| { | |
| "display_name": "Segmentation: Total Segmentator", | |
| "short_description": "<b>Description:</b><br>KonfAI-accelerated adaptation of <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator</a>, delivering fast whole-body CT segmentation of <b>118 anatomical structures</b> (1.5 mm resolution) with reduced inference cost compared to the original nnU-Net implementation.<br><br><b>How to cite:</b><br><cite>J. Wasserthal et al., <i>TotalSegmentator: Robust Segmentation of 104 Anatomical Structures in CT Images</i>, Radiology: AI, 2023.</cite>", | |
| "description": "<b>Description:</b><br>This model is an optimized adaptation of the original <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator</a> for the <b>KonfAI</b> deep learning framework.<br><br><b>Capabilities:</b><br>• Segmentation of <b>118 anatomical classes</b> covering organs, bones, muscles, and vessels<br>• Enhanced runtime and memory efficiency vs. the original nnU-Net implementation<br>• High-resolution input: <b>1.5 mm isotropic</b><br><br><b>Training data:</b><br>Trained on a diverse dataset of <b>1204 whole-body CT examinations</b> including different scanners, acquisition settings, contrast phases, and major pathologies (27 organs, 59 bones, 10 muscles, 8 vessels), with manual expert-reviewed annotations<br><br><b>How to cite:</b><br><cite>J. Wasserthal et al., <i>TotalSegmentator: Robust Segmentation of 104 Anatomical Structures in CT Images</i>, Radiology: AI, 2023.</cite>", | |
| "tta": 0, | |
| "mc_dropout": 0, | |
| "models": ["M291.pt", "M292.pt", "M293.pt", "M294.pt", "M295.pt"], | |
| "inputs": { | |
| "Volume": { | |
| "display_name": "Input Volume", | |
| "volume_type": "VOLUME", | |
| "required": true | |
| } | |
| }, | |
| "outputs": { | |
| "Segmentation": { | |
| "display_name": "Segmentation", | |
| "volume_type": "SEGMENTATION", | |
| "required": true | |
| } | |
| }, | |
| "inputs_evaluations": { | |
| "Image": { | |
| "Evaluation.yml": { | |
| "Segmentation": { | |
| "display_name": "Output Segmentation", | |
| "volume_type": "VOLUME", | |
| "required": true | |
| }, | |
| "GT_Segmentation": { | |
| "display_name": "GT Segmentation", | |
| "volume_type": "VOLUME", | |
| "required": true | |
| } | |
| } | |
| } | |
| }, | |
| "terminology": { | |
| "1": { "name": "spleen", "color": "#4B79EA" }, | |
| "2": { "name": "kidney_right", "color": "#A8EA4B" }, | |
| "3": { "name": "kidney_left", "color": "#EA4BD7" }, | |
| "4": { "name": "gallbladder", "color": "#4BEAC0" }, | |
| "5": { "name": "liver", "color": "#EA924B" }, | |
| "6": { "name": "stomach", "color": "#634BEA" }, | |
| "7": { "name": "pancreas", "color": "#4BEA53" }, | |
| "8": { "name": "adrenal_gland_right", "color": "#EA4B82" }, | |
| "9": { "name": "adrenal_gland_left", "color": "#B0EA4B" }, | |
| "10": { "name": "lung_upper_lobe_left", "color": "#EA4BE0" }, | |
| "11": { "name": "lung_lower_lobe_left", "color": "#4BEAB9" }, | |
| "12": { "name": "lung_upper_lobe_right", "color": "#EA8B4B" }, | |
| "13": { "name": "lung_middle_lobe_right", "color": "#5C4BEA" }, | |
| "14": { "name": "lung_lower_lobe_right", "color": "#4BEA5A" }, | |
