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SFT Training Script for Qwen2.5-VL-3B-Instruct on Physics CoT Data.
Aligned with RL-with-Cold-Start 7B reference configuration.
Key changes from previous version:
- Full fine-tuning (no LoRA) for stronger cold-start
- Vision encoder NOT frozen (freeze_aligner=false in reference)
- 3 epochs (not 16) to avoid overfitting
- Higher image resolution (max_pixels=1204224) matching reference
- Larger effective batch size (grad_accum=16)
- DeepSpeed ZeRO-2 for memory efficiency
- Lower learning rate (1e-5) appropriate for full FT
"""
import os
import json
import torch
from PIL import Image
from torch.utils.data import Dataset
from transformers import (
Qwen2_5_VLForConditionalGeneration,
AutoProcessor,
TrainingArguments,
Trainer,
)
# ===== Configuration =====
MODEL_NAME = "/workspace/rl4phyx/models/Qwen2.5-VL-3B-Instruct"
DATA_PATH = "/workspace/rl4phyx/RL4Phyx/SFT/sft_train/coldstart_formatted.jsonl"
OUTPUT_DIR = "/workspace/rl4phyx/RL4Phyx/SFT/checkpoints/sft_qwen25vl_3b_fullft"
# Training hyperparameters (aligned with 7B reference)
NUM_EPOCHS = 3 # Reference uses 3 epochs
LEARNING_RATE = 1e-5 # Full FT uses lower LR than LoRA
PER_DEVICE_BATCH_SIZE = 1 # Small batch for VLM
GRAD_ACCUM_STEPS = 8 # Effective batch = 1 * 8 GPUs * 8 = 64
MAX_LENGTH = 4096 # Max total sequence length
FREEZE_VISION = False # Reference: freeze_aligner=false
class PhysicsCoTDataset(Dataset):
"""Dataset for Qwen2.5-VL SFT with physics CoT."""
def __init__(self, data_path, processor, max_length=4096):
self.processor = processor
self.max_length = max_length
with open(data_path, 'r', encoding='utf-8') as f:
self.records = [json.loads(line) for line in f]
print(f"Loaded {len(self.records)} records from {data_path}")
def __len__(self):
return len(self.records)
def __getitem__(self, idx):
record = self.records[idx]
messages = record['messages']
# Extract image path from user message
user_msg = messages[0]
image_path = None
text_content = ""
for content in user_msg['content']:
if content['type'] == 'image':
image_path = content['image'].replace('file://', '')
elif content['type'] == 'text':
text_content = content['text']
# Extract assistant response
assistant_msg = messages[1]
assistant_text = assistant_msg['content'][0]['text']
# Load image
image = Image.open(image_path).convert('RGB')
# Ensure minimum image size for Qwen2.5-VL vision encoder (factor=28)
# Strategy: scale up proportionally (preserve aspect ratio), then pad with white
MIN_DIM = 56 # Must be >= 28, use 56 for safety (2*factor)
w, h = image.size
if w < MIN_DIM or h < MIN_DIM:
# Scale proportionally so the smaller dimension reaches MIN_DIM
scale = max(MIN_DIM / w, MIN_DIM / h)
new_w = int(w * scale)
new_h = int(h * scale)
image = image.resize((new_w, new_h), Image.LANCZOS)
# Pad with white if any dimension still < MIN_DIM (shouldn't happen, but safety)
if new_w < MIN_DIM or new_h < MIN_DIM:
from PIL import ImageOps
padded = Image.new('RGB', (max(new_w, MIN_DIM), max(new_h, MIN_DIM)), (255, 255, 255))
padded.paste(image, (0, 0))
image = padded
# Build conversation for apply_chat_template
conversation = [
{
"role": "user",
"content": [
{"type": "image", "image": image},
{"type": "text", "text": text_content},
],
},
{
"role": "assistant",
"content": [
{"type": "text", "text": assistant_text},
],
},
]
# Use processor to create inputs
text = self.processor.apply_chat_template(
conversation,
tokenize=False,
add_generation_prompt=False,
)
inputs = self.processor(
text=[text],
images=[image],
padding=False,
truncation=True,
max_length=self.max_length,
return_tensors="pt",
)
# Squeeze batch dimension
input_ids = inputs['input_ids'].squeeze(0)
attention_mask = inputs['attention_mask'].squeeze(0)
# Create labels: mask user tokens (only train on assistant response)
labels = input_ids.clone()
# Find the assistant turn start token and mask everything before it
assistant_token_str = "<|im_start|>assistant\n"
assistant_token_ids = self.processor.tokenizer.encode(
assistant_token_str, add_special_tokens=False
)
input_ids_list = input_ids.tolist()
assistant_start = -1
for i in range(len(input_ids_list) - len(assistant_token_ids) + 1):
if input_ids_list[i:i + len(assistant_token_ids)] == assistant_token_ids:
assistant_start = i + len(assistant_token_ids)
break
if assistant_start > 0:
labels[:assistant_start] = -100 # Mask user prompt
else:
raise ValueError(f"FATAL: assistant start token not found in sample {idx}.")
