Training in progress, epoch 1
Browse files- .gitignore +1 -0
- added_tokens.json +179 -0
- config.json +35 -0
- pytorch_model.bin +3 -0
- runs/Jul01_14-00-48_2610360c99c0/events.out.tfevents.1688220053.2610360c99c0.844.0 +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +0 -0
- tokenizer_config.json +16 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
.gitignore
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
checkpoint-*/
|
added_tokens.json
ADDED
|
@@ -0,0 +1,179 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"ACL": 29023,
|
| 3 |
+
"ADH": 29011,
|
| 4 |
+
"ADHD": 29057,
|
| 5 |
+
"ADR": 29075,
|
| 6 |
+
"AFR": 29013,
|
| 7 |
+
"AKA": 29148,
|
| 8 |
+
"ANED": 29134,
|
| 9 |
+
"ARDS": 29153,
|
| 10 |
+
"ARF": 29084,
|
| 11 |
+
"ASCVD": 29160,
|
| 12 |
+
"Administer": 29018,
|
| 13 |
+
"Allow": 29083,
|
| 14 |
+
"Assess": 29082,
|
| 15 |
+
"BKA": 29133,
|
| 16 |
+
"BMP": 29155,
|
| 17 |
+
"BPD": 29071,
|
| 18 |
+
"BSO": 29122,
|
| 19 |
+
"C&S": 29062,
|
| 20 |
+
"CABG": 29136,
|
| 21 |
+
"CDE": 29036,
|
| 22 |
+
"COPD": 29142,
|
| 23 |
+
"CPAP": 29128,
|
| 24 |
+
"CVA": 29131,
|
| 25 |
+
"Conduct": 29068,
|
| 26 |
+
"Confirm": 29154,
|
| 27 |
+
"D&C": 29106,
|
| 28 |
+
"D/C": 29090,
|
| 29 |
+
"DCIS": 29138,
|
| 30 |
+
"DDX": 29033,
|
| 31 |
+
"DJD": 29088,
|
| 32 |
+
"DM": 29040,
|
| 33 |
+
"DNR": 29124,
|
| 34 |
+
"DOE": 29044,
|
| 35 |
+
"DTR": 29051,
|
| 36 |
+
"DVT": 29027,
|
| 37 |
+
"Develop": 29171,
|
| 38 |
+
"Diagnose": 29050,
|
| 39 |
+
"Document": 29008,
|
| 40 |
+
"Drain": 29125,
|
| 41 |
+
"ECG": 29077,
|
| 42 |
+
"ECT": 29021,
|
| 43 |
+
"ETOH": 29054,
|
| 44 |
+
"Elevated": 29055,
|
| 45 |
+
"Evaluate": 29061,
|
| 46 |
+
"Examine": 29116,
|
| 47 |
+
"GOMER": 29167,
|
| 48 |
+
"GvHD": 29098,
|
| 49 |
+
"H&H": 29016,
|
| 50 |
+
"H&P": 29009,
|
| 51 |
+
"HA": 29048,
|
| 52 |
+
"HRT": 28998,
|
| 53 |
+
"I&D": 29060,
|
| 54 |
+
"IBD": 29007,
|
| 55 |
+
"ICD": 29000,
|
| 56 |
+
"ICU": 29102,
|
| 57 |
+
"IM": 29087,
|
| 58 |
+
"IMP": 29003,
|
| 59 |
+
"IPF": 29005,
|
| 60 |
+
"ITU": 29162,
|
| 61 |
+
"IU": 28997,
|
| 62 |
+
"Include": 29025,
|
| 63 |
+
"Infant": 29110,
|
| 64 |
+
"JT": 29105,
|
| 65 |
+
"KCL": 29041,
|
| 66 |
+
"LBP": 29078,
|
| 67 |
+
"LCIS": 29161,
|
| 68 |
+
"LLQ": 29022,
|
| 69 |
+
"LUQ": 29143,
|
| 70 |
+
"M/H": 29158,
|
| 71 |
+
"MCL": 29140,
|
| 72 |
+
"Manage": 29169,
|
| 73 |
+
"N/V": 29004,
|
| 74 |
+
"NBCCS": 29101,
|
| 75 |
+
"NCP": 29043,
|
| 76 |
+
"NPO": 29108,
|
| 77 |
+
"NSR": 29002,
|
| 78 |
+
"O&P": 29073,
|
| 79 |
+
"OD": 29164,
|
| 80 |
+
"ORIF": 29020,