| "15": { "name": "esophagus", "color": "#EA4B89" }, | |
| "16": { "name": "trachea", "color": "#B7EA4B" }, | |
| "17": { "name": "thyroid_gland", "color": "#EA4BE8" }, | |
| "18": { "name": "small_bowel", "color": "#4BEAB2" }, | |
| "19": { "name": "duodenum", "color": "#EA844B" }, | |
| "20": { "name": "colon", "color": "#554BEA" }, | |
| "21": { "name": "urinary_bladder", "color": "#4BEA61" }, | |
| "22": { "name": "prostate", "color": "#EA4B90" }, | |
| "23": { "name": "kidney_cyst_left", "color": "#BEEA4B" }, | |
| "24": { "name": "kidney_cyst_right", "color": "#E94BEA" }, | |
| "25": { "name": "sacrum", "color": "#4BEAAB" }, | |
| "26": { "name": "vertebrae_S1", "color": "#EA7D4B" }, | |
| "27": { "name": "vertebrae_L5", "color": "#4E4BEA" }, | |
| "28": { "name": "vertebrae_L4", "color": "#4BEA68" }, | |
| "29": { "name": "vertebrae_L3", "color": "#EA4B97" }, | |
| "30": { "name": "vertebrae_L2", "color": "#C5EA4B" }, | |
| "31": { "name": "vertebrae_L1", "color": "#E24BEA" }, | |
| "32": { "name": "vertebrae_T12", "color": "#4BEAA4" }, | |
| "33": { "name": "vertebrae_T11", "color": "#EA764B" }, | |
| "34": { "name": "vertebrae_T10", "color": "#4B55EA" }, | |
| "35": { "name": "vertebrae_T9", "color": "#4BEA6F" }, | |
| "36": { "name": "vertebrae_T8", "color": "#EA4B9F" }, | |
| "37": { "name": "vertebrae_T7", "color": "#CCEA4B" }, | |
| "38": { "name": "vertebrae_T6", "color": "#DB4BEA" }, | |
| "39": { "name": "vertebrae_T5", "color": "#4BEA9D" }, | |
| "40": { "name": "vertebrae_T4", "color": "#EA6F4B" }, | |
| "41": { "name": "vertebrae_T3", "color": "#4B5CEA" }, | |
| "42": { "name": "vertebrae_T2", "color": "#4BEA76" }, | |
| "43": { "name": "vertebrae_T1", "color": "#EA4BA6" }, | |
| "44": { "name": "vertebrae_C7", "color": "#D3EA4B" }, | |
| "45": { "name": "vertebrae_C6", "color": "#D44BEA" }, | |
| "46": { "name": "vertebrae_C5", "color": "#4BEA96" }, | |
| "47": { "name": "vertebrae_C4", "color": "#EA684B" }, | |
| "48": { "name": "vertebrae_C3", "color": "#4B63EA" }, | |
| "49": { "name": "vertebrae_C2", "color": "#4BEA7D" }, | |
| "50": { "name": "vertebrae_C1", "color": "#EA4BAD" }, | |
| "51": { "name": "heart", "color": "#DAEA4B" }, | |
| "52": { "name": "aorta", "color": "#CD4BEA" }, | |
| "53": { "name": "pulmonary_vein", "color": "#4BEA8F" }, | |
| "54": { "name": "brachiocephalic_trunk", "color": "#EA614B" }, | |
| "55": { "name": "subclavian_artery_right", "color": "#4B6AEA" }, | |
| "56": { "name": "subclavian_artery_left", "color": "#4BEA84" }, | |
| "57": { "name": "common_carotid_artery_right", "color": "#EA4BB4" }, | |
| "58": { "name": "common_carotid_artery_left", "color": "#E1EA4B" }, | |
| "59": { "name": "brachiocephalic_vein_left", "color": "#C64BEA" }, | |
| "60": { "name": "brachiocephalic_vein_right", "color": "#4BEA88" }, | |
| "61": { "name": "atrial_appendage_left", "color": "#EA5B4B" }, | |
| "62": { "name": "superior_vena_cava", "color": "#4B71EA" }, | |
| "63": { "name": "inferior_vena_cava", "color": "#4BEA8B" }, | |
| "64": { "name": "portal_vein_and_splenic_vein", "color": "#EA4BBA" }, | |
| "65": { "name": "iliac_artery_left", "color": "#E8EA4B" }, | |
