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import torch |
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import os |
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from enum import Enum |
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from tqdm import tqdm |
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import numpy as np |
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from detectron2.structures import BitMasks |
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from psalm.constants import IGNORE_INDEX, IMAGE_TOKEN_INDEX, DEFAULT_IMAGE_TOKEN, DEFAULT_IM_START_TOKEN, \ |
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DEFAULT_IM_END_TOKEN, DEFAULT_SEG_TOKEN, SEG_TOKEN_INDEX |
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from psalm.model.builder import load_pretrained_model |
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from psalm.utils import disable_torch_init |
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from psalm.mm_utils import tokenizer_image_token, get_model_name_from_path, KeywordsStoppingCriteria |
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import cv2 |
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from torch.utils.data import Dataset, DataLoader |
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from psalm import conversation as conversation_lib |
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from psalm.train.train_datasets_eval import COCO_interactive_dataset |
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from psalm.eval.eval_davis_evaonly import Multicondition_Dataset |
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from detectron2.structures import BoxMode |
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from detectron2.data import MetadataCatalog, DatasetCatalog |
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from typing import Dict, Optional, Sequence, List |
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from dataclasses import dataclass, field |
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import torch.distributed as dist |
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import transformers |
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from pathlib import Path |
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from segmentation_evaluation import openseg_classes |
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COLOR_MAP = openseg_classes.ADE20K_150_CATEGORIES |
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from detectron2.data import detection_utils as utils |
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import pickle |
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import math |
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@dataclass |
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class DataCollatorForCOCODatasetV2(object): |
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"""Collate examples for supervised fine-tuning.""" |
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tokenizer: transformers.PreTrainedTokenizer |
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def __call__(self, instances: Sequence[Dict]) -> Dict[str, torch.Tensor]: |
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if len(instances[0]) == 0: |
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return {} |
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input_ids, labels = tuple([instance[key] for instance in instances] |
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for key in ("input_ids", "labels")) |
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input_ids = torch.nn.utils.rnn.pad_sequence( |
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input_ids, |
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batch_first=True, |
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padding_value=self.tokenizer.pad_token_id) |
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labels = torch.nn.utils.rnn.pad_sequence(labels, |
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batch_first=True, |
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padding_value=IGNORE_INDEX) |
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input_ids = input_ids[:, :self.tokenizer.model_max_length] |
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labels = labels[:, :self.tokenizer.model_max_length] |
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batch = dict( |
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input_ids=input_ids, |
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labels=labels, |
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attention_mask=input_ids.ne(self.tokenizer.pad_token_id), |
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) |
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if 'image' in instances[0]: |
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images = [instance['image'] for instance in instances] |
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if all(x is not None and x.shape == images[0].shape for x in images): |
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batch['images'] = torch.stack(images) |
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else: |
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batch['images'] = images |
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if 'vp_image' in instances[0]: |
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vp_images = [instance['vp_image'] for instance in instances] |
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if all(x is not None and x.shape == vp_images[0].shape for x in vp_images): |
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batch['vp_images'] = torch.stack(vp_images) |
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else: |
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batch['vp_images'] = vp_images |
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for instance in instances: |
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for key in ['input_ids', 'labels', 'image']: |
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del instance[key] |
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batch['seg_info'] = [instance for instance in instances] |
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if 'dataset_type' in instances[0]: |
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batch['dataset_type'] = [instance['dataset_type'] for instance in instances] |
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if 'class_name_ids' in instances[0]: |
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class_name_ids = [instance['class_name_ids'] for instance in instances] |
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if any(x.shape != class_name_ids[0].shape for x in class_name_ids): |
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batch['class_name_ids'] = torch.nn.utils.rnn.pad_sequence( |
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class_name_ids, |
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batch_first=True, |
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padding_value=-1, |
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) |
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else: |
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batch['class_name_ids'] = torch.stack(class_name_ids, dim=0) |
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if 'token_refer_id' in instances[0]: |
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token_refer_id = [instance['token_refer_id'] for instance in instances] |
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batch['token_refer_id'] = token_refer_id |
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if 'cls_indices' in instances[0]: |
