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# ruff: noqa: F401
import warnings
from pathlib import Path
warnings.filterwarnings("ignore", message=".*The 'nopython' keyword.*") # noqa # isort:skip
GENE_MEDIAN_FILE = Path(__file__).parent / "gene_median_dictionary_gc104M.pkl"
TOKEN_DICTIONARY_FILE = Path(__file__).parent / "token_dictionary_gc104M.pkl"
ENSEMBL_DICTIONARY_FILE = Path(__file__).parent / "gene_name_id_dict_gc104M.pkl"
ENSEMBL_MAPPING_FILE = Path(__file__).parent / "ensembl_mapping_dict_gc104M.pkl"
GENE_MEDIAN_FILE_30M = Path(__file__).parent / "gene_dictionaries_30m/gene_median_dictionary_gc30M.pkl"
TOKEN_DICTIONARY_FILE_30M = Path(__file__).parent / "gene_dictionaries_30m/token_dictionary_gc30M.pkl"
ENSEMBL_DICTIONARY_FILE_30M = Path(__file__).parent / "gene_dictionaries_30m/gene_name_id_dict_gc30M.pkl"
ENSEMBL_MAPPING_FILE_30M = Path(__file__).parent / "gene_dictionaries_30m/ensembl_mapping_dict_gc30M.pkl"
from . import (
collator_for_classification,
emb_extractor,
in_silico_perturber,
in_silico_perturber_stats,
pretrainer,
tokenizer,
)
from .collator_for_classification import (
DataCollatorForCellClassification,
DataCollatorForGeneClassification,
)
from .emb_extractor import EmbExtractor, get_embs
from .in_silico_perturber import InSilicoPerturber
from .in_silico_perturber_stats import InSilicoPerturberStats
from .pretrainer import GeneformerPretrainer
from .tokenizer import TranscriptomeTokenizer
from . import classifier # noqa # isort:skip
from .classifier import Classifier # noqa # isort:skip
from . import mtl_classifier # noqa # isort:skip
from .mtl_classifier import MTLClassifier # noqa # isort:skip
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