| { |
| "display_name": "Segmentation: TotalSegmentator MRI 3mm", |
| "short_description": "<b>Description:</b><br>Lightweight KonfAI adaptation of <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator MRI</a>, enabling fast multimodal segmentation of <b>50 key anatomical structures</b> from <b>MRI and CT</b> scans at <b>3 mm</b> resolution, greatly reducing memory usage and inference time compared to the original nnU-Net workflow.<br><br><b>How to cite:</b><br><cite>T. Akinci D’Antonoli et al., <i>TotalSegmentator MRI: Robust Sequence-Independent Segmentation of Multiple Anatomic Structures in MRI</i>, Radiology, 2025.</cite>", |
| "description": "<b>Description:</b><br>This model integrates the reduced-resolution MRI-3mm configuration of TotalSegmentator into the <b>KonfAI</b> accelerated inference pipeline for efficient MRI/CT deployment.<br><br><b>Capabilities:</b><br>• Segmentation of <b>50 essential anatomical structures</b> (major organs, key bones, large vessels)<br>• <b>3 mm</b> isotropic input for high-throughput processing and lower GPU requirements<br>• Robust to acquisition variability including scanner type, contrast, and sequence parameters<br><br><b>Training data:</b><br>Trained on a diverse cohort of <b>1143 clinical scans</b> including <b>616 MRI</b> (multi-site, multi-scanner, multi-sequence) and <b>527 CT</b>, with expert-validated reference masks<br><br>><b>How to cite:</b><br><cite>T. Akinci D’Antonoli et al., <i>TotalSegmentator MRI: Robust Sequence-Independent Segmentation of Multiple Anatomic Structures in MRI</i>, Radiology, 2025.</cite>", |
| "tta": 0, |
| "mc_dropout": 0, |
| "models": ["M852.pt"], |
| "inputs": { |
| "Volume": { |
| "display_name": "Input Volume", |
| "volume_type": "VOLUME", |
| "required": true |
| } |
| }, |
| "outputs": { |
| "Segmentation": { |
| "display_name": "Segmentation", |
| "volume_type": "SEGMENTATION", |
| "required": true |
| } |
| }, |
| "inputs_evaluations": { |
| "Image": { |
| "Evaluation.yml": { |
| "Segmentation": { |
| "display_name": "Output Segmentation", |
| "volume_type": "VOLUME", |
| "required": true |
| }, |
| "GT_Segmentation": { |
| "display_name": "GT Segmentation", |
| "volume_type": "VOLUME", |
| "required": true |
| } |
| } |
| } |
| }, |
| "terminology": { |
| "1": { "name": "spleen", "color": "#4B79EA" }, |
| "2": { "name": "kidney_right", "color": "#A8EA4B" }, |
| "3": { "name": "kidney_left", "color": "#EA4BD7" }, |
| "4": { "name": "gallbladder", "color": "#4BEAC0" }, |
| "5": { "name": "liver", "color": "#EA924B" }, |
| "6": { "name": "stomach", "color": "#634BEA" }, |
| "7": { "name": "pancreas", "color": "#4BEA53" }, |
| "8": { "name": "adrenal_gland_right", "color": "#EA4B82" }, |
| "9": { "name": "adrenal_gland_left", "color": "#B0EA4B" }, |
| "10": { "name": "lung_left", "color": "#FABEBE" }, |
| "11": { "name": "lung_right", "color": "#008080" }, |
| "12": { "name": "esophagus", "color": "#EA4B89" }, |
| "13": { "name": "small_bowel", "color": "#4BEAB2" }, |
| "14": { "name": "duodenum", "color": "#EA844B" }, |
| "15": { "name": "colon", "color": "#554BEA" }, |
| "16": { "name": "urinary_bladder", "color": "#FB9A99" }, |
| "17": { "name": "prostate", "color": "#EA4B90" }, |
| "18": { "name": "sacrum", "color": "#B15928" }, |
| "19": { "name": "vertebrae", "color": "#6A3D9A" }, |
| "20": { "name": "intervertebral_discs", "color": "#CAB2D6" }, |
| "21": { "name": "spinal_cord", "color": "#EAEC4B" }, |
| "22": { "name": "heart", "color": "#E6BEFF" }, |
| "23": { "name": "aorta", "color": "#9A6324" }, |
| "24": { "name": "inferior_vena_cava", "color": "#FFFAC8" }, |
| "25": { "name": "portal_vein_and_splenic_vein", "color": "#800000" }, |
| "26": { "name": "iliac_artery_left", "color": "#AaffC3" }, |
| "27": { "name": "iliac_artery_right", "color": "#808000" }, |
| "28": { "name": "iliac_vena_left", "color": "#FFD8B1" }, |
| "29": { "name": "iliac_vena_right", "color": "#000075" }, |
| "30": { "name": "humerus_left", "color": "#A6CEE3" }, |
| "31": { "name": "humerus_right", "color": "#B2DF8A" }, |
| "32": { "name": "scapula_left", "color": "#1F78B4" }, |
| "33": { "name": "scapula_right", "color": "#33A02C" }, |
| "34": { "name": "clavicula_left", "color": "#BC80BD" }, |
| "35": { "name": "clavicula_right", "color": "#FFED6F" }, |
| "36": { "name": "femur_left", "color": "#CAB2D6" }, |
| "37": { "name": "femur_right", "color": "#FFFF99" }, |
| "38": { "name": "hip_left", "color": "#A6CEE3" }, |
| "39": { "name": "hip_right", "color": "#B2DF8A" }, |
| "40": { "name": "gluteus_maximus_left", "color": "#66A61E" }, |
| "41": { "name": "gluteus_maximus_right", "color": "#E6AB02" }, |
| "42": { "name": "gluteus_medius_left", "color": "#A6761D" }, |
| "43": { "name": "gluteus_medius_right", "color": "#666666" }, |
| "44": { "name": "gluteus_minimus_left", "color": "#7FC97F" }, |
| "45": { "name": "gluteus_minimus_right", "color": "#BEAED4" }, |
| "46": { "name": "autochthon_left", "color": "#1B9E77" }, |
| "47": { "name": "autochthon_right", "color": "#D95F02" }, |
| "48": { "name": "iliopsoas_left", "color": "#7570B3" }, |
| "49": { "name": "iliopsoas_right", "color": "#E7298A" }, |
| "50": { "name": "brain", "color": "#8DD3C7" } |
| } |
| } |