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cls_indices = [instance['cls_indices'] for instance in instances] |
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if any(x.shape != cls_indices[0].shape for x in cls_indices): |
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batch['cls_indices'] = torch.nn.utils.rnn.pad_sequence( |
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cls_indices, |
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batch_first=True, |
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padding_value=-1, |
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) |
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else: |
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batch['cls_indices'] = torch.stack(cls_indices, dim=0) |
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if 'random_idx' in instances[0]: |
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random_idxs = [instance['random_idx'] for instance in instances] |
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batch['random_idx'] = torch.stack(random_idxs, dim=0) |
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if 'class_name_embedding_indices' in instances[0]: |
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class_name_embedding_indices = [instance['class_name_embedding_indices'] for instance in instances] |
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class_name_embedding_indices = torch.nn.utils.rnn.pad_sequence( |
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class_name_embedding_indices, |
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batch_first=True, |
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padding_value=0) |
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batch['class_name_embedding_indices'] = class_name_embedding_indices |
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if 'refer_embedding_indices' in instances[0]: |
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refer_embedding_indices = [instance['refer_embedding_indices'] for instance in instances] |
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refer_embedding_indices = torch.nn.utils.rnn.pad_sequence( |
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refer_embedding_indices, |
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batch_first=True, |
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padding_value=0) |
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batch['refer_embedding_indices'] = refer_embedding_indices |
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return batch |
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class Summary(Enum): |
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NONE = 0 |
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AVERAGE = 1 |
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SUM = 2 |
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COUNT = 3 |
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class AverageMeter(object): |
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"""Computes and stores the average and current value""" |
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def __init__(self, name, fmt=":f", summary_type=Summary.AVERAGE): |
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self.name = name |
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self.fmt = fmt |
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self.summary_type = summary_type |
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self.reset() |
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def reset(self): |
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self.val = 0 |
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self.avg = 0 |
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self.sum = 0 |
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self.count = 0 |
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def update(self, val, n=1): |
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self.val = val |
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self.sum += val * n |
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self.count += n |
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self.avg = self.sum / self.count |
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def all_reduce(self): |
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device = "cuda" if torch.cuda.is_available() else "cpu" |
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if isinstance(self.sum, np.ndarray): |
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total = torch.tensor( |
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self.sum.tolist() |
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+ [ |
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self.count, |
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], |
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dtype=torch.float32, |
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device=device, |
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) |
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else: |
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total = torch.tensor( |
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[self.sum, self.count], dtype=torch.float32, device=device |
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) |
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dist.all_reduce(total, dist.ReduceOp.SUM, async_op=False) |
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if total.shape[0] > 2: |
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self.sum, self.count = total[:-1].cpu().numpy(), total[-1].cpu().item() |
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else: |
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self.sum, self.count = total.tolist() |
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self.avg = self.sum / (self.count + 1e-5) |
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def __str__(self): |
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fmtstr = "{name} {val" + self.fmt + "} ({avg" + self.fmt + "})" |
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return fmtstr.format(**self.__dict__) |
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def summary(self): |
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fmtstr = "" |
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if self.summary_type is Summary.NONE: |
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fmtstr = "" |
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elif self.summary_type is Summary.AVERAGE: |
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fmtstr = "{name} {avg:.3f}" |
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elif self.summary_type is Summary.SUM: |
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fmtstr = "{name} {sum:.3f}" |
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elif self.summary_type is Summary.COUNT: |
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fmtstr = "{name} {count:.3f}" |
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else: |
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raise ValueError("invalid summary type %r" % self.summary_type) |
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return fmtstr.format(**self.__dict__) |
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def intersectionAndUnionGPU(output, target, K, ignore_index=255): |
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assert output.dim() in [1, 2, 3] |
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assert output.shape == target.shape |
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output = output.view(-1) |
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target = target.view(-1) |
