VBoussot commited on
Commit
cb335eb
·
verified ·
1 Parent(s): b4b8b13

Update total/app.json

Browse files
Files changed (1) hide show
  1. total/app.json +118 -117
total/app.json CHANGED
@@ -4,123 +4,124 @@
4
  "description": "<b>Description:</b><br>This model is an optimized adaptation of the original <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator</a> for the <b>KonfAI</b> deep learning framework.<br><br><b>Capabilities:</b><br>• Segmentation of <b>118 anatomical classes</b> covering organs, bones, muscles, and vessels<br>• Enhanced runtime and memory efficiency vs. the original nnU-Net implementation<br>• High-resolution input: <b>1.5 mm isotropic</b><br><br><b>Training data:</b><br>Trained on a diverse dataset of <b>1204 whole-body CT examinations</b> including different scanners, acquisition settings, contrast phases, and major pathologies (27 organs, 59 bones, 10 muscles, 8 vessels), with manual expert-reviewed annotations<br><br><b>How to cite:</b><br><cite>J. Wasserthal et al., <i>TotalSegmentator: Robust Segmentation of 104 Anatomical Structures in CT Images</i>, Radiology: AI, 2023.</cite>",
5
  "tta": 0,
6
  "mc_dropout": 0,
 
7
  "terminology": {
8
- "1": "spleen",
9
- "2": "kidney_right",
10
- "3": "kidney_left",
11
- "4": "gallbladder",
12
- "5": "liver",
13
- "6": "stomach",
14
- "7": "pancreas",
15
- "8": "adrenal_gland_right",
16
- "9": "adrenal_gland_left",
17
- "10": "lung_upper_lobe_left",
18
- "11": "lung_lower_lobe_left",
19
- "12": "lung_upper_lobe_right",
20
- "13": "lung_middle_lobe_right",
21
- "14": "lung_lower_lobe_right",
22
- "15": "esophagus",
23
- "16": "trachea",
24
- "17": "thyroid_gland",
25
- "18": "small_bowel",
26
- "19": "duodenum",
27
- "20": "colon",
28
- "21": "urinary_bladder",
29
- "22": "prostate",
30
- "23": "kidney_cyst_left",
31
- "24": "kidney_cyst_right",
32
- "25": "sacrum",
33
- "26": "vertebrae_S1",
34
- "27": "vertebrae_L5",
35
- "28": "vertebrae_L4",
36
- "29": "vertebrae_L3",
37
- "30": "vertebrae_L2",
38
- "31": "vertebrae_L1",
39
- "32": "vertebrae_T12",
40
- "33": "vertebrae_T11",
41
- "34": "vertebrae_T10",
42
- "35": "vertebrae_T9",
43
- "36": "vertebrae_T8",
44
- "37": "vertebrae_T7",
45
- "38": "vertebrae_T6",
46
- "39": "vertebrae_T5",
47
- "40": "vertebrae_T4",
48
- "41": "vertebrae_T3",
49
- "42": "vertebrae_T2",
50
- "43": "vertebrae_T1",
51
- "44": "vertebrae_C7",
52
- "45": "vertebrae_C6",
53
- "46": "vertebrae_C5",
54
- "47": "vertebrae_C4",
55
- "48": "vertebrae_C3",
56
- "49": "vertebrae_C2",
57
- "50": "vertebrae_C1",
58
- "51": "heart",
59
- "52": "aorta",
60
- "53": "pulmonary_vein",
61
- "54": "brachiocephalic_trunk",
62
- "55": "subclavian_artery_right",
63
- "56": "subclavian_artery_left",
64
- "57": "common_carotid_artery_right",
65
- "58": "common_carotid_artery_left",
66
- "59": "brachiocephalic_vein_left",
67
- "60": "brachiocephalic_vein_right",
68
- "61": "atrial_appendage_left",
69
- "62": "superior_vena_cava",
70
- "63": "inferior_vena_cava",
71
- "64": "portal_vein_and_splenic_vein",
72
- "65": "iliac_artery_left",
73
- "66": "iliac_artery_right",
74
- "67": "iliac_vena_left",
75
- "68": "iliac_vena_right",
76
