File size: 13,592 Bytes
97aa5af | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 | import copy
import time
from dataclasses import dataclass
from pathlib import Path
from typing import Optional, Tuple
import numpy as np
import open3d as o3d
import torch
try:
from easydict import EasyDict as edict # type: ignore
except Exception: # pragma: no cover
class edict(dict):
"""Minimal EasyDict fallback (dot access)."""
def __getattr__(self, k):
try:
return self[k]
except KeyError as e:
raise AttributeError(k) from e
def __setattr__(self, k, v):
self[k] = v
from tools import metrics
from r3pm_net.config_loader import get_method_paths
@dataclass
class _PredatorRunner:
predator_root: Path
config_path: Path
weights_path: Path
device: torch.device
config: edict
model: torch.nn.Module
neighborhood_limits: np.ndarray
input_num_points: int
_RUNNER: Optional[_PredatorRunner] = None
_METHOD_CFG = get_method_paths().get("predator", {})
def _build_kpconv_architecture(num_layers: int) -> list:
# Mirrors the logic used in `master_thesis/OverlapPredator/scripts/demo.py`.
arch = ["simple", "resnetb"]
for _ in range(num_layers - 1):
arch += ["resnetb_strided", "resnetb", "resnetb"]
for _ in range(num_layers - 2):
arch += ["nearest_upsample", "unary"]
arch += ["nearest_upsample", "last_unary"]
return arch
def _get_predator_architecture(cfg_in: edict) -> list:
"""
OverlapPredator defines dataset-specific architectures in `configs/models.py`.
We try to use that (it must match the released checkpoints), and fall back to
the demo-style architecture builder if unavailable.
"""
try:
from configs.models import architectures as arch_dict # type: ignore
dataset_name = getattr(cfg_in, "dataset", None)
if dataset_name in arch_dict:
return arch_dict[dataset_name]
except Exception:
pass
return _build_kpconv_architecture(int(getattr(cfg_in, "num_layers", 3)))
def _resolve_path(predator_root: Path, p: str | Path) -> Path:
p = Path(p)
return p if p.is_absolute() else (predator_root / p)
def _maybe_downsample_xyz(xyz: np.ndarray, max_points: int) -> np.ndarray:
if max_points <= 0 or xyz.shape[0] <= max_points:
return xyz
idx = np.random.permutation(xyz.shape[0])[:max_points]
return xyz[idx]
def _to_o3d_feature(desc: np.ndarray) -> "o3d.pipelines.registration.Feature":
feat = o3d.pipelines.registration.Feature()
feat.data = np.asarray(desc, dtype=np.float32).T # (C, N)
return feat
def _ransac_pose_estimation(
src_xyz: np.ndarray,
tgt_xyz: np.ndarray,
src_desc: np.ndarray,
tgt_desc: np.ndarray,
*,
distance_threshold: float = 0.05,
ransac_n: int = 3,
mutual: bool = False,
) -> np.ndarray:
src_pcd = o3d.geometry.PointCloud(o3d.utility.Vector3dVector(src_xyz))
tgt_pcd = o3d.geometry.PointCloud(o3d.utility.Vector3dVector(tgt_xyz))
src_feat = _to_o3d_feature(src_desc)
tgt_feat = _to_o3d_feature(tgt_desc)
estimation = o3d.pipelines.registration.TransformationEstimationPointToPoint(False)
checkers = [
o3d.pipelines.registration.CorrespondenceCheckerBasedOnEdgeLength(0.9),
o3d.pipelines.registration.CorrespondenceCheckerBasedOnDistance(distance_threshold),
]
criteria = o3d.pipelines.registration.RANSACConvergenceCriteria(50000, 1000)
# Open3D signature varies slightly by version; support both.
try:
result = o3d.pipelines.registration.registration_ransac_based_on_feature_matching(
src_pcd,
tgt_pcd,
src_feat,
tgt_feat,
mutual,
distance_threshold,
estimation,
ransac_n,
checkers,
criteria,
)
except TypeError:
result = o3d.pipelines.registration.registration_ransac_based_on_feature_matching(
source=src_pcd,
target=tgt_pcd,
source_feature=src_feat,
target_feature=tgt_feat,
mutual_filter=mutual,
max_correspondence_distance=distance_threshold,
estimation_method=estimation,
ransac_n=ransac_n,
checkers=checkers,
criteria=criteria,
)
return np.asarray(result.transformation, dtype=np.float64)
def _init_runner(
predator_root: Path,
config_path: Path,
weights_path: Optional[Path],
*,
device: Optional[str | torch.device] = None,
input_num_points: Optional[int] = None,
calibrate_neighborhood_limits: bool = True,
) -> _PredatorRunner:
