duodenum", "color": "#EA844B" },
"15": { "name": "colon", "color": "#554BEA" },
"16": { "name": "urinary_bladder", "color": "#FB9A99" },
"17": { "name": "prostate", "color": "#EA4B90" },
"18": { "name": "sacrum", "color": "#B15928" },
"19": { "name": "vertebrae", "color": "#6A3D9A" },
"20": { "name": "intervertebral_discs", "color": "#CAB2D6" },
"21": { "name": "spinal_cord", "color": "#EAEC4B" },
"22": { "name": "heart", "color": "#E6BEFF" },
"23": { "name": "aorta", "color": "#9A6324" },
"24": { "name": "inferior_vena_cava", "color": "#FFFAC8" },
"25": { "name": "portal_vein_and_splenic_vein", "color": "#800000" },
"26": { "name": "iliac_artery_left", "color": "#AaffC3" },
"27": { "name": "iliac_artery_right", "color": "#808000" },
"28": { "name": "iliac_vena_left", "color": "#FFD8B1" },
"29": { "name": "iliac_vena_right", "color": "#000075" },
"30": { "name": "humerus_left", "color": "#A6CEE3" },
"31": { "name": "humerus_right", "color": "#B2DF8A" },
"32": { "name": "scapula_left", "color": "#1F78B4" },
"33": { "name": "scapula_right", "color": "#33A02C" },
"34": { "name": "clavicula_left", "color": "#BC80BD" },
"35": { "name": "clavicula_right", "color": "#FFED6F" },
"36": { "name": "femur_left", "color": "#CAB2D6" },
"37": { "name": "femur_right", "color": "#FFFF99" },
"38": { "name": "hip_left", "color": "#A6CEE3" },
"39": { "name": "hip_right", "color": "#B2DF8A" },
"40": { "name": "gluteus_maximus_left", "color": "#66A61E" },
"41": { "name": "gluteus_maximus_right", "color": "#E6AB02" },
"42": { "name": "gluteus_medius_left", "color": "#A6761D" },
"43": { "name": "gluteus_medius_right", "color": "#666666" },
"44": { "name": "gluteus_minimus_left", "color": "#7FC97F" },
"45": { "name": "gluteus_minimus_right", "color": "#BEAED4" },
"46": { "name": "autochthon_left", "color": "#1B9E77" },
"47": { "name": "autochthon_right", "color": "#D95F02" },
"48": { "name": "iliopsoas_left", "color": "#7570B3" },
"49": { "name": "iliopsoas_right", "color": "#E7298A" },
"50": { "name": "brain", "color": "#8DD3C7" }
}
} |