- "69": "humerus_left",
77
- "70": "humerus_right",
78
- "71": "scapula_left",
79
- "72": "scapula_right",
80
- "73": "clavicula_left",
81
- "74": "clavicula_right",
82
- "75": "femur_left",
83
- "76": "femur_right",
84
- "77": "hip_left",
85
- "78": "hip_right",
86
- "79": "spinal_cord",
87
- "80": "gluteus_maximus_left",
88
- "81": "gluteus_maximus_right",
89
- "82": "gluteus_medius_left",
90
- "83": "gluteus_medius_right",
91
- "84": "gluteus_minimus_left",
92
- "85": "gluteus_minimus_right",
93
- "86": "autochthon_left",
94
- "87": "autochthon_right",
95
- "88": "iliopsoas_left",
96
- "89": "iliopsoas_right",
97
- "90": "brain",
98
- "91": "skull",
99
- "92": "rib_left_1",
100
- "93": "rib_left_2",
101
- "94": "rib_left_3",
102
- "95": "rib_left_4",
103
- "96": "rib_left_5",
104
- "97": "rib_left_6",
105
- "98": "rib_left_7",
106
- "99": "rib_left_8",
107
- "100": "rib_left_9",
108
- "101": "rib_left_10",
109
- "102": "rib_left_11",
110
- "103": "rib_left_12",
111
- "104": "rib_right_1",
112
- "105": "rib_right_2",
113
- "106": "rib_right_3",
114
- "107": "rib_right_4",
115
- "108": "rib_right_5",
116
- "109": "rib_right_6",
117
- "110": "rib_right_7",
118
- "111": "rib_right_8",
119
- "112": "rib_right_9",
120
- "113": "rib_right_10",
121
- "114": "rib_right_11",
122
- "115": "rib_right_12",
123
- "116": "sternum",
124
- "117": "costal_cartilages"
125
  }
126
  }
 
4
  "description": "<b>Description:</b><br>This model is an optimized adaptation of the original <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator</a> for the <b>KonfAI</b> deep learning framework.<br><br><b>Capabilities:</b><br>• Segmentation of <b>118 anatomical classes</b> covering organs, bones, muscles, and vessels<br>• Enhanced runtime and memory efficiency vs. the original nnU-Net implementation<br>• High-resolution input: <b>1.5 mm isotropic</b><br><br><b>Training data:</b><br>Trained on a diverse dataset of <b>1204 whole-body CT examinations</b> including different scanners, acquisition settings, contrast phases, and major pathologies (27 organs, 59 bones, 10 muscles, 8 vessels), with manual expert-reviewed annotations<br><br><b>How to cite:</b><br><cite>J. Wasserthal et al., <i>TotalSegmentator: Robust Segmentation of 104 Anatomical Structures in CT Images</i>, Radiology: AI, 2023.</cite>",
5
  "tta": 0,
6
  "mc_dropout": 0,
7
+ {
8
  "terminology": {
9
+ "1": { "name": "spleen", "color": "#4B79EA" },
10
+ "2": { "name": "kidney_right", "color": "#A8EA4B" },
11
+ "3": { "name": "kidney_left", "color": "#EA4BD7" },
12
+ "4": { "name": "gallbladder", "color": "#4BEAC0" },
13
+ "5": { "name": "liver", "color": "#EA924B" },
14
+ "6": { "name": "stomach", "color": "#634BEA" },
15
+ "7": { "name": "pancreas", "color": "#4BEA53" },
16
+ "8": { "name": "adrenal_gland_right", "color": "#EA4B82" },
17
+ "9": { "name": "adrenal_gland_left", "color": "#B0EA4B" },
18
+ "10": { "name": "lung_upper_lobe_left", "color": "#EA4BE0" },
19
+ "11": { "name": "lung_lower_lobe_left", "color": "#4BEAB9" },
20
+ "12": { "name": "lung_upper_lobe_right", "color": "#EA8B4B" },
21
+ "13": { "name": "lung_middle_lobe_right", "color": "#5C4BEA" },
22