# Import OverlapPredator modules after adding it to sys.path.
import sys
if str(predator_root) not in sys.path:
sys.path.insert(0, str(predator_root))
from lib.utils import load_config
from datasets.my_dataloader import calibrate_neighbors, collate_fn_descriptor
from models.architectures import KPFCNN
cfg = edict(load_config(str(config_path)))
if device is None:
device_t = torch.device("cuda" if bool(cfg.gpu_mode) and torch.cuda.is_available() else "cpu")
else:
device_t = torch.device(device) if not isinstance(device, torch.device) else device
# Resolve weights path:
ckpt_path = _resolve_path(predator_root, weights_path) if weights_path else _resolve_path(predator_root, cfg.pretrain)
state = torch.load(str(ckpt_path), map_location=device_t)
state_dict = state["state_dict"] if isinstance(state, dict) and "state_dict" in state else state
def _try_build_and_load(cfg_in: edict) -> Optional[torch.nn.Module]:
cfg_in.device = device_t
cfg_in.architecture = _get_predator_architecture(cfg_in)
m = KPFCNN(cfg_in).to(device_t)
m.eval()
try:
m.load_state_dict(state_dict, strict=False)
except RuntimeError:
return None
return m
# First try the config as-is. If it fails (size mismatch), try common reduced widths.
cfg_candidates: list[edict] = []
cfg_candidates.append(cfg)
# Avoid duplicates while exploring smaller widths.
first_fd = int(getattr(cfg, "first_feats_dim", 0) or 0)
for cand in [first_fd // 2, 256, 128, 64]:
if cand and cand != first_fd:
c = edict(dict(cfg))
c.first_feats_dim = int(cand)
cfg_candidates.append(c)
model = None
chosen_cfg = None
for c in cfg_candidates:
m = _try_build_and_load(c)
if m is not None:
model = m
chosen_cfg = c
break
if model is None or chosen_cfg is None:
# Re-raise with a clear message.
raise RuntimeError(
f"Failed to load OverlapPredator weights at '{ckpt_path}'. "
f"Config '{config_path}' seems incompatible with checkpoint tensor shapes."
)
# Decide input sampling count (ModelNet config uses 1024).
if input_num_points is None:
input_num_points = int(getattr(cfg, "num_points", 1024))
if calibrate_neighborhood_limits:
# Calibrate neighbors once using a minimal one-sample dataset.
class _SinglePairDataset:
def __init__(self, config):
self.config = config
def __len__(self):
return 1
def __getitem__(self, _):
# Minimal valid sample to satisfy collate_fn_descriptor.
n = max(64, int(input_num_points))
src = np.random.randn(n, 3).astype(np.float32)
tgt = np.random.randn(n, 3).astype(np.float32)
src_feats = np.ones((n, 1), dtype=np.float32)
tgt_feats = np.ones((n, 1), dtype=np.float32)
rot = np.eye(3, dtype=np.float32)
trans = np.zeros((3, 1), dtype=np.float32)
matching_inds = torch.ones(1, 2).long()
sample = torch.ones(1)
gt = np.eye(4, dtype=np.float32)
return src, tgt, src_feats, tgt_feats, rot, trans, matching_inds, src, tgt, sample, gt
dummy_ds = _SinglePairDataset(chosen_cfg)
neighborhood_limits = calibrate_neighbors(dummy_ds, chosen_cfg, collate_fn=collate_fn_descriptor)
else:
# For tasks like parameter counting, we don't need KPConv neighborhood calibration.
# Pick a conservative default that works for typical KPConv configs.
n_layers = int(getattr(chosen_cfg, "num_layers", 5) or 5)
neighborhood_limits = np.asarray([256] * n_layers, dtype=np.int32)
return _PredatorRunner(
predator_root=predator_root,
config_path=config_path,
weights_path=ckpt_path,
device=device_t,
config=chosen_cfg,
model=model,
neighborhood_limits=neighborhood_limits,
input_num_points=int(input_num_points),
)
def predator_reg_and_eval(
source: "o3d.geometry.PointCloud",
target: "o3d.geometry.PointCloud",
*,
gt_transformation: Optional[np.ndarray] = None,
predator_root: str | Path = _METHOD_CFG.get("root", "/home/ykashefbahrami/master_thesis/OverlapPredator"),
config_path: str | Path = _METHOD_CFG.get("config_path", "/home/ykashefbahrami/master_thesis/OverlapPredator/configs/test/modelnet.yaml"),
weights_path: Optional[str | Path] = _METHOD_CFG.get("weights_path", None),
ransac_n_points: int = 1000,
ransac_distance_threshold: float = 0.05,
ransac_n: int = 3,
sampling: str = "prob",
mutual: bool = False,
device: Optional[str | torch.device] = None,
input_num_points: Optional[int] = 1024,
) -> Tuple["o3d.geometry.PointCloud", tuple]:
"""
Run OverlapPredator on a (source, target) pair and evaluate with the same
metric outputs as the Learning3D harness in this repo.
