import argparse import torch import os from enum import Enum import json from tqdm import tqdm import shortuuid import numpy as np from psalm.constants import IGNORE_INDEX, IMAGE_TOKEN_INDEX, DEFAULT_IMAGE_TOKEN, DEFAULT_IM_START_TOKEN, \ DEFAULT_IM_END_TOKEN, DEFAULT_SEG_TOKEN, SEG_TOKEN_INDEX, CLS_TOKEN_INDEX, REFER_TOKEN_INDEX from psalm.conversation import conv_templates, SeparatorStyle from psalm.model.builder import load_pretrained_model from psalm.utils import disable_torch_init from psalm.mm_utils import tokenizer_image_token, get_model_name_from_path, KeywordsStoppingCriteria from psalm.eval.segmentation_evaluation.instance_evaluation import InstanceSegEvaluator, my_coco_evaluator from psalm.eval.segmentation_evaluation.referring_evaluation import my_refcoco_evaluator from transformers import StoppingCriteria, StoppingCriteriaList import cv2 from torch.utils.data import Dataset, DataLoader from psalm import conversation as conversation_lib from psalm.train.train_datasets import DataCollatorForCOCODatasetV2, RefCOCO_dataset from detectron2.structures import BoxMode from detectron2.data import MetadataCatalog, DatasetCatalog from pycocotools import mask from typing import Dict, Optional, Sequence, List from dataclasses import dataclass, field import torch.distributed as dist import transformers import pickle from pathlib import Path class Summary(Enum): NONE = 0 AVERAGE = 1 SUM = 2 COUNT = 3 class AverageMeter(object): """Computes and stores the average and current value""" def __init__(self, name, fmt=":f", summary_type=Summary.AVERAGE): self.name = name self.fmt = fmt self.summary_type = summary_type self.reset() def reset(self): self.val = 0 self.avg = 0 self.sum = 0 self.count = 0 def update(self, val, n=1): self.val = val self.sum += val * n self.count += n self.avg = self.sum / self.count def all_reduce(self): device = "cuda" if torch.cuda.is_available() else "cpu" if isinstance(self.sum, np.ndarray): total = torch.tensor( self.sum.tolist() + [ self.count, ], dtype=torch.float32, device=device, ) else: total = torch.tensor( [self.sum, self.count], dtype=torch.float32, device=device ) dist.all_reduce(total, dist.ReduceOp.SUM, async_op=False) if total.shape[0] > 2: self.sum, self.count = total[:-1].cpu().numpy(), total[-1].cpu().item() else: self.sum, self.count = total.tolist() self.avg = self.sum / (self.count + 1e-5) def __str__(self): fmtstr = "{name} {val" + self.fmt + "} ({avg" + self.fmt + "})" return fmtstr.format(**self.__dict__) def summary(self): fmtstr = "" if self.summary_type is Summary.NONE: fmtstr = "" elif self.summary_type is Summary.AVERAGE: fmtstr = "{name} {avg:.3f}" elif self.summary_type is Summary.SUM: fmtstr = "{name} {sum:.3f}" elif self.summary_type is Summary.COUNT: fmtstr = "{name} {count:.3f}" else: raise ValueError("invalid summary type %r" % self.summary_type) return fmtstr.format(**self.__dict__) def intersectionAndUnionGPU(output, target, K, ignore_index=255): # 'K' classes, output and target sizes are N or N * L or N * H * W, each value in range 0 to K - 1. assert output.dim() in [1, 2, 3] assert output.shape == target.shape output = output.view(-1) target = target.view(-1) output[target == ignore_index] = ignore_index intersection = output[output == target] area_intersection = torch.histc(intersection, bins=K, min=0, max=K - 1) area_output = torch.histc(output, bins=K, min=0, max=K - 1) area_target = torch.histc(target, bins=K, min=0, max=K - 1) area_union = area_output + area_target - area_intersection return area_intersection, area_union, area_target def parse_outputs(outputs,gt_mask): res_list = [] for output in outputs: # gt = output['gt'].cpu().numpy().astype(np.uint8) pred_mask = output['instances'].pred_masks pred_mask = pred_mask.cpu().numpy() scores = output['instances'].scores.cpu().numpy() try: pred_cls = output['instances'].pred_classes.cpu().numpy() except: pred_cls = None res = { 'pred':pred_mask, 'gt': gt_mask, 'scores':scores, 'pred_cls':pred_cls } res_list.append(res) return res_list def compute_metric(intersection_meter,union_meter,acc_iou_meter, gt_cls, results_list,thr=0.6): pred_list = [] gt_list = [] results_list = list(results_list) for results in results_list: gt = results['gt'] preds = results['pred'] scores = results['scores'] # import ipdb;ipdb.set_trace() preds = preds.astype(np.uint8) pred_mask = [] for