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output[target == ignore_index] = ignore_index |
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intersection = output[output == target] |
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area_intersection = torch.histc(intersection, bins=K, min=0, max=K - 1) |
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area_output = torch.histc(output, bins=K, min=0, max=K - 1) |
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area_target = torch.histc(target, bins=K, min=0, max=K - 1) |
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area_union = area_output + area_target - area_intersection |
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return area_intersection, area_union, area_target |
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@dataclass |
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class DataArguments: |
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data_path: str = field(default=None, metadata={"help": "Path to the training data."}) |
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lazy_preprocess: bool = False |
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only_two_class: bool = False |
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old_two_class: bool = False |
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is_multimodal: bool = False |
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image_folder: Optional[str] = field(default='/home/emzhang/data/segmentation/refer_seg/images/mscoco/images/train2014') |
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mask_config: Optional[str] = field(default="./psalm/mask_config/maskformer2_swin_base_384_bs16_50ep.yaml") |
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image_aspect_ratio: str = 'square' |
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image_grid_pinpoints: Optional[str] = field(default=None) |
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region_mask_type: Optional[str] = field(default=None) |
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json_path: str = '/home/emzhang/code/LLaVA/datasets/refcoco/refcoco_val.json' |
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model_path: str = '/home/emzhang/code/llava_zem/checkpoints/SEG_class_refcoco_after_fixbug' |
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model_map_name: str = 'psalm_video' |
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version: str = 'opt-iml-1.3b' |
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SEG_norm: bool = field(default=False) |
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SEG_proj: bool = field(default=True) |
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criterion_type: Optional[str] = field(default="concat_seg") |
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matcher_type: Optional[str] = field(default="wo_class") |
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llm_pos: Optional[str] = field(default="none") |
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ln_2048: bool = field(default=False) |
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seg_idx_back: bool = field(default=False) |
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segmentation: bool = True |
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eval_batch_size: int = 1 |
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dataloader_num_workers: int = 4 |
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thr: float = 0.5 |
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topk: int=1 |
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fuse_score: bool = field(default=False) |
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seg_task: Optional[str] = field(default="region") |
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seg_last: bool = field(default=True) |
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num_chunks: int=1 |
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chunk_idx: int=0 |
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with_memory: bool = False |
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def parse_outputs(outputs,gt_mask): |
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res_list = [] |
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for output in outputs: |
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pred_mask = output['instances'].pred_masks |
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pred_mask = pred_mask.cpu().numpy() |
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scores = output['instances'].scores.transpose(1,0).cpu().numpy() |
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gt_mask = output['gt'].cpu().numpy().astype(np.uint8) |
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try: |
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pred_cls = output['instances'].pred_classes.cpu().numpy() |
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except: |
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pred_cls = None |
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assert scores.shape[0] == gt_mask.shape[0] |
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for i in range(gt_mask.shape[0]): |
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res = { |
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'pred':pred_mask, |
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'gt': gt_mask[i], |
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'scores':scores[i], |
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'pred_cls':pred_cls |
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} |
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res_list.append(res) |
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return res_list |
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def parse_outputs_ours(outputs_frame_level, outputs_memory, gt_mask): |
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res_list = [] |
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for output_frame, output_mem in zip(outputs_frame_level, outputs_memory): |
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pred_mask_frame = output_frame['instances'].pred_masks |
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pred_mask_mem = output_mem['instances'].pred_masks |
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pred_mask = pred_mask_frame + pred_mask_mem |
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pred_mask = pred_mask.cpu().numpy() |
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scores_frame = output_frame['instances'].scores.transpose(1,0).cpu().numpy() |
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scores_mem = output_mem['instances'].scores.transpose(1,0).cpu().numpy() |
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scores = scores_frame + scores_mem |
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gt_mask = output_frame['gt'].cpu().numpy().astype(np.uint8) |
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try: |
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pred_cls = output_frame['instances'].pred_classes.cpu().numpy() |
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except: |
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pred_cls = None |
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assert scores.shape[0] == gt_mask.shape[0] |
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for i in range(gt_mask.shape[0]): |
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res = { |
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'pred':pred_mask, |
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'gt': gt_mask[i], |
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'scores':scores[i], |
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'pred_cls':pred_cls |
