*.7z filter=lfs diff=lfs merge=lfs -text *.arrow filter=lfs diff=lfs merge=lfs -text *.bin filter=lfs diff=lfs merge=lfs -text *.bz2 filter=lfs diff=lfs merge=lfs -text *.ckpt filter=lfs diff=lfs merge=lfs -text *.ftz filter=lfs diff=lfs merge=lfs -text *.gz filter=lfs diff=lfs merge=lfs -text *.h5 filter=lfs diff=lfs merge=lfs -text *.joblib filter=lfs diff=lfs merge=lfs -text *.lfs.* filter=lfs diff=lfs merge=lfs -text *.mlmodel filter=lfs diff=lfs merge=lfs -text *.model filter=lfs diff=lfs merge=lfs -text *.msgpack filter=lfs diff=lfs merge=lfs -text *.npy filter=lfs diff=lfs merge=lfs -text *.npz filter=lfs diff=lfs merge=lfs -text *.onnx filter=lfs diff=lfs merge=lfs -text *.ot filter=lfs diff=lfs merge=lfs -text *.parquet filter=lfs diff=lfs merge=lfs -text *.pb filter=lfs diff=lfs merge=lfs -text *.pickle filter=lfs diff=lfs merge=lfs -text *.pkl filter=lfs diff=lfs merge=lfs -text *.pt filter=lfs diff=lfs merge=lfs -text *.pth filter=lfs diff=lfs merge=lfs -text *.rar filter=lfs diff=lfs merge=lfs -text *.safetensors filter=lfs diff=lfs merge=lfs -text saved_model/**/* filter=lfs diff=lfs merge=lfs -text *.tar.* filter=lfs diff=lfs merge=lfs -text *.tar filter=lfs diff=lfs merge=lfs -text *.tflite filter=lfs diff=lfs merge=lfs -text *.tgz filter=lfs diff=lfs merge=lfs -text *.wasm filter=lfs diff=lfs merge=lfs -text *.xz filter=lfs diff=lfs merge=lfs -text *.zip filter=lfs diff=lfs merge=lfs -text *.zst filter=lfs diff=lfs merge=lfs -text *tfevents* filter=lfs diff=lfs merge=lfs -text efficiency_figure2/checkpoint-388560/trainer_state.json filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/.ipynb_checkpoints/training_seq_score_consistent_from_alignment_zscore_split-checkpoint.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/TILE_mpra.fa filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep1.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep1.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep2.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep2.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep3.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep3.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep4.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/DNA_rep4.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep1.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep1.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep2.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep2.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep3.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep3.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep4.sorted.bam filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/align_bam/RNA_rep4.sorted.bam.bai filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/barcode_level_counts_with_metadata.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/barcode_level_ratios.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/barcode_level_ratios_qc.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/bt2_index/TILE_mpra.1.bt2 filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/bt2_index/TILE_mpra.2.bt2 filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/bt2_index/TILE_mpra.3.bt2 filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/bt2_index/TILE_mpra.4.bt2 filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/bt2_index/TILE_mpra.rev.1.bt2 filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/bt2_index/TILE_mpra.rev.2.bt2 filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint-388560_base/trainer_state.json filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint_44040_best_test_eval/scatter_pred_vs_gt_all_test.png filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint_44040_best_test_eval/scatter_pred_vs_gt_extreme_abs20.png filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint_44040_best_test_eval/scatter_pred_vs_gt_top_or_bottom10.png filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint_eval_ranking_outputs/train_predictions.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint_eval_ranking_outputs/train_predictions_from_rm_api.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/checkpoint_eval_train_valid_outputs/train_predictions.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/element_level_readout_all_qc_barcodes.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/element_level_readout_consistent.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/prompt_generation_metadata.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/qwen_stability_regression_ckpt/stability_fulltrain_aggressive_extreme_weights/effective_training_table_with_runtime_weights.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/qwen_stability_regression_ckpt/stability_fulltrain_minimal_bs2/checkpoint-692778/trainer_state.json filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/qwen_stability_regression_ckpt/stability_fulltrain_minimal_bs2/checkpoint-774972/trainer_state.json filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/qwen_stability_regression_ckpt/stability_fulltrain_minimal_bs2/checkpoint-786714/trainer_state.json filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/training_seq_score_consistent_from_alignment_zscore_split.tsv filter=lfs diff=lfs merge=lfs -text regression_stability_functionalviral/training_seq_score_extreme_weighted.tsv filter=lfs diff=lfs merge=lfs -text ribozymegen-figure7/.ipynb_checkpoints/train-checkpoint.txt filter=lfs diff=lfs merge=lfs -text ribozymegen-figure7/filteredwet/checkpoint-40000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-figure7/full.txt filter=lfs diff=lfs merge=lfs -text ribozymegen-figure7/runs/lm_finetune/checkpoint-375608/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-figure7/runs/lm_finetune/checkpoint-388560/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-figure7/train.txt filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/.ipynb_checkpoints/train-checkpoint.jsonl filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-15000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-20000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-25000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-30000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-35000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-40000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-45000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/3e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/trainlog.csv filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-15000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-20000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-25000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-30000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-35000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-40000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-45000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-50000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-55000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-60000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-65000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-70000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06/tb-grpo-ribozyme-rmXdirective-zscore-add/trainlog.csv filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-15000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-20000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-25000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-30000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-35000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/checkpoint-40000/trainer_state.json filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/runs/5e-06_bk/tb-grpo-ribozyme-rmXdirective-zscore-add/trainlog.csv filter=lfs diff=lfs merge=lfs -text ribozymegen-rl-figure7/train.jsonl filter=lfs diff=lfs merge=lfs -text utrgen/checkpoint-55000-pretrained/trainer_state.json filter=lfs diff=lfs merge=lfs -text utrgen/filteredwet/checkpoint-40000/trainer_state.json filter=lfs diff=lfs merge=lfs -text