Update total/app.json
Browse files- total/app.json +118 -117
total/app.json
CHANGED
|
@@ -4,123 +4,124 @@
|
|
| 4 |
"description": "<b>Description:</b><br>This model is an optimized adaptation of the original <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator</a> for the <b>KonfAI</b> deep learning framework.<br><br><b>Capabilities:</b><br>• Segmentation of <b>118 anatomical classes</b> covering organs, bones, muscles, and vessels<br>• Enhanced runtime and memory efficiency vs. the original nnU-Net implementation<br>• High-resolution input: <b>1.5 mm isotropic</b><br><br><b>Training data:</b><br>Trained on a diverse dataset of <b>1204 whole-body CT examinations</b> including different scanners, acquisition settings, contrast phases, and major pathologies (27 organs, 59 bones, 10 muscles, 8 vessels), with manual expert-reviewed annotations<br><br><b>How to cite:</b><br><cite>J. Wasserthal et al., <i>TotalSegmentator: Robust Segmentation of 104 Anatomical Structures in CT Images</i>, Radiology: AI, 2023.</cite>",
|
| 5 |
"tta": 0,
|
| 6 |
"mc_dropout": 0,
|
|
|
|
| 7 |
"terminology": {
|
| 8 |
-
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
|
| 22 |
-
|
| 23 |
-
|
| 24 |
-
|
| 25 |
-
|
| 26 |
-
|
| 27 |
-
|
| 28 |
-
|
| 29 |
-
|
| 30 |
-
|
| 31 |
-
|
| 32 |
-
|
| 33 |
-
|
| 34 |
-
|
| 35 |
-
|
| 36 |
-
|
| 37 |
-
|
| 38 |
-
|
| 39 |
-
|
| 40 |
-
|
| 41 |
-
|
| 42 |
-
|
| 43 |
-
|
| 44 |
-
|
| 45 |
-
|
| 46 |
-
|
| 47 |
-
|
| 48 |
-
|
| 49 |
-
|
| 50 |
-
|
| 51 |
-
|
| 52 |
-
|
| 53 |
-
|
| 54 |
-
|
| 55 |
-
|
| 56 |
-
|
| 57 |
-
|
| 58 |
-
|
| 59 |
-
|
| 60 |
-
|
| 61 |
-
|
| 62 |
-
|
| 63 |
-
|
| 64 |
-
|
| 65 |
-
|
| 66 |
-
|
| 67 |
-
|
| 68 |
-
|
| 69 |
-
|
| 70 |
-
|
| 71 |
-
|
| 72 |
-
|
| 73 |
-
|
| 74 |
-
|
| 75 |
-
|
| 76 |
-
|
| 77 |
-
|
| 78 |
-
|
| 79 |
-
|
| 80 |
-
|
| 81 |
-
|
| 82 |
-
|
| 83 |
-
|
| 84 |
-
|
| 85 |
-
|
| 86 |
-
|
| 87 |
-
|
| 88 |
-
|
| 89 |
-
|
| 90 |
-
|
| 91 |
-
|
| 92 |
-
|
| 93 |
-
|
| 94 |
-
|
| 95 |
-
|
| 96 |
-
|
| 97 |
-
|
| 98 |
-
|
| 99 |
-
|
| 100 |
-
|
| 101 |
-
|
| 102 |
-
|
| 103 |
-
|
| 104 |
-
|
| 105 |
-
|
| 106 |
-
|
| 107 |
-
|
| 108 |
-
|
| 109 |
-
|
| 110 |
-
|
| 111 |
-
|
| 112 |
-
|
| 113 |
-
|
| 114 |
-
|
| 115 |
-
|
| 116 |
-
|
| 117 |
-
|
| 118 |
-
|
| 119 |
-
|
| 120 |
-
|
| 121 |
-
|
| 122 |
-
|
| 123 |
-
|
| 124 |
-
|
| 125 |
}
|
| 126 |
}
|
|
|
|
| 4 |
"description": "<b>Description:</b><br>This model is an optimized adaptation of the original <a href='https://github.com/wasserth/TotalSegmentator'>TotalSegmentator</a> for the <b>KonfAI</b> deep learning framework.