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} |
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res_list.append(res) |
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return res_list |
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def get_center(mask,h,w): |
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y_coords, x_coords = np.where(mask == 1) |
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if len(y_coords) == 0 or len(x_coords) == 0: |
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return 0.5, 0.5 |
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centroid_y = int(np.mean(y_coords)) |
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centroid_x = int(np.mean(x_coords)) |
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centroid_y = centroid_y / h |
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centroid_x = centroid_x / w |
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return centroid_y, centroid_x |
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def get_distance(x1,y1,x2,y2): |
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return math.sqrt((x2 - x1)**2 + (y2 - y1)**2) |
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def iou(mask1,mask2): |
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intersection = np.logical_and(mask1, mask2) |
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union = np.logical_or(mask1, mask2) |
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iou = np.sum(intersection) / np.sum(union) |
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return iou |
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def compute_metric(le_meter,intersection_meter,union_meter,acc_iou_meter,results_list,thr=0.5,topk=3,vis=False): |
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pred_list = [] |
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gt_list = [] |
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results_list = list(results_list) |
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tot = 0 |
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cor = 0 |
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for results in results_list: |
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gt = results['gt'] |
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preds = results['pred'] |
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scores = results['scores'] |
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preds = preds.astype(np.uint8) |
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_,idx = torch.topk(torch.tensor(scores),topk) |
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idx = idx.cpu().numpy() |
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topk_preds = preds[idx,:] |
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max_acc_iou = -1 |
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max_iou = 0 |
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max_intersection = 0 |
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max_union = 0 |
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max_i = 0 |
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for i,pred_ in enumerate(topk_preds): |
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h,w = pred_.shape[:2] |
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pred_y, pred_x = get_center(pred_,h,w) |
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gt_y, gt_x = get_center(gt,h,w) |
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dist = get_distance(pred_x,pred_y,gt_x,gt_y) |
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le_meter.update(dist) |
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intersection, union, _ = intersectionAndUnionGPU( |
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torch.tensor(pred_).int().cuda().contiguous().clone(), torch.tensor(gt).int().cuda().contiguous(), 2, ignore_index=255 |
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) |
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intersection, union = intersection.cpu().numpy(), union.cpu().numpy() |
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acc_iou = intersection / (union + 1e-5) |
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acc_iou[union == 0] = 1.0 |
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fore_acc_iou = acc_iou[1] |
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if fore_acc_iou > max_acc_iou: |
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max_acc_iou = fore_acc_iou |
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max_iou = acc_iou |
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max_intersection = intersection |
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max_union = union |
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max_i = i |
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intersection_meter.update(max_intersection) |
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union_meter.update(max_union) |
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acc_iou_meter.update(max_iou, n=1) |
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pred_list.append(topk_preds[max_i]) |
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gt_list.append(gt) |
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fg_iou = acc_iou[1] |
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if fg_iou > 0.5: |
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cor += 1 |
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tot += 1 |
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else: |
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tot += 1 |
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return pred_list,gt_list, cor, tot |
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def resize_decoded_mask(decoded_mask,resized_h, resized_w): |
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segm = mask.decode(decoded_mask).astype(np.uint8) |
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new_mask = cv2.resize(segm,(resized_w,resized_h)) |
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new_mask[new_mask > 0] = 1 |
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new_mask = new_mask.astype(np.uint8) |
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resized_mask = mask.encode(np.asfortranarray(new_mask)) |
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return resized_mask |
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|
|
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def decode_mask(decoded_mask): |
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segm = mask.decode(decoded_mask).astype(np.uint8) |
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return segm |
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|
|
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def split_list(lst, n): |
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"""Split a list into n (roughly) equal-sized chunks""" |
|
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chunk_size = math.ceil(len(lst) / n) |
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return [lst[i:i+chunk_size] for i in range(0, len(lst), chunk_size)] |
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|
|
|
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|
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def get_chunk(lst, n, k): |
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chunks = split_list(lst, n) |
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return chunks[k] |
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def fuse_davis_mask(mask_list,fill_number_list): |
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fused_mask = np.zeros_like(mask_list[0]) |
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for mask, fill_number in zip(mask_list,fill_number_list): |