|
| 81 |
+
"OS.": 29100,
|
| 82 |
+
"OU.": 29014,
|
| 83 |
+
"Obtain": 29092,
|
| 84 |
+
"PCL": 29056,
|
| 85 |
+
"PE": 29104,
|
| 86 |
+
"PERRLA": 29091,
|
| 87 |
+
"PFT": 29109,
|
| 88 |
+
"PMI": 29130,
|
| 89 |
+
"PMS": 29080,
|
| 90 |
+
"PTH": 29114,
|
| 91 |
+
"PTSD": 29076,
|
| 92 |
+
"PUD": 29159,
|
| 93 |
+
"Patient": 29001,
|
| 94 |
+
"Patient's": 29024,
|
| 95 |
+
"Perform": 29031,
|
| 96 |
+
"Plt": 29150,
|
| 97 |
+
"Prescribe": 29081,
|
| 98 |
+
"Pt": 29115,
|
| 99 |
+
"R/O": 29126,
|
| 100 |
+
"RDS": 29053,
|
| 101 |
+
"REB": 29112,
|
| 102 |
+
"RLQ": 29165,
|
| 103 |
+
"ROS": 29163,
|
| 104 |
+
"RUQ": 29170,
|
| 105 |
+
"Receive": 29038,
|
| 106 |
+
"Refer": 29097,
|
| 107 |
+
"SAD": 29118,
|
| 108 |
+
"SIDS": 29047,
|
| 109 |
+
"SOB": 29079,
|
| 110 |
+
"SQ": 29066,
|
| 111 |
+
"T&A": 29152,
|
| 112 |
+
"TAH": 29123,
|
| 113 |
+
"THR": 29070,
|
| 114 |
+
"TKR": 29113,
|
| 115 |
+
"TMJ": 29026,
|
| 116 |
+
"TSH": 29121,
|
| 117 |
+
"Treat": 29019,
|
| 118 |
+
"UA": 29017,
|
| 119 |
+
"ULN": 29063,
|
| 120 |
+
"URI": 29072,
|
| 121 |
+
"UTI": 29144,
|
| 122 |
+
"Undergo": 29120,
|
| 123 |
+
"VSS": 29096,
|
| 124 |
+
"Wt": 29135,
|
| 125 |
+
"X-R": 29137,
|
| 126 |
+
"X-ray": 29064,
|
| 127 |
+
"XR": 29065,
|
| 128 |
+
"XRT": 29039,
|
| 129 |
+
"a.c.": 29107,
|
| 130 |
+
"a/g": 29172,
|
| 131 |
+
"ad-lib": 29049,
|
| 132 |
+
"antiemetic": 28996,
|
| 133 |
+
"anuric": 29156,
|
| 134 |
+
"appendicitis": 29151,
|
| 135 |
+
"b.i.d.": 29006,
|
| 136 |
+
"bandemia": 29035,
|
| 137 |
+
"bedtime": 29093,
|
| 138 |
+
"bibasilar": 29094,
|
| 139 |
+
"bld": 29086,
|
| 140 |
+
"c/o": 29111,
|
| 141 |
+
"chem": 29028,
|
| 142 |
+
"complains": 29052,
|
| 143 |
+
"diagnose": 29141,
|
| 144 |
+
"diagnoses": 29058,
|
| 145 |
+
"dict": 29168,
|
| 146 |
+
"gtt": 29127,
|
| 147 |
+
"h.s.": 29157,
|
| 148 |
+
"h/o": 29119,
|
| 149 |
+
"hormonal": 28999,
|
| 150 |
+
"hypertension": 29042,
|
| 151 |
+
"imbalance": 29129,
|
| 152 |
+
"imbalances": 29059,
|
| 153 |
+
"implantation": 29045,
|
| 154 |
+
"lytes": 29146,
|
| 155 |
+
"med": 29085,
|
| 156 |
+
"ml": 29030,
|
| 157 |
+
"p.o.": 29032,
|
| 158 |
+
"p.r.n.": 29010,
|
| 159 |
+
"patient's": 29132,
|
| 160 |
+
"p¯": 29145,
|
| 161 |
+
"q.d.": 29103,
|
| 162 |
+
"q.i.d.": 29117,
|
| 163 |
+
"q2h": 29015,
|
| 164 |
+
"q3h": 29147,
|
| 165 |
+
"qAM": 29099,
|
| 166 |
+
"qPM": 29037,
|
| 167 |
+
"qhs": 29012,
|
| 168 |
+
"qod": 29046,
|
| 169 |
+
"s/p": 29034,
|
| 170 |
+
"t.i.d.": 29067,
|
| 171 |
+
"tab": 29095,
|
| 172 |
+
"tenderness": 29139,
|
| 173 |
+
"thyroid": 29089,
|
| 174 |