| "66": { "name": "iliac_artery_right", "color": "#BF4BEA" }, | |
| "67": { "name": "iliac_vena_left", "color": "#4BEA82" }, | |
| "68": { "name": "iliac_vena_right", "color": "#EA544B" }, | |
| "69": { "name": "humerus_left", "color": "#4B78EA" }, | |
| "70": { "name": "humerus_right", "color": "#4BEA92" }, | |
| "71": { "name": "scapula_left", "color": "#EA4BC1" }, | |
| "72": { "name": "scapula_right", "color": "#EAEA4B" }, | |
| "73": { "name": "clavicula_left", "color": "#B84BEA" }, | |
| "74": { "name": "clavicula_right", "color": "#4BEA79" }, | |
| "75": { "name": "femur_left", "color": "#EA4D4B" }, | |
| "76": { "name": "femur_right", "color": "#4B7FEA" }, | |
| "77": { "name": "hip_left", "color": "#4BEA99" }, | |
| "78": { "name": "hip_right", "color": "#EA4BC8" }, | |
| "79": { "name": "spinal_cord", "color": "#EAEC4B" }, | |
| "80": { "name": "gluteus_maximus_left", "color": "#B14BEA" }, | |
| "81": { "name": "gluteus_maximus_right", "color": "#4BEA72" }, | |
| "82": { "name": "gluteus_medius_left", "color": "#EA4B54" }, | |
| "83": { "name": "gluteus_medius_right", "color": "#4B86EA" }, | |
| "84": { "name": "gluteus_minimus_left", "color": "#4BEAA0" }, | |
| "85": { "name": "gluteus_minimus_right", "color": "#EA4BCF" }, | |
| "86": { "name": "autochthon_left", "color": "#EAF34B" }, | |
| "87": { "name": "autochthon_right", "color": "#AA4BEA" }, | |
| "88": { "name": "iliopsoas_left", "color": "#4BEA6B" }, | |
| "89": { "name": "iliopsoas_right", "color": "#EA4B5B" }, | |
| "90": { "name": "brain", "color": "#4B8DEA" }, | |
| "91": { "name": "skull", "color": "#4BEAA7" }, | |
| "92": { "name": "rib_left_1", "color": "#EA4BD6" }, | |
| "93": { "name": "rib_left_2", "color": "#EAFC4B" }, | |
| "94": { "name": "rib_left_3", "color": "#A34BEA" }, | |
| "95": { "name": "rib_left_4", "color": "#4BEA64" }, | |
| "96": { "name": "rib_left_5", "color": "#EA4B62" }, | |
| "97": { "name": "rib_left_6", "color": "#4B94EA" }, | |
| "98": { "name": "rib_left_7", "color": "#4BEAAE" }, | |
| "99": { "name": "rib_left_8", "color": "#EA4BDD" }, | |
| "100": { "name": "rib_left_9", "color": "#F0EA4B" }, | |
| "101": { "name": "rib_left_10", "color": "#9C4BEA" }, | |
| "102": { "name": "rib_left_11", "color": "#4BEA5D" }, | |
| "103": { "name": "rib_left_12", "color": "#EA4B69" }, | |
| "104": { "name": "rib_right_1", "color": "#4B9BEA" }, | |
| "105": { "name": "rib_right_2", "color": "#4BEAB5" }, | |
| "106": { "name": "rib_right_3", "color": "#EA4BE4" }, | |
| "107": { "name": "rib_right_4", "color": "#E9EA4B" }, | |
| "108": { "name": "rib_right_5", "color": "#954BEA" }, | |
| "109": { "name": "rib_right_6", "color": "#4BEA56" }, | |
| "110": { "name": "rib_right_7", "color": "#EA4B70" }, | |
| "111": { "name": "rib_right_8", "color": "#4BA2EA" }, | |
| "112": { "name": "rib_right_9", "color": "#4BEABC" }, | |
| "113": { "name": "rib_right_10", "color": "#EA4BEB" }, | |
| "114": { "name": "rib_right_11", "color": "#E2EA4B" }, | |
| "115": { "name": "rib_right_12", "color": "#8E4BEA" }, | |
| "116": { "name": "sternum", "color": "#4BEA4F" }, | |
| "117": { "name": "costal_cartilages", "color": "#61EA4B" } | |
| } | |
| } |