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fill_number = int(fill_number) |
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fused_mask[mask == 1] = fill_number |
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return fused_mask |
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|
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|
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import os |
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|
import re |
|
|
|
|
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def get_latest_checkpoint_path(model_path): |
|
|
|
|
|
checkpoint_pattern = re.compile(r"checkpoint-(\d+)") |
|
|
|
|
|
|
|
|
if os.path.basename(model_path).startswith("checkpoint-") and checkpoint_pattern.match(os.path.basename(model_path)): |
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|
return model_path |
|
|
|
|
|
|
|
|
elif os.path.isdir(model_path): |
|
|
checkpoints = [d for d in os.listdir(model_path) if checkpoint_pattern.match(d)] |
|
|
|
|
|
if not checkpoints: |
|
|
raise ValueError("No checkpoints found in the specified directory.") |
|
|
|
|
|
|
|
|
max_checkpoint = max(checkpoints, key=lambda x: int(checkpoint_pattern.match(x).group(1))) |
|
|
model_path = os.path.join(model_path, max_checkpoint) |
|
|
|
|
|
elif not os.path.exists(model_path): |
|
|
raise FileNotFoundError(f"The specified path '{model_path}' does not exist.") |
|
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return model_path |
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def evaluation(): |
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parser = transformers.HfArgumentParser(DataArguments) |
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data_args = parser.parse_args_into_dataclasses()[0] |
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disable_torch_init() |
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model_path = os.path.expanduser(data_args.model_path) |
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model_path = get_latest_checkpoint_path(model_path) |
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print('------------------------TESTING----------------- ckp:', model_path) |
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model_name = get_model_name_from_path(model_path) |
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print(f'current model is {model_path}') |
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print('save model name:', model_name) |
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model_name = 'psalm_SSL_MultiCondition' |
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print('now changed the model name to:', model_name) |
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tokenizer, model, image_processor, context_len = load_pretrained_model(model_path, None, model_name, model_args=data_args, mask_config=data_args.mask_config, device='cuda') |
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data_args.image_processor = image_processor |
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data_args.is_multimodal = True |
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conversation_lib.default_conversation = conversation_lib.conv_templates[data_args.version] |
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eval_dataset = Multicondition_Dataset(json_path=data_args.json_path, tokenizer=tokenizer, data_args=data_args) |
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data_collator = DataCollatorForCOCODatasetV2(tokenizer=tokenizer) |
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dataloader_params = { |
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"batch_size": data_args.eval_batch_size, |
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"num_workers": data_args.dataloader_num_workers, |
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} |
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eval_dataloader = DataLoader(eval_dataset, batch_size=dataloader_params['batch_size'], collate_fn=data_collator, |
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num_workers=dataloader_params['num_workers']) |
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def load_ref_dataset(): |
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return RefCOCO_dataset(json_path=data_args.json_path, tokenizer=tokenizer, data_args=data_args) |
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DatasetCatalog.register('refcoco_dataset', load_ref_dataset) |
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MetadataCatalog.get('refcoco_dataset').set(stuff_classes=['object'],) |
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gt_json_path = data_args.json_path |
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save_dir = os.path.dirname(gt_json_path) |
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save_dir = os.path.join(save_dir,'predictions_memory') |
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device = 'cuda' if torch.cuda.is_available() else 'cpu' |
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model.to(device=device,dtype=torch.float).eval() |
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save_list = [] |
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intersection_meter = AverageMeter("Intersec", ":6.3f", Summary.SUM) |
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union_meter = AverageMeter("Union", ":6.3f", Summary.SUM) |
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acc_iou_meter = AverageMeter("gIoU", ":6.3f", Summary.SUM) |
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le_meter = AverageMeter("LE", ":6.3f", Summary.SUM) |
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cor = 0 |
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tot = 0 |
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prev_image = None |
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prev_mask_list = None |
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prev_fill_number_list = None |
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prev_video = None |
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prev_transformer = None |
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with torch.no_grad(): |
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for idx, inputs in tqdm(enumerate(eval_dataloader), total=len(eval_dataloader)): |
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if len(inputs) == 0: |
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print('no data load') |
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continue |
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inputs = {k: v.to(device) if torch.is_tensor(v) else v for k, v in inputs.items()} |
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inputs['token_refer_id'] = [ids.to(device) for ids in inputs['token_refer_id']] |
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video_name = inputs['seg_info'][0]['file_name'].split('/')[-3] |
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if prev_video is None or prev_video != video_name: |
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print(f'old video: {prev_video} -> current video: {video_name}') |
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prev_mask_list = [] |
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prev_fill_number_list = [] |
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prev_video = video_name |
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if len(prev_mask_list) != 0 and len(inputs['seg_info'][0]['instances'].vp_fill_number) == len( |
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prev_fill_number_list): |
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inputs['vp_images'] = prev_image |
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vp_region_masks = [] |
