Upload 19 files
Browse files- .cache/huggingface/.gitignore +1 -0
- .cache/huggingface/download/.gitattributes.metadata +3 -0
- .cache/huggingface/download/README.md.metadata +3 -0
- .cache/huggingface/download/config.json.metadata +3 -0
- .cache/huggingface/download/model.safetensors.metadata +3 -0
- .cache/huggingface/download/pytorch_model.bin.metadata +3 -0
- .cache/huggingface/download/special_tokens_map.json.metadata +3 -0
- .cache/huggingface/download/tf_model.h5.metadata +3 -0
- .cache/huggingface/download/tokenizer_config.json.metadata +3 -0
- .cache/huggingface/download/vocab.txt.metadata +3 -0
- .gitattributes +1 -3
- README.md +20 -0
- config.json +29 -0
- model.safetensors +3 -0
- pytorch_model.bin +3 -0
- special_tokens_map.json +7 -0
- tf_model.h5 +3 -0
- tokenizer_config.json +4 -0
- vocab.txt +33 -0
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README.md
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---
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license: mit
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widget:
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- text: "MQIFVKTLTGKTITLEVEPS<mask>TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG"
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---
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## ESM-2
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ESM-2 is a state-of-the-art protein model trained on a masked language modelling objective. It is suitable for fine-tuning on a wide range of tasks that take protein sequences as input. For detailed information on the model architecture and training data, please refer to the [accompanying paper](https://www.biorxiv.org/content/10.1101/2022.07.20.500902v2). You may also be interested in some demo notebooks ([PyTorch](https://colab.research.google.com/github/huggingface/notebooks/blob/main/examples/protein_language_modeling.ipynb), [TensorFlow](https://colab.research.google.com/github/huggingface/notebooks/blob/main/examples/protein_language_modeling-tf.ipynb)) which demonstrate how to fine-tune ESM-2 models on your tasks of interest.
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Several ESM-2 checkpoints are available in the Hub with varying sizes. Larger sizes generally have somewhat better accuracy, but require much more memory and time to train:
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| Checkpoint name | Num layers | Num parameters |
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|------------------------------|----|----------|
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| [esm2_t48_15B_UR50D](https://huggingface.co/facebook/esm2_t48_15B_UR50D) | 48 | 15B |
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| [esm2_t36_3B_UR50D](https://huggingface.co/facebook/esm2_t36_3B_UR50D) | 36 | 3B |
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| [esm2_t33_650M_UR50D](https://huggingface.co/facebook/esm2_t33_650M_UR50D) | 33 | 650M |
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| [esm2_t30_150M_UR50D](https://huggingface.co/facebook/esm2_t30_150M_UR50D) | 30 | 150M |
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| [esm2_t12_35M_UR50D](https://huggingface.co/facebook/esm2_t12_35M_UR50D) | 12 | 35M |
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| [esm2_t6_8M_UR50D](https://huggingface.co/facebook/esm2_t6_8M_UR50D) | 6 | 8M |
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config.json
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{
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"architectures": [
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"EsmForMaskedLM"
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],
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"attention_probs_dropout_prob": 0.0,
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"classifier_dropout": null,
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"emb_layer_norm_before": false,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.0,
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"hidden_size": 1280,
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"initializer_range": 0.02,
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"intermediate_size": 5120,
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"is_folding_model": false,
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"layer_norm_eps": 1e-05,
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"mask_token_id": 32,
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"max_position_embeddings": 1026,
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"model_type": "esm",
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"num_attention_heads": 20,
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"num_hidden_layers": 33,
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"pad_token_id": 1,
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"position_embedding_type": "rotary",
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"token_dropout": true,
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"torch_dtype": "float32",
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"transformers_version": "4.25.0.dev0",
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"use_cache": true,
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"vocab_list": null,
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"vocab_size": 33
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}
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version https://git-lfs.github.com/spec/v1
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oid sha256:a08adabb949fa67ad3c14b509d04fd60368b35007b0095e3358f81200c4f4db0
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size 2609506392
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pytorch_model.bin
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version https://git-lfs.github.com/spec/v1
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special_tokens_map.json
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tokenizer_config.json
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{
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"model_max_length": 1000000000000000019884624838656,
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"tokenizer_class": "EsmTokenizer"
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vocab.txt
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<cls>
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<mask>
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