+
"u/a": 29069,
|
| 175 |
+
"urinary": 29149,
|
| 176 |
+
"ut": 29166,
|
| 177 |
+
"vitro": 29029,
|
| 178 |
+
"vivo": 29074
|
| 179 |
+
}
|
config.json
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_name_or_path": "dslim/bert-base-NER",
|
| 3 |
+
"_num_labels": 9,
|
| 4 |
+
"architectures": [
|
| 5 |
+
"BertForTokenClassification"
|
| 6 |
+
],
|
| 7 |
+
"attention_probs_dropout_prob": 0.1,
|
| 8 |
+
"classifier_dropout": null,
|
| 9 |
+
"hidden_act": "gelu",
|
| 10 |
+
"hidden_dropout_prob": 0.1,
|
| 11 |
+
"hidden_size": 768,
|
| 12 |
+
"id2label": {
|
| 13 |
+
"0": "O",
|
| 14 |
+
"1": "ABV"
|
| 15 |
+
},
|
| 16 |
+
"initializer_range": 0.02,
|
| 17 |
+
"intermediate_size": 3072,
|
| 18 |
+
"label2id": {
|
| 19 |
+
"ABV": 1,
|
| 20 |
+
"O": 0
|
| 21 |
+
},
|
| 22 |
+
"layer_norm_eps": 1e-12,
|
| 23 |
+
"max_position_embeddings": 512,
|
| 24 |
+
"model_type": "bert",
|
| 25 |
+
"num_attention_heads": 12,
|
| 26 |
+
"num_hidden_layers": 12,
|
| 27 |
+
"output_past": true,
|
| 28 |
+
"pad_token_id": 0,
|
| 29 |
+
"position_embedding_type": "absolute",
|
| 30 |
+
"torch_dtype": "float32",
|
| 31 |
+
"transformers_version": "4.30.2",
|
| 32 |
+
"type_vocab_size": 2,
|
| 33 |
+
"use_cache": true,
|
| 34 |
+
"vocab_size": 29173
|
| 35 |
+
}
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:05951d924452a5cd0ff3c0b2f82584e140714b23440d03caefb0babca9c3d254
|
| 3 |
+
size 431497965
|
runs/Jul01_14-00-48_2610360c99c0/events.out.tfevents.1688220053.2610360c99c0.844.0
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:62173d6c58e73cd8af341077a328a43e170ca1a193ec0c7dc045d3f46cd3578b
|
| 3 |
+
size 4589
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"mask_token": "[MASK]",
|
| 4 |
+
"pad_token": "[PAD]",
|
| 5 |
+
"sep_token": "[SEP]",
|
| 6 |
+
"unk_token": "[UNK]"
|
| 7 |
+
}
|
tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"clean_up_tokenization_spaces": true,
|
| 3 |
+
"cls_token": "[CLS]",
|
| 4 |
+
"do_basic_tokenize": true,
|
| 5 |
+
"do_lower_case": false,
|
| 6 |
+
"mask_token": "[MASK]",
|
| 7 |
+
"max_len": 512,
|
| 8 |
+
"model_max_length": 512,
|
| 9 |
+
"never_split": null,
|
| 10 |
+
"pad_token": "[PAD]",
|
| 11 |
+
"sep_token": "[SEP]",
|
| 12 |
+
"strip_accents": null,
|
| 13 |
+
"tokenize_chinese_chars": true,
|
| 14 |
+
"tokenizer_class": "BertTokenizer",
|
| 15 |
+
"unk_token": "[UNK]"
|
| 16 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8492611b1420bf9bd32f50d16fc777e05bbbba387b320a99a98a9d0d4ba904b0
|
| 3 |
+
size 3963
|
vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|