# Also mask padding
labels[attention_mask == 0] = -100
return {
'input_ids': input_ids,
'attention_mask': attention_mask,
'labels': labels,
'pixel_values': inputs.get('pixel_values', torch.tensor([])).squeeze(0) if 'pixel_values' in inputs else None,
'image_grid_thw': inputs.get('image_grid_thw', torch.tensor([])).squeeze(0) if 'image_grid_thw' in inputs else None,
}
class VLMDataCollator:
"""Custom data collator for variable-length VLM inputs."""
def __init__(self, processor):
self.processor = processor
self.pad_token_id = processor.tokenizer.pad_token_id or processor.tokenizer.eos_token_id
def __call__(self, features):
max_len = max(f['input_ids'].size(0) for f in features)
input_ids = []
attention_mask = []
labels = []
pixel_values = []
image_grid_thw = []
for f in features:
seq_len = f['input_ids'].size(0)
pad_len = max_len - seq_len
input_ids.append(torch.cat([
f['input_ids'],
torch.full((pad_len,), self.pad_token_id, dtype=f['input_ids'].dtype)
]))
attention_mask.append(torch.cat([
f['attention_mask'],
torch.zeros(pad_len, dtype=f['attention_mask'].dtype)
]))
labels.append(torch.cat([
f['labels'],
torch.full((pad_len,), -100, dtype=f['labels'].dtype)
]))
if f.get('pixel_values') is not None:
pixel_values.append(f['pixel_values'])
if f.get('image_grid_thw') is not None:
image_grid_thw.append(f['image_grid_thw'])
batch = {
'input_ids': torch.stack(input_ids),
'attention_mask': torch.stack(attention_mask),
'labels': torch.stack(labels),
}
if pixel_values:
batch['pixel_values'] = torch.cat(pixel_values, dim=0)
if image_grid_thw:
batch['image_grid_thw'] = torch.stack(image_grid_thw)
return batch
def main():
print(f"Loading model: {MODEL_NAME}")
print(f"Data: {DATA_PATH}")
print(f"Output: {OUTPUT_DIR}")
print(f"Full FT (no LoRA), Freeze Vision: {FREEZE_VISION}")
print(f"Epochs: {NUM_EPOCHS}, LR: {LEARNING_RATE}, Batch: {PER_DEVICE_BATCH_SIZE} x {GRAD_ACCUM_STEPS}")
# Load processor (higher resolution matching 7B reference)
processor = AutoProcessor.from_pretrained(
MODEL_NAME,
min_pixels=3136, # 56x56
max_pixels=1204224, # ~1100x1100, matching reference MAX_PIXELS
)
# Load model
model = Qwen2_5_VLForConditionalGeneration.from_pretrained(
MODEL_NAME,
torch_dtype=torch.bfloat16,
attn_implementation="sdpa",
)
# Vision encoder: NOT frozen (matching reference freeze_aligner=false)
if FREEZE_VISION:
for name, param in model.named_parameters():
if 'visual' in name:
param.requires_grad = False
print("Froze vision encoder parameters")
else:
print("Vision encoder is trainable (matching 7B reference)")
# Full fine-tuning: enable input grads for gradient checkpointing
model.enable_input_require_grads()
# Create dataset
dataset = PhysicsCoTDataset(data_path=DATA_PATH, processor=processor, max_length=MAX_LENGTH)
# Training arguments
training_args = TrainingArguments(
output_dir=OUTPUT_DIR,
num_train_epochs=NUM_EPOCHS,
per_device_train_batch_size=PER_DEVICE_BATCH_SIZE,
gradient_accumulation_steps=GRAD_ACCUM_STEPS,
learning_rate=LEARNING_RATE,
lr_scheduler_type="cosine",
warmup_ratio=0.03, # Matching reference
weight_decay=0.01,
bf16=True,
logging_steps=10,
save_strategy="steps",
save_steps=20, # Matching reference
save_total_limit=2, # Matching reference
eval_steps=20, # Matching reference
dataloader_num_workers=4,
gradient_checkpointing=True,
gradient_checkpointing_kwargs={'use_reentrant': False},
remove_unused_columns=False,
report_to="none",
deepspeed="ds_zero2.json", # DeepSpeed ZeRO-2 for full FT
save_only_model=True, # Matching reference
)
# Collator
collator = VLMDataCollator(processor)
# Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=dataset,
data_collator=collator,
)
# Train
print("\n===== Starting SFT Training (Full FT, aligned with 7B reference) =====")
trainer.train()
# Save final model
print("\n===== Saving final model =====")
trainer.save_model(os.path.join(OUTPUT_DIR, "final"))
processor.save_pretrained(os.path.join(OUTPUT_DIR, "final"))
print(f"Final model saved to: {os.path.join(OUTPUT_DIR, 'final')}")
print("\n===== SFT Training Complete =====")
if __name__ == "__main__":
main()
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