"""
global _RUNNER
predator_root_p = Path(predator_root).resolve()
config_path_p = Path(config_path).resolve()
weights_path_p = Path(weights_path).resolve() if weights_path is not None else None
if _RUNNER is None:
_RUNNER = _init_runner(
predator_root_p,
config_path_p,
weights_path_p,
device=device,
input_num_points=input_num_points,
)
# Import OverlapPredator collate after sys.path is set by _init_runner.
from datasets.my_dataloader import collate_fn_descriptor
src_xyz = np.asarray(source.points, dtype=np.float32)
tgt_xyz = np.asarray(target.points, dtype=np.float32)
src_xyz = _maybe_downsample_xyz(src_xyz, _RUNNER.input_num_points)
tgt_xyz = _maybe_downsample_xyz(tgt_xyz, _RUNNER.input_num_points)
src_feats = np.ones((src_xyz.shape[0], 1), dtype=np.float32)
tgt_feats = np.ones((tgt_xyz.shape[0], 1), dtype=np.float32)
rot = np.eye(3, dtype=np.float32)
trans = np.zeros((3, 1), dtype=np.float32)
matching_inds = torch.ones(1, 2).long()
sample = torch.ones(1)
gt = np.asarray(gt_transformation, dtype=np.float32) if gt_transformation is not None else np.eye(4, dtype=np.float32)
# Collate into KPConv batch format.
batch = collate_fn_descriptor(
[(src_xyz, tgt_xyz, src_feats, tgt_feats, rot, trans, matching_inds, src_xyz, tgt_xyz, sample, gt)],
config=_RUNNER.config,
neighborhood_limits=_RUNNER.neighborhood_limits,
)
# Move batch tensors to device.
for k, v in list(batch.items()):
if isinstance(v, list):
batch[k] = [t.to(_RUNNER.device) for t in v]
elif torch.is_tensor(v):
batch[k] = v.to(_RUNNER.device)
start = time.time()
with torch.no_grad():
feats, scores_overlap, scores_saliency = _RUNNER.model(batch)
feats = feats.detach().cpu()
scores_overlap = scores_overlap.detach().cpu()
scores_saliency = scores_saliency.detach().cpu()
pcd = batch["points"][0].detach().cpu()
len_src = int(batch["stack_lengths"][0][0].detach().cpu().item())
src_pcd = pcd[:len_src]
tgt_pcd = pcd[len_src:]
src_desc = feats[:len_src].numpy()
tgt_desc = feats[len_src:].numpy()
src_scores = (scores_overlap[:len_src] * scores_saliency[:len_src]).numpy().flatten()
tgt_scores = (scores_overlap[len_src:] * scores_saliency[len_src:]).numpy().flatten()
def _sample_idx(scores: np.ndarray, n: int) -> np.ndarray:
n_all = scores.shape[0]
if n_all <= n:
return np.arange(n_all)
if sampling == "topk":
return np.argsort(-scores)[:n]
if sampling == "random":
return np.random.permutation(n_all)[:n]
# prob
s = float(scores.sum())
if not np.isfinite(s) or s <= 0.0:
return np.random.permutation(n_all)[:n]
probs = scores / s
return np.random.choice(np.arange(n_all), size=n, replace=False, p=probs)
src_idx = _sample_idx(src_scores, ransac_n_points)
tgt_idx = _sample_idx(tgt_scores, ransac_n_points)
tsfm = _ransac_pose_estimation(
src_pcd[src_idx].numpy(),
tgt_pcd[tgt_idx].numpy(),
src_desc[src_idx],
tgt_desc[tgt_idx],
distance_threshold=ransac_distance_threshold,
ransac_n=ransac_n,
mutual=mutual,
)
end = time.time()
pc_result = copy.deepcopy(source).transform(tsfm)
eval_results = metrics.all_evaluations(
source,
target,
pc_result,
end - start,
gt_transformation=gt_transformation,
est_transformation=tsfm,
corres=None,
)
return pc_result, eval_results
|