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for mask_ in prev_mask_list: |
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scale_mask = prev_transformer.apply_segmentation(mask_) |
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vp_region_masks.append(scale_mask) |
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vp_region_masks = BitMasks( |
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torch.stack([torch.from_numpy(np.ascontiguousarray(x)) for x in vp_region_masks]) |
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) |
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inputs['seg_info'][0]['instances'].vp_region_masks = vp_region_masks |
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inputs['seg_info'][0]['instances'].vp_fill_number = torch.tensor(prev_fill_number_list, |
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dtype=torch.int64) |
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if len(prev_mask_list) != 0 and len(inputs['seg_info'][0]['instances'].vp_fill_number) != len( |
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prev_fill_number_list): |
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print('some object missing, using original visual prompts') |
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outputs_memory = model.eval_video( |
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input_ids=inputs['input_ids'], |
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attention_mask=inputs['attention_mask'], |
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images=inputs['images'].float(), |
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vp_images=inputs['vp_images'].float(), |
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seg_info=inputs['seg_info'], |
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token_refer_id = inputs['token_refer_id'], |
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refer_embedding_indices=inputs['refer_embedding_indices'], |
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labels=inputs['labels'] |
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) |
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if torch.cuda.is_available(): |
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torch.cuda.synchronize() |
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cur_res = parse_outputs(outputs_memory, None) |
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pred,gt_mask,cur_cor, cur_tot = compute_metric(le_meter,intersection_meter,union_meter,acc_iou_meter,cur_res,topk=data_args.topk) |
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cor += cur_cor |
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tot += cur_tot |
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output_mem = outputs_memory[0] |
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pred_mask_mem = output_mem['instances'].pred_masks |
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pred_mask = pred_mask_mem.cpu().numpy() |
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scores = output_mem['instances'].scores.transpose(1, 0).cpu().numpy() |
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gt_mask = output_mem['gt'].cpu().numpy().astype(np.uint8) |
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assert len(scores) == len(inputs['seg_info'][0]['instances'].vp_fill_number) |
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pred_mask_list = [] |
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pred_score_list = [] |
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fill_number_list = [] |
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prev_idx = [] |
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for i in range(len(scores)): |
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cur_scores = scores[i] |
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cur_fill_number = inputs['seg_info'][0]['instances'].vp_fill_number[i] |
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max_score, idx = torch.topk(torch.tensor(cur_scores), 10, largest=True, sorted=True) |
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idx = idx.cpu().numpy() |
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for i in range(10): |
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if idx[i] not in prev_idx: |
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prev_idx.append(idx[i]) |
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pick_idx = idx[i] |
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pick_score = max_score[i] |
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break |
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cur_pred = pred_mask[pick_idx, :] |
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pred_score_list.append(pick_score) |
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pred_mask_list.append(cur_pred) |
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fill_number_list.append(cur_fill_number) |
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pred_mask_list = [tensor_.astype(np.uint8) for tensor_ in pred_mask_list] |
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memory_correct_flag = True |
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for i in range(len(pred_mask_list)): |
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for j in range(len(pred_mask_list)): |
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if i != j: |
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intersection = np.logical_and(pred_mask_list[i], pred_mask_list[j]) |
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union = np.logical_or(pred_mask_list[i], pred_mask_list[j]) |
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iou = np.sum(intersection) / np.sum(union) |
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if iou > 0.4: |
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memory_correct_flag = False |
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if memory_correct_flag: |
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prev_mask_list = pred_mask_list |
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prev_fill_number_list = fill_number_list |
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prev_image = inputs['images'].float() |
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prev_transformer = inputs['seg_info'][0]['transforms'] |
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else: |
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print('memory is wrong, using origin visual prompt') |
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iou_class = intersection_meter.sum / (union_meter.sum + 1e-10) |
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ciou = iou_class[1] |
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giou = acc_iou_meter.avg[1] |
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le = le_meter.avg |
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bg_giou = acc_iou_meter.avg[0] |
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miou = (giou + bg_giou) / 2 |
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acc = cor / tot |
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msg = "benchmark: {}: top {}, giou: {:.4f}, ciou: {:.4f}, miou: {:.4f}, acc: {:.4f}, LE: {:.4f}".format('ego4d', |
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data_args.topk, |
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giou, ciou, miou, |
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acc, le) |
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print(msg) |
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if __name__ == '__main__': |
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evaluation() |
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