<br><br><b>Capabilities:</b><br>• Segmentation of <b>118 anatomical classes</b> covering organs, bones, muscles, and vessels<br>• Enhanced runtime and memory efficiency vs. the original nnU-Net implementation<br>• High-resolution input: <b>1.5 mm isotropic</b><br><br><b>Training data:</b><br>Trained on a diverse dataset of <b>1204 whole-body CT examinations</b> including different scanners, acquisition settings, contrast phases, and major pathologies (27 organs, 59 bones, 10 muscles, 8 vessels), with manual expert-reviewed annotations<br><br><b>How to cite:</b><br><cite>J. Wasserthal et al., <i>TotalSegmentator: Robust Segmentation of 104 Anatomical Structures in CT Images</i>, Radiology: AI, 2023.</cite>",
|
| 5 |
"tta": 0,
|
| 6 |
"mc_dropout": 0,
|
| 7 |
+
{
|
| 8 |
"terminology": {
|
| 9 |
+
"1": { "name": "spleen", "color": "#4B79EA" },
|
| 10 |
+
"2": { "name": "kidney_right", "color": "#A8EA4B" },
|
| 11 |
+
"3": { "name": "kidney_left", "color": "#EA4BD7" },
|
| 12 |
+
"4": { "name": "gallbladder", "color": "#4BEAC0" },
|
| 13 |
+
"5": { "name": "liver", "color": "#EA924B" },
|
| 14 |
+
"6": { "name": "stomach", "color": "#634BEA" },
|
| 15 |
+
"7": { "name": "pancreas", "color": "#4BEA53" },
|
| 16 |
+
"8": { "name": "adrenal_gland_right", "color": "#EA4B82" },
|
| 17 |
+
"9": { "name": "adrenal_gland_left", "color": "#B0EA4B" },
|
| 18 |
+
"10": { "name": "lung_upper_lobe_left", "color": "#EA4BE0" },
|
| 19 |
+
"11": { "name": "lung_lower_lobe_left", "color": "#4BEAB9" },
|
| 20 |
+
"12": { "name": "lung_upper_lobe_right", "color": "#EA8B4B" },
|
| 21 |
+
"13": { "name": "lung_middle_lobe_right", "color": "#5C4BEA" },
|
| 22 |
+
"14": { "name": "lung_lower_lobe_right", "color": "#4BEA5A" },
|
| 23 |
+
"15": { "name": "esophagus", "color": "#EA4B89" },
|
| 24 |
+
"16": { "name": "trachea", "color": "#B7EA4B" },
|
| 25 |
+
"17": { "name": "thyroid_gland", "color": "#EA4BE8" },
|
| 26 |
+
"18": { "name": "small_bowel", "color": "#4BEAB2" },
|
| 27 |
+
"19": { "name": "duodenum", "color": "#EA844B" },
|
| 28 |
+
"20": { "name": "colon", "color": "#554BEA" },
|
| 29 |
+
"21": { "name": "urinary_bladder", "color": "#4BEA61" },
|
| 30 |
+
"22": { "name": "prostate", "color": "#EA4B90" },
|
| 31 |
+
"23": { "name": "kidney_cyst_left", "color": "#BEEA4B" },
|
| 32 |
+
"24": { "name": "kidney_cyst_right", "color": "#E94BEA" },
|
| 33 |
+
"25": { "name": "sacrum", "color": "#4BEAAB" },
|
| 34 |
+
"26": { "name": "vertebrae_S1", "color": "#EA7D4B" },
|
| 35 |
+
"27": { "name": "vertebrae_L5", "color": "#4E4BEA" },
|
| 36 |
+
"28": { "name": "vertebrae_L4", "color": "#4BEA68" },
|
| 37 |
+
"29": { "name": "vertebrae_L3", "color": "#EA4B97" },
|
| 38 |
+
"30": { "name": "vertebrae_L2", "color": "#C5EA4B" },
|
| 39 |
+
"31": { "name": "vertebrae_L1", "color": "#E24BEA" },
|
| 40 |
+
"32": { "name": "vertebrae_T12", "color": "#4BEAA4" },
|
| 41 |
+
"33": { "name": "vertebrae_T11", "color": "#EA764B" },
|
| 42 |
+
"34": { "name": "vertebrae_T10", "color": "#4B55EA" },
|
| 43 |
+