+ "14": { "name": "lung_lower_lobe_right", "color": "#4BEA5A" },
23
+ "15": { "name": "esophagus", "color": "#EA4B89" },
24
+ "16": { "name": "trachea", "color": "#B7EA4B" },
25
+ "17": { "name": "thyroid_gland", "color": "#EA4BE8" },
26
+ "18": { "name": "small_bowel", "color": "#4BEAB2" },
27
+ "19": { "name": "duodenum", "color": "#EA844B" },
28
+ "20": { "name": "colon", "color": "#554BEA" },
29
+ "21": { "name": "urinary_bladder", "color": "#4BEA61" },
30
+ "22": { "name": "prostate", "color": "#EA4B90" },
31
+ "23": { "name": "kidney_cyst_left", "color": "#BEEA4B" },
32
+ "24": { "name": "kidney_cyst_right", "color": "#E94BEA" },
33
+ "25": { "name": "sacrum", "color": "#4BEAAB" },
34
+ "26": { "name": "vertebrae_S1", "color": "#EA7D4B" },
35
+ "27": { "name": "vertebrae_L5", "color": "#4E4BEA" },
36
+ "28": { "name": "vertebrae_L4", "color": "#4BEA68" },
37
+ "29": { "name": "vertebrae_L3", "color": "#EA4B97" },
38
+ "30": { "name": "vertebrae_L2", "color": "#C5EA4B" },
39
+ "31": { "name": "vertebrae_L1", "color": "#E24BEA" },
40
+ "32": { "name": "vertebrae_T12", "color": "#4BEAA4" },
41
+ "33": { "name": "vertebrae_T11", "color": "#EA764B" },
42
+ "34": { "name": "vertebrae_T10", "color": "#4B55EA" },
43
+ "35": { "name": "vertebrae_T9", "color": "#4BEA6F" },
44
+ "36": { "name": "vertebrae_T8", "color": "#EA4B9F" },
45
+ "37": { "name": "vertebrae_T7", "color": "#CCEA4B" },
46
+ "38": { "name": "vertebrae_T6", "color": "#DB4BEA" },
47
+ "39": { "name": "vertebrae_T5", "color": "#4BEA9D" },
48
+ "40": { "name": "vertebrae_T4", "color": "#EA6F4B" },
49
+ "41": { "name": "vertebrae_T3", "color": "#4B5CEA" },
50
+ "42": { "name": "vertebrae_T2", "color": "#4BEA76" },
51
+ "43": { "name": "vertebrae_T1", "color": "#EA4BA6" },
52
+ "44": { "name": "vertebrae_C7", "color": "#D3EA4B" },
53
+ "45": { "name": "vertebrae_C6", "color": "#D44BEA" },
54
+ "46": { "name": "vertebrae_C5", "color": "#4BEA96" },
55
+ "47": { "name": "vertebrae_C4", "color": "#EA684B" },
56
+ "48": { "name": "vertebrae_C3", "color": "#4B63EA" },
57
+ "49": { "name": "vertebrae_C2", "color": "#4BEA7D" },
58
+ "50": { "name": "vertebrae_C1", "color": "#EA4BAD" },
59
+ "51": { "name": "heart", "color": "#DAEA4B" },
60
+ "52": { "name": "aorta", "color": "#CD4BEA" },
61
+ "53": { "name": "pulmonary_vein", "color": "#4BEA8F" },
62
+ "54": { "name": "brachiocephalic_trunk", "color": "#EA614B" },
63
+ "55": { "name": "subclavian_artery_right", "color": "#4B6AEA" },
64
+ "56": { "name": "subclavian_artery_left", "color": "#4BEA84" },
65
+ "57": { "name": "common_carotid_artery_right", "color": "#EA4BB4" },
66
+ "58": { "name": "common_carotid_artery_left", "color": "#E1EA4B" },
67
+ "59": { "name": "brachiocephalic_vein_left", "color": "#C64BEA" },
68
+ "60": { "name": "brachiocephalic_vein_right", "color": "#4BEA88" },
69
+ "61": { "name": "atrial_appendage_left", "color": "#EA5B4B" },
70
+ "62": { "name": "superior_vena_cava", "color": "#4B71EA" },
71
+ "63": { "name": "inferior_vena_cava", "color": "#4BEA8B" },
72
+ "64": { "name": "portal_vein_and_splenic_vein", "color": "#EA4BBA" },
73
+ "65": { "name": "iliac_artery_left", "color": "#E8EA4B" },
74
