Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,96 @@
|
|
| 1 |
-
---
|
| 2 |
-
|
| 3 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
library_name: pytorch
|
| 3 |
+
tags:
|
| 4 |
+
- computer-vision
|
| 5 |
+
- object-detection
|
| 6 |
+
- image-classification
|
| 7 |
+
- yolov7
|
| 8 |
+
- marine-biology
|
| 9 |
+
pipeline_tag: object-detection
|
| 10 |
+
model-index:
|
| 11 |
+
- name: YOLOv7 Baselines on N-MARINE
|
| 12 |
+
results:
|
| 13 |
+
- task:
|
| 14 |
+
type: object-detection
|
| 15 |
+
name: Object Detection
|
| 16 |
+
dataset:
|
| 17 |
+
type: other
|
| 18 |
+
name: N-MARINE
|
| 19 |
+
url: https://open.canada.ca/data/en/dataset/2ae46860-f82a-4127-bb1f-b02e36ef6a70
|
| 20 |
+
split: test
|
| 21 |
+
citation: |
|
| 22 |
+
Morris, C. J., Ayyagari, K. D., Porter, D., Nguyen, Q. K., Hanlon, J., & Whidden, C. (2025).
|
| 23 |
+
*Newfoundland Marine Refuge Fish Classification Dataset (N-Marine)*.
|
| 24 |
+
Government of Canada Open Data Portal.
|
| 25 |
+
https://open.canada.ca/data/en/dataset/2ae46860-f82a-4127-bb1f-b02e36ef6a70
|
| 26 |
+
metrics:
|
| 27 |
+
- name: "mAP@0.5"
|
| 28 |
+
type: mAP
|
| 29 |
+
value: 0.808
|
| 30 |
+
- name: "mAP@0.5:0.95"
|
| 31 |
+
type: mAP
|
| 32 |
+
value: 0.494
|
| 33 |
+
- name: precision
|
| 34 |
+
type: precision
|
| 35 |
+
value: 0.807
|
| 36 |
+
- name: recall
|
| 37 |
+
type: recall
|
| 38 |
+
value: 0.764
|
| 39 |
+
---
|
| 40 |
+
|
| 41 |
+
# YOLOv7 Baselines for N-MARINE
|
| 42 |
+
This repo hosts baseline **YOLOv7** models trained on the **N-MARINE** dataset (North Atlantic underwater images with 9 fish species + background).
|
| 43 |
+
|
| 44 |
+
- **Best baseline (no class weights)**
|
| 45 |
+
mAP@0.5 **0.808 ± 0.007** · mAP@[0.5:0.95] **0.494 ± 0.008** · P **0.807 ± 0.036** · R **0.764 ± 0.014**
|
| 46 |
+
- **Paper:** TODO – add link when available
|
| 47 |
+
|
| 48 |
+
> Dataset: [`WhiddenLab/N-MARINE`](https://huggingface.co/datasets/WhiddenLab/N-MARINE)
|
| 49 |
+
> Supplementary + scripts: https://github.com/Pentaerythrittetranitrat/N-MARINE_dataset_supplementary
|
| 50 |
+
|
| 51 |
+
## Model list
|
| 52 |
+
|
| 53 |
+
- `yolov7-nmarine-no-class-weights.pt` — best overall (recommended)
|
| 54 |
+
- `yolov7-nmarine-class-weights.pt` — improves some rare classes but slightly reduces overall mAP
|
| 55 |
+
|
| 56 |
+
Each model outputs **9 classes** (species IDs in `metadata/classes.csv` within the dataset/supplementary repo).
|
| 57 |
+
|
| 58 |
+
## Intended use
|
| 59 |
+
|
| 60 |
+
- Benchmarking object detection on North Atlantic underwater imagery
|
| 61 |
+
- Studying class imbalance, visibility limits (turbidity/occlusion), and domain shifts
|
| 62 |
+
- Generating crops for downstream **species classification** tasks
|
| 63 |
+
|
| 64 |
+
## Training data and splits
|
| 65 |
+
|
| 66 |
+
- **Data:** N-MARINE (23,936 images, 9 species + background)
|
| 67 |
+
- **Split protocol:** fixed **15% video-level** test; 5-fold CV within train videos
|
| 68 |
+
- **Pretraining:** COCO weights (YOLOv7)
|
| 69 |
+
- **Image size:** 640×640 letterboxed
|
| 70 |
+
- **Epochs:** 50
|
| 71 |
+
- **Batch size:** 32
|
| 72 |
+
- **Other:** default YOLOv7 augmentations & hyperparams unless noted
|
| 73 |
+
|
| 74 |
+
### Class weights variant
|
| 75 |
+
Inverse-frequency class weights slightly improved **Spinytail Skate** but reduced aggregate mAP.
|
| 76 |
+
|
| 77 |
+
## Quick inference
|
| 78 |
+
|
| 79 |
+
> These weights are YOLOv7-format PyTorch checkpoints. Use the YOLOv7 repository or a compatible runner.
|
| 80 |
+
|
| 81 |
+
### CLI (YOLOv7)
|
| 82 |
+
|
| 83 |
+
```bash
|
| 84 |
+
# 1) Clone YOLOv7 (example URL; use the official repo you trained with)
|
| 85 |
+
git clone https://github.com/WongKinYiu/yolov7.git
|
| 86 |
+
cd yolov7
|
| 87 |
+
pip install -r requirements.txt
|
| 88 |
+
|
| 89 |
+
# 2) Run inference
|
| 90 |
+
python detect.py \
|
| 91 |
+
--weights /path/to/yolov7-nmarine-no-class-weights.pt \
|
| 92 |
+
--source /path/to/images_or_video \
|
| 93 |
+
--img-size 640 \
|
| 94 |
+
--conf-thres 0.25 \
|
| 95 |
+
--iou-thres 0.65 \
|
| 96 |
+
--save-txt --save-conf
|