"35": { "name": "vertebrae_T9", "color": "#4BEA6F" },
|
| 44 |
+
"36": { "name": "vertebrae_T8", "color": "#EA4B9F" },
|
| 45 |
+
"37": { "name": "vertebrae_T7", "color": "#CCEA4B" },
|
| 46 |
+
"38": { "name": "vertebrae_T6", "color": "#DB4BEA" },
|
| 47 |
+
"39": { "name": "vertebrae_T5", "color": "#4BEA9D" },
|
| 48 |
+
"40": { "name": "vertebrae_T4", "color": "#EA6F4B" },
|
| 49 |
+
"41": { "name": "vertebrae_T3", "color": "#4B5CEA" },
|
| 50 |
+
"42": { "name": "vertebrae_T2", "color": "#4BEA76" },
|
| 51 |
+
"43": { "name": "vertebrae_T1", "color": "#EA4BA6" },
|
| 52 |
+
"44": { "name": "vertebrae_C7", "color": "#D3EA4B" },
|
| 53 |
+
"45": { "name": "vertebrae_C6", "color": "#D44BEA" },
|
| 54 |
+
"46": { "name": "vertebrae_C5", "color": "#4BEA96" },
|
| 55 |
+
"47": { "name": "vertebrae_C4", "color": "#EA684B" },
|
| 56 |
+
"48": { "name": "vertebrae_C3", "color": "#4B63EA" },
|
| 57 |
+
"49": { "name": "vertebrae_C2", "color": "#4BEA7D" },
|
| 58 |
+
"50": { "name": "vertebrae_C1", "color": "#EA4BAD" },
|
| 59 |
+
"51": { "name": "heart", "color": "#DAEA4B" },
|
| 60 |
+
"52": { "name": "aorta", "color": "#CD4BEA" },
|
| 61 |
+
"53": { "name": "pulmonary_vein", "color": "#4BEA8F" },
|
| 62 |
+
"54": { "name": "brachiocephalic_trunk", "color": "#EA614B" },
|
| 63 |
+
"55": { "name": "subclavian_artery_right", "color": "#4B6AEA" },
|
| 64 |
+
"56": { "name": "subclavian_artery_left", "color": "#4BEA84" },
|
| 65 |
+
"57": { "name": "common_carotid_artery_right", "color": "#EA4BB4" },
|
| 66 |
+
"58": { "name": "common_carotid_artery_left", "color": "#E1EA4B" },
|
| 67 |
+
"59": { "name": "brachiocephalic_vein_left", "color": "#C64BEA" },
|
| 68 |
+
"60": { "name": "brachiocephalic_vein_right", "color": "#4BEA88" },
|
| 69 |
+
"61": { "name": "atrial_appendage_left", "color": "#EA5B4B" },
|
| 70 |
+
"62": { "name": "superior_vena_cava", "color": "#4B71EA" },
|
| 71 |
+
"63": { "name": "inferior_vena_cava", "color": "#4BEA8B" },
|
| 72 |
+
"64": { "name": "portal_vein_and_splenic_vein", "color": "#EA4BBA" },
|
| 73 |
+
"65": { "name": "iliac_artery_left", "color": "#E8EA4B" },
|
| 74 |
+
"66": { "name": "iliac_artery_right", "color": "#BF4BEA" },
|
| 75 |
+
"67": { "name": "iliac_vena_left", "color": "#4BEA82" },
|
| 76 |
+
"68": { "name": "iliac_vena_right", "color": "#EA544B" },
|
| 77 |
+
"69": { "name": "humerus_left", "color": "#4B78EA" },
|
| 78 |
+
"70": { "name": "humerus_right", "color": "#4BEA92" },
|
| 79 |
+
"71": { "name": "scapula_left", "color": "#EA4BC1" },
|
| 80 |
+
"72": { "name": "scapula_right", "color": "#EAEA4B" },
|
| 81 |
+
"73": { "name": "clavicula_left", "color": "#B84BEA" },
|
| 82 |
+
"74": { "name": "clavicula_right", "color": "#4BEA79" },
|
| 83 |
+
"75": { "name": "femur_left", "color": "#EA4D4B" },
|
| 84 |
+