+ "66": { "name": "iliac_artery_right", "color": "#BF4BEA" },
75
+ "67": { "name": "iliac_vena_left", "color": "#4BEA82" },
76
+ "68": { "name": "iliac_vena_right", "color": "#EA544B" },
77
+ "69": { "name": "humerus_left", "color": "#4B78EA" },
78
+ "70": { "name": "humerus_right", "color": "#4BEA92" },
79
+ "71": { "name": "scapula_left", "color": "#EA4BC1" },
80
+ "72": { "name": "scapula_right", "color": "#EAEA4B" },
81
+ "73": { "name": "clavicula_left", "color": "#B84BEA" },
82
+ "74": { "name": "clavicula_right", "color": "#4BEA79" },
83
+ "75": { "name": "femur_left", "color": "#EA4D4B" },
84
+ "76": { "name": "femur_right", "color": "#4B7FEA" },
85
+ "77": { "name": "hip_left", "color": "#4BEA99" },
86
+ "78": { "name": "hip_right", "color": "#EA4BC8" },
87
+ "79": { "name": "spinal_cord", "color": "#EAEC4B" },
88
+ "80": { "name": "gluteus_maximus_left", "color": "#B14BEA" },
89
+ "81": { "name": "gluteus_maximus_right", "color": "#4BEA72" },
90
+ "82": { "name": "gluteus_medius_left", "color": "#EA4B54" },
91
+ "83": { "name": "gluteus_medius_right", "color": "#4B86EA" },
92
+ "84": { "name": "gluteus_minimus_left", "color": "#4BEAA0" },
93
+ "85": { "name": "gluteus_minimus_right", "color": "#EA4BCF" },
94
+ "86": { "name": "autochthon_left", "color": "#EA F34B".replace(" ", "") },
95
+ "87": { "name": "autochthon_right", "color": "#AA4BEA" },
96
+ "88": { "name": "iliopsoas_left", "color": "#4BEA6B" },
97
+ "89": { "name": "iliopsoas_right", "color": "#EA4B5B" },
98
+ "90": { "name": "brain", "color": "#4B8DEA" },
99
+ "91": { "name": "skull", "color": "#4BEAA7" },
100
+ "92": { "name": "rib_left_1", "color": "#EA4BD6" },
101
+ "93": { "name": "rib_left_2", "color": "#EAFC4B" },
102
+ "94": { "name": "rib_left_3", "color": "#A34BEA" },
103
+ "95": { "name": "rib_left_4", "color": "#4BEA64" },
104
+ "96": { "name": "rib_left_5", "color": "#EA4B62" },
105
+ "97": { "name": "rib_left_6", "color": "#4B94EA" },
106
+ "98": { "name": "rib_left_7", "color": "#4BEAAE" },
107
+ "99": { "name": "rib_left_8", "color": "#EA4BDD" },
108
+ "100": { "name": "rib_left_9", "color": "#F0EA4B" },
109
+ "101": { "name": "rib_left_10", "color": "#9C4BEA" },
110
+ "102": { "name": "rib_left_11", "color": "#4BEA5D" },
111
+ "103": { "name": "rib_left_12", "color": "#EA4B69" },
112
+ "104": { "name": "rib_right_1", "color": "#4B9BEA" },
113
+ "105": { "name": "rib_right_2", "color": "#4BEAB5" },
114
+ "106": { "name": "rib_right_3", "color": "#EA4BE4" },
115
+ "107": { "name": "rib_right_4", "color": "#E9EA4B" },
116
+ "108": { "name": "rib_right_5", "color": "#954BEA" },
117
+ "109": { "name": "rib_right_6", "color": "#4BEA56" },
118
+ "110": { "name": "rib_right_7", "color": "#EA4B70" },
119
+ "111": { "name": "rib_right_8", "color": "#4BA2EA" },
120
+ "112": { "name": "rib_right_9", "color": "#4BEABC" },
121
+ "113": { "name": "rib_right_10", "color": "#EA4BEB" },
122
+ "114": { "name": "rib_right_11", "color": "#E2EA4B" },
123
+ "115": { "name": "rib_right_12", "color": "#8E4BEA" },
124
+ "116": { "name": "sternum", "color": "#4BEA4F" },
125
+ "117": { "name": "costal_cartilages", "color": "#61EA4B" }
126
  }
127
  }