i, score_ in enumerate(scores): if score_ > thr: pred_mask.append(preds[i]) pred_mask = [fuse_masks(pred_mask)] if len(pred_mask) == 0: pred_mask = [np.zeros_like(gt, dtype=np.uint8)] if pred_mask[0] is None: topk_scores, idx = torch.topk(torch.tensor(scores), 1) idx = idx.cpu().numpy() topk_preds = preds[idx, :] pred_mask = [fuse_masks(topk_preds)] max_acc_iou = -1 max_iou = 0 max_intersection = 0 max_union = 0 max_i = 0 # len(pred_mask) is 1, only have 1 candidate for i,pred_ in enumerate(pred_mask): intersection, union, _ = intersectionAndUnionGPU( torch.tensor(pred_).int().cuda().contiguous().clone(), torch.tensor(gt).int().cuda().contiguous(), 2, ignore_index=255 ) intersection, union = intersection.cpu().numpy(), union.cpu().numpy() acc_iou = intersection / (union + 1e-5) acc_iou[union == 0] = 1.0 # no-object target fore_acc_iou = acc_iou[1] if fore_acc_iou > max_acc_iou: max_acc_iou = fore_acc_iou max_iou = acc_iou max_intersection = intersection max_union = union max_i = i intersection_meter.update(max_intersection) union_meter.update(max_union) acc_iou_meter.update(max_iou, n=1) pred_list.append(pred_mask[max_i]) gt_list.append(gt) return pred_list, gt_list @dataclass class DataArguments: data_path: str = field(default=None, metadata={"help": "Path to the training data."}) lazy_preprocess: bool = False is_multimodal: bool = False image_folder: Optional[str] = field(default='/path/to/val2017') model_path: Optional[str] = field(default="/path/to/model") mask_config: Optional[str] = field(default="./psalm/mask_config/maskformer2_swin_base_384_bs16_50ep.yaml") image_aspect_ratio: str = 'square' image_grid_pinpoints: Optional[str] = field(default=None) json_path: str = '/path/to/coco' model_map_name: str = 'psalm' version: str = 'llava_phi' output_dir: str = './output/panoptic_segmentation' segmentation: bool = True eval_batch_size: int = 1 dataloader_num_workers: int = 4 seg_task: Optional[str] = field(default="referring") thr: float = 0.6 class gRefcoco_Dataset(RefCOCO_dataset): def __getitem__(self, idx): data = self.data[idx] image_file = data['image_info']['file_name'] image_folder = self.data_args.refcoco_image_folder data_dict = {} data_dict['file_name'] = os.path.join(image_folder, image_file) data_dict['height'] = data['image_info']['height'] data_dict['width'] = data['image_info']['width'] data_dict['image_id'] = data['new_img_id'] data_dict['annotations'] = data['anns'] for annotation in data_dict['annotations']: annotation['bbox_mode'] = BoxMode.XYXY_ABS # annotation['category_id'] = self.coco_id_to_cont_id[annotation['category_id']] if annotation['category_id'] in self.coco_id_to_cont_id: annotation['category_id'] = self.coco_id_to_cont_id[annotation['category_id']] elif annotation['category_id'] in self.coco_id_to_cont_id.values(): annotation['category_id'] = annotation['category_id'] else: raise ValueError annotation['image_id'] = data['new_img_id'] if isinstance(self.data_args.image_processor,dict): processor = self.data_args.image_processor['panoptic'] else: processor = self.data_args.image_processor data_dict = processor.preprocess(data_dict, mask_format=self.mask_format) # instruction = data['instruction'] sentences = data['instruction'] # prefix_inst = 'Referring Segmentation according to the following instruction:' prefix_inst = 'This is an image , Please doing Referring Segmentation according to the following instruction:' instruction = '' for sent in sentences: instruction += ' {}.'.format(sent['sent']) # instruction = 'Please segment all the items in this image' # num_class = len(self.coco_class_name) # category = ', ' * (num_class-1) + '.' sources = [[{'from': 'human', 'value': prefix_inst + '\n'}, {'from': 'gpt', 'value': '\nSure, the segmentation result is '}]] # sources = self.preprocess_multimodal(copy.deepcopy(sources)) text_dict = self.preprocess_llama2(sources, self.tokenizer) input_ids = text_dict['input_ids'][0] labels = text_dict['labels'][0] token_refer_id = self.preprocess_referring_instruction(instruction) refer_embedding_indices = torch.zeros_like(input_ids) refer_embedding_indices[input_ids == REFER_TOKEN_INDEX] = 1 data_dict['input_ids'] = text_dict['input_ids'][0] data_dict['labels'] = text_dict['labels'][0] data_dict['dataset_type'] = 'referring_coco' data_dict['token_refer_id'] = token_refer_id data_dict['refer_embedding_indices'] = refer_embedding_indices return data_dict def fuse_masks(masks): fused_mask = None for mask_ in masks: if fused_mask is None: fused_mask = mask_ else: fused_mask = np.logical_or(fused_mask,mask_) return fused_mask def evaluation(data_args,thr=0.6): disable_torch_init() model_path = os.path.expanduser(data_args.model_path) model_name = get_model_name_from_path(model_path) save_suffix = os.path.basename(data_args.json_path).split('.')[0] print(f'save suffix is {save_suffix}') print(f'current model is {model_path}') tokenizer, model, image_processor, context_len = load_pretrained_model(model_path, None, model_name, model_args=data_args, mask_config=data_args.mask_config, device='cuda') data_args.image_processor = image_processor data_args.is_multimodal = True conversation_lib.default_conversation = conversation_lib.conv_templates[data_args.version] data_args.refcoco_image_folder = data_args.image_folder eval_dataset = gRefcoco_Dataset(json_path=data_args.json_path, tokenizer=tokenizer, data_args=data_args) data_collator = DataCollatorForCOCODatasetV2(tokenizer=tokenizer) dataloader_params = { "batch_size": data_args.eval_batch_size, "num_workers": data_args.dataloader_num_workers, } eval_dataloader = DataLoader(eval_dataset, batch_size=dataloader_params['batch_size'], collate_fn=data_collator, num_workers=dataloader_params['num_workers']) def load_ref_dataset(): return RefCOCO_dataset(json_path=data_args.json_path, tokenizer=tokenizer, data_args=data_args) try: DatasetCatalog.register('refcoco_dataset', load_ref_dataset) except: print('dataset have been registed') MetadataCatalog.get('refcoco_dataset').set(stuff_classes=['object'],) gt_json_path = data_args.json_path with open(gt_json_path) as f: gt_data = json.load(f) device = 'cuda' if torch.cuda.is_available() else 'cpu' model.to(device=device,dtype=torch.float).eval() save_list = [] intersection_meter = AverageMeter("Intersec", ":6.3f", Summary.SUM) union_meter = AverageMeter("Union", ":6.3f", Summary.SUM) acc_iou_meter = AverageMeter("gIoU", ":6.3f", Summary.SUM) with torch.no_grad(): for idx, inputs in tqdm(enumerate(eval_dataloader), total=len(eval_dataloader)): gt = gt_data[idx]['anns'] h, w = gt_data[idx]['image_info']['height'], gt_data[idx]['image_info']['width'] # generate gt mask masks = [] for annotation in gt: if isinstance(annotation['segmentation'], list): segm = np.zeros((h, w), dtype=np.uint8) for poly in annotation['segmentation']: poly = np.array(poly, dtype=np.int32).reshape(-1, 2) cv2.fillPoly(segm, [poly], 1) masks.append(segm.astype(np.bool_)) else: if isinstance(annotation['segmentation']['counts'], list): rle = mask.frPyObjects(annotation['segmentation'], *annotation['segmentation']['size']) segm = mask.decode(rle) else: segm = mask.decode(annotation['segmentation']) masks.append(segm.astype(np.bool_)) if len(masks) == 0: gt_mask = np.zeros((h,w), dtype=np.uint8) else: gt_mask = fuse_masks(masks) inputs = {k: v.to(device) if torch.is_tensor(v) else v for k, v in inputs.items()} inputs['token_refer_id'] = [ids.to(device) for ids in inputs['token_refer_id']] outputs = model.eval_seg( input_ids=inputs['input_ids'], attention_mask=inputs['attention_mask'], images=inputs['images'].float(), seg_info=inputs['seg_info'], token_refer_id = inputs['token_refer_id'], refer_embedding_indices=inputs['refer_embedding_indices'], labels=inputs['labels'] ) if torch.cuda.is_available(): torch.cuda.synchronize() cur_res = parse_outputs(outputs,gt_mask) pred,gt_mask = compute_metric(intersection_meter,union_meter,acc_iou_meter, None, cur_res,thr=thr) save_list.append({'pred':pred[0],'gt':gt_mask[0],'name':inputs['seg_info'][0]['file_name']}) iou_class = intersection_meter.sum / (union_meter.sum + 1e-10) ciou = iou_class[1] giou = acc_iou_meter.avg[1] msg = "benchmark: {}: thr {}, giou: {:.4f}, ciou: {:.4f}".format(save_suffix, thr, giou, ciou) print(msg) save_path = os.path.join(data_args.model_path,'pred_pkl') Path(save_path).mkdir(parents=True,exist_ok=True) with open(os.path.join(save_path,f'pred_{save_suffix}.pkl'),'wb') as f: pickle.dump(save_list, f) with open(os.path.join(save_path,f'pred_{save_suffix}_{int(thr*10)}.txt'),'w') as f: f.write(msg) if __name__ == "__main__": parser = transformers.HfArgumentParser(DataArguments) data_args = parser.parse_args_into_dataclasses()[0] thr = data_args.thr evaluation(data_args,thr)