"76": { "name": "femur_right", "color": "#4B7FEA" },
|
| 85 |
+
"77": { "name": "hip_left", "color": "#4BEA99" },
|
| 86 |
+
"78": { "name": "hip_right", "color": "#EA4BC8" },
|
| 87 |
+
"79": { "name": "spinal_cord", "color": "#EAEC4B" },
|
| 88 |
+
"80": { "name": "gluteus_maximus_left", "color": "#B14BEA" },
|
| 89 |
+
"81": { "name": "gluteus_maximus_right", "color": "#4BEA72" },
|
| 90 |
+
"82": { "name": "gluteus_medius_left", "color": "#EA4B54" },
|
| 91 |
+
"83": { "name": "gluteus_medius_right", "color": "#4B86EA" },
|
| 92 |
+
"84": { "name": "gluteus_minimus_left", "color": "#4BEAA0" },
|
| 93 |
+
"85": { "name": "gluteus_minimus_right", "color": "#EA4BCF" },
|
| 94 |
+
"86": { "name": "autochthon_left", "color": "#EA F34B".replace(" ", "") },
|
| 95 |
+
"87": { "name": "autochthon_right", "color": "#AA4BEA" },
|
| 96 |
+
"88": { "name": "iliopsoas_left", "color": "#4BEA6B" },
|
| 97 |
+
"89": { "name": "iliopsoas_right", "color": "#EA4B5B" },
|
| 98 |
+
"90": { "name": "brain", "color": "#4B8DEA" },
|
| 99 |
+
"91": { "name": "skull", "color": "#4BEAA7" },
|
| 100 |
+
"92": { "name": "rib_left_1", "color": "#EA4BD6" },
|
| 101 |
+
"93": { "name": "rib_left_2", "color": "#EAFC4B" },
|
| 102 |
+
"94": { "name": "rib_left_3", "color": "#A34BEA" },
|
| 103 |
+
"95": { "name": "rib_left_4", "color": "#4BEA64" },
|
| 104 |
+
"96": { "name": "rib_left_5", "color": "#EA4B62" },
|
| 105 |
+
"97": { "name": "rib_left_6", "color": "#4B94EA" },
|
| 106 |
+
"98": { "name": "rib_left_7", "color": "#4BEAAE" },
|
| 107 |
+
"99": { "name": "rib_left_8", "color": "#EA4BDD" },
|
| 108 |
+
"100": { "name": "rib_left_9", "color": "#F0EA4B" },
|
| 109 |
+
"101": { "name": "rib_left_10", "color": "#9C4BEA" },
|
| 110 |
+
"102": { "name": "rib_left_11", "color": "#4BEA5D" },
|
| 111 |
+
"103": { "name": "rib_left_12", "color": "#EA4B69" },
|
| 112 |
+
"104": { "name": "rib_right_1", "color": "#4B9BEA" },
|
| 113 |
+
"105": { "name": "rib_right_2", "color": "#4BEAB5" },
|
| 114 |
+
"106": { "name": "rib_right_3", "color": "#EA4BE4" },
|
| 115 |
+
"107": { "name": "rib_right_4", "color": "#E9EA4B" },
|
| 116 |
+
"108": { "name": "rib_right_5", "color": "#954BEA" },
|
| 117 |
+
"109": { "name": "rib_right_6", "color": "#4BEA56" },
|
| 118 |
+
"110": { "name": "rib_right_7", "color": "#EA4B70" },
|
| 119 |
+
"111": { "name": "rib_right_8", "color": "#4BA2EA" },
|
| 120 |
+
"112": { "name": "rib_right_9", "color": "#4BEABC" },
|
| 121 |
+
"113": { "name": "rib_right_10", "color": "#EA4BEB" },
|
| 122 |
+
"114": { "name": "rib_right_11", "color": "#E2EA4B" },
|
| 123 |
+
"115": { "name": "rib_right_12", "color": "#8E4BEA" },
|
| 124 |
+
"116": { "name": "sternum", "color": "#4BEA4F" },
|
| 125 |
+
"117": { "name": "costal_cartilages", "color": "#61EA4B" }
|
| 126 |
}